Wall clock time and date at job start Tue Mar 31 2020 20:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 H 1.08999 * 109.47355 * 304.99881 * 5 4 2 7 7 C 1.52996 * 109.47361 * 184.99895 * 5 4 2 8 8 N 1.46507 * 109.47352 * 64.99636 * 5 4 2 9 9 C 1.36938 * 120.00120 * 205.00288 * 8 5 4 10 10 H 1.07993 * 119.99826 * 0.02562 * 9 8 5 11 11 C 1.38812 * 119.99756 * 179.97438 * 9 8 5 12 12 N 1.31612 * 120.00025 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46712 * 90.00102 * 13 11 9 15 15 H 1.48493 * 109.47377 * 210.00574 * 13 11 9 16 16 H 1.48503 * 109.46898 * 330.00516 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 18 23 23 N 1.31134 * 126.54751 * 89.70984 * 22 21 20 24 24 C 1.34501 * 105.61251 * 179.97438 * 23 22 21 25 25 C 1.50691 * 126.28903 * 180.12836 * 24 23 22 26 26 C 1.53005 * 117.50212 * 188.91145 * 25 24 23 27 27 C 1.53003 * 59.99990 * 252.51009 * 26 25 24 28 28 N 1.29954 * 107.42463 * 0.34983 * 24 23 22 29 29 O 1.21301 * 110.24926 * 359.77973 * 28 24 23 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 33 33 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 34 34 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 35 35 H 1.08997 * 109.47396 * 180.02562 * 7 5 4 36 36 H 1.09003 * 109.47120 * 299.99851 * 7 5 4 37 37 H 1.08993 * 109.47473 * 60.00041 * 7 5 4 38 38 H 0.97003 * 119.99323 * 25.00322 * 8 5 4 39 39 H 0.97008 * 119.99960 * 179.97438 * 12 11 9 40 40 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 41 41 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 42 42 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 43 43 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 44 44 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 45 45 H 1.09005 * 115.55157 * 334.61422 * 25 24 23 46 46 H 1.09003 * 117.49200 * 359.97438 * 26 25 24 47 47 H 1.08997 * 117.50087 * 145.01702 * 26 25 24 48 48 H 1.09001 * 117.49551 * 252.51142 * 27 26 25 49 49 H 1.08996 * 117.52290 * 107.47954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3944 -0.9856 0.2805 10 1 5.9385 -0.1789 -0.1880 11 6 5.9521 -1.6684 1.3526 12 7 5.2887 -2.6512 1.9238 13 14 7.6448 -1.1934 1.9839 14 1 7.5070 -0.1555 3.0369 15 1 8.3148 -2.3902 2.5530 16 1 8.4583 -0.6567 0.8633 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 6 2.7019 0.2543 4.7585 22 6 3.2042 -0.4561 5.9889 23 7 4.4544 -0.5746 6.3665 24 6 4.4216 -1.2802 7.5111 25 6 5.6102 -1.6817 8.3458 26 6 5.3669 -2.6589 9.4977 27 6 5.6574 -1.1859 9.7925 28 7 3.1768 -1.5562 7.7625 29 8 2.4613 -1.0918 6.9000 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 5.1507 -1.1483 -2.6700 36 1 3.7722 -2.2739 -2.6702 37 1 3.6263 -0.6884 -3.4658 38 1 3.6647 -2.0585 0.2384 39 1 5.6786 -3.1286 2.6729 40 1 2.2490 -1.6318 1.1524 41 1 1.9778 -1.5511 3.8324 42 1 3.6493 -1.1205 3.3977 43 1 3.3743 1.0764 4.5133 44 1 1.7028 0.6465 4.9483 45 1 6.5560 -1.7607 7.8097 46 1 4.3469 -3.0110 9.6520 47 1 6.1526 -3.3811 9.7195 48 1 6.6343 -0.9390 10.2082 49 1 4.8290 -0.5690 10.1404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135648948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:18 Heat of formation + Delta-G solvation = 41.051426 kcal Electronic