Wall clock time and date at job start Tue Mar 31 2020 20:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21272 * 120.00339 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99511 * 180.02562 * 9 8 5 12 12 C 1.53001 * 109.46973 * 299.99638 * 11 9 8 13 13 C 1.52999 * 109.47298 * 59.99960 * 11 9 8 14 14 C 1.50700 * 109.46616 * 179.97438 * 11 9 8 15 15 C 1.38227 * 120.00931 * 120.00318 * 14 11 9 16 16 C 1.38226 * 120.02402 * 179.97438 * 15 14 11 17 17 C 1.38273 * 120.04929 * 0.02562 * 16 15 14 18 18 C 1.38174 * 120.02844 * 0.02562 * 17 16 15 19 19 C 1.38436 * 120.01627 * 299.72036 * 14 11 9 20 20 F 1.35102 * 120.02459 * 0.02562 * 19 14 11 21 21 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 33 33 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 34 34 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 35 35 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 36 36 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 37 37 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 38 38 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 39 39 H 1.09005 * 109.46675 * 60.00456 * 12 11 9 40 40 H 1.09000 * 109.46793 * 179.97438 * 12 11 9 41 41 H 1.08994 * 109.47539 * 300.00237 * 12 11 9 42 42 H 1.09002 * 109.47126 * 59.99895 * 13 11 9 43 43 H 1.08996 * 109.46867 * 179.97438 * 13 11 9 44 44 H 1.09001 * 109.47052 * 299.99800 * 13 11 9 45 45 H 1.07994 * 119.98688 * 359.97438 * 15 14 11 46 46 H 1.07994 * 119.97243 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.98227 * 179.97438 * 17 16 15 48 48 H 1.07997 * 120.01539 * 179.97438 * 18 17 16 49 49 H 0.97004 * 119.99747 * 265.00379 * 21 2 1 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9355 0.4341 0.5730 11 6 5.5555 2.6563 1.2709 12 6 4.5769 3.5536 0.5105 13 6 5.5195 3.0087 2.7593 14 6 6.9494 2.8680 0.7386 15 6 7.1685 3.7692 -0.2864 16 6 8.4470 3.9639 -0.7745 17 6 9.5079 3.2573 -0.2386 18 6 9.2910 2.3552 0.7853 19 6 8.0116 2.1643 1.2798 20 9 7.7993 1.2871 2.2851 21 7 2.0183 -0.6906 -1.1962 22 6 2.1490 -0.0075 -2.3758 23 1 1.8925 1.0405 -2.4242 24 6 2.6112 -0.6619 -3.5093 25 7 2.9290 -1.9378 -3.4489 26 14 2.7902 