energy + Delta-G solvation = -29947.919698 eV Core-core repulsion = 25913.653271 eV Total energy + Delta-G solvation = -4034.266427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.68887 -40.78275 -38.72286 -38.36874 -36.71601 -35.79427 -35.00311 -33.99742 -32.46945 -31.56047 -30.16819 -27.56835 -26.76036 -26.35972 -25.54466 -24.17482 -23.40723 -22.36769 -21.63680 -21.31526 -20.87312 -19.20393 -19.08527 -18.79328 -17.91235 -17.15152 -16.74951 -16.62010 -16.48354 -15.99402 -15.59084 -15.43343 -15.34417 -14.67165 -14.51382 -14.27780 -14.07570 -13.71913 -13.53293 -13.46142 -13.33159 -13.27922 -13.13759 -13.06415 -12.87169 -12.76463 -12.56338 -12.54765 -12.27701 -12.19092 -12.14767 -12.11861 -11.76105 -11.66094 -11.59484 -11.57402 -11.36382 -10.86005 -10.80999 -10.60107 -9.75727 -8.80106 -7.85613 -5.06290 -0.00803 1.04782 1.44261 1.50151 1.52015 1.65221 1.87297 2.40895 2.58636 2.62532 2.69666 3.03292 3.49594 3.60656 3.71113 3.82063 3.86089 3.92086 4.00078 4.09840 4.16624 4.23401 4.31490 4.44936 4.51551 4.60676 4.61649 4.63111 4.75662 4.78309 4.85057 4.88392 4.91804 4.92614 4.97719 4.99621 5.08940 5.09351 5.13261 5.17815 5.21114 5.43647 5.46120 5.62541 5.66538 5.86266 6.36585 6.78513 7.05728 7.46689 7.47909 8.20600 8.47635 9.34535 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003646 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.333157 B = 7678.352944 C = 9569.575673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.058 0.942 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.030 0.970 7 C -0.155 4.155 8 N -0.719 5.719 9 C -0.222 4.222 10 H 0.056 0.944 11 C -0.046 4.046 12 N -0.940 5.940 13 Si 0.933 3.067 14 H -0.299 1.299 15 H -0.301 1.301 16 H -0.282 1.282 17 N -0.692 5.692 18 C 0.531 3.469 19 O -0.589 6.589 20 C -0.134 4.134 21 C 0.000 4.000 22 C 0.202 3.798 23 N -0.508 5.508 24 C 0.195 3.805 25 C -0.112 4.112 26 C -0.144 4.144 27 C -0.138 4.138 28 N -0.399 5.399 29 O 0.075 5.925 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.027 0.973 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.376 0.624 39 H 0.244 0.756 40 H 0.405 0.595 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 1.183 5.641 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.076 0.924 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.049 0.951 7 C -0.215 4.215 8 N -0.362 5.362 9 C -0.354 4.354 10 H 0.074 0.926 11 C -0.240 4.240 12 N -0.591 5.591 13 Si 0.766 3.234 14 H -0.227 1.227 15 H -0.228 1.228 16 H -0.208 1.208 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.471 6.471 20 C -0.175 4.175 21 C -0.040 4.040 22 C -0.018 4.018 23 N -0.242 5.242 24 C -0.077 4.077 25 C -0.132 4.132 26 C -0.182 4.182 27 C -0.177 4.177 28 N -0.109 5.109 29 O 0.019 5.981 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.210 0.790 39 H 0.053 0.947 40 H 0.242 0.758 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.113 0.887 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.344 1.682 6.301 10.590 hybrid contribution 1.450 -0.427 0.284 1.538 sum -6.894 1.254 6.585 9.616 Atomic orbital electron populations 1.22100 0.93823 1.02633 1.02406 1.20930 0.94306 0.96282 0.84315 0.92366 1.22120 0.94699 1.01536 0.97496 1.20497 0.92256 0.94446 0.87466 0.95146 1.22284 1.00022 1.00794 0.98372 1.42513 1.17631 1.40149 1.35873 1.19279 0.94461 1.11934 1.09734 0.92562 1.24881 0.99927 0.99394 0.99806 1.69641 1.38238 1.25141 1.26080 0.85751 0.83239 0.76398 0.78029 1.22712 1.22789 1.20774 1.46006 1.65014 1.14364 1.08875 1.20223 0.76124 0.86514 0.85302 1.90608 1.53397 1.16949 1.86192 1.21537 1.05077 0.99080 0.91843 1.19955 1.04811 0.95944 0.83254 1.29033 0.84789 0.93253 0.94750 1.71955 1.20579 1.19772 1.11855 1.25338 0.93558 0.96153 0.92647 1.20304 0.93279 1.09653 0.89958 1.23159 1.04337 0.93467 0.97231 1.23173 1.05031 0.97178 0.92289 1.74483 1.04391 1.20031 1.11998 1.85245 1.35657 1.51004 1.26203 0.91470 0.93779 0.89869 0.90667 0.87506 0.95365 0.93436 0.91290 0.78977 0.94652 0.75816 0.87043 0.88729 0.87798 0.85094 0.84824 0.88735 0.85039 0.84847 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.48 71.98 0.68 -2.72 16 2 C 0.15 4.18 2.57 44.99 0.12 4.30 16 3 H 0.06 1.98 7.58 -2.38 -0.02 1.96 16 4 C -0.12 -3.09 4.43 30.59 0.14 -2.96 16 5 C 0.16 5.57 2.89 44.99 0.13 5.70 16 6 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 7 C -0.15 -4.86 9.49 71.98 0.68 -4.18 16 8 N -0.72 -30.98 3.84 -322.95 -1.24 -32.22 16 9 C -0.22 -11.34 9.93 84.03 0.83 -10.50 16 10 H 0.06 2.96 7.83 -2.91 -0.02 2.94 16 11 C -0.05 -2.45 5.50 84.86 0.47 -1.99 16 12 N -0.94 -50.46 12.78 21.65 0.28 -50.18 16 13 Si 0.93 45.90 29.55 68.60 2.03 47.92 16 14 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 15 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 16 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 17 N -0.69 -22.68 3.80 -442.53 -1.68 -24.36 16 18 C 0.53 19.02 7.79 87.66 0.68 19.70 16 19 O -0.59 -23.40 15.64 -3.03 -0.05 -23.45 16 20 C -0.13 -4.50 5.68 29.85 0.17 -4.33 16 21 C 0.00 -0.01 5.13 29.85 0.15 0.14 16 22 C 0.20 6.65 7.77 88.38 0.69 7.34 16 23 N -0.51 -19.01 11.55 -303.17 -3.50 -22.51 16 24 C 0.19 6.50 7.74 138.46 1.07 7.57 16 25 C -0.11 -2.91 6.33 -11.54 -0.07 -2.99 16 26 C -0.14 -2.80 10.14 30.60 0.31 -2.49 16 27 C -0.14 -2.60 10.23 30.60 0.31 -2.29 16 28 N -0.40 -13.05 11.77 -60.29 -0.71 -13.75 16 29 O 0.08 2.38 11.31 74.82 0.85 3.22 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.38 16.50 5.70 -92.71 -0.53 15.97 16 39 H 0.24 13.39 8.31 -92.70 -0.77 12.62 16 40 H 0.40 13.59 6.51 -92.71 -0.60 12.98 16 41 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.09 3.97 7.86 -2.39 -0.02 3.95 16 43 H 0.10 3.43 8.10 -2.39 -0.02 3.41 16 44 H 0.13 3.22 8.10 -2.39 -0.02 3.20 16 45 H 0.13 3.44 8.14 -2.38 -0.02 3.42 16 46 H 0.09 2.02 7.91 -2.39 -0.02 2.00 16 47 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.77 408.51 2.16 -62.61 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.17 Total: 42.42 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.36 Total: 10.31 kcal Atomic # 7 Polarization: -136.18 SS G_CDS: -6.86 Total: -143.03 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.80 Total: -20.23 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -64.77 2.16 -62.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.666 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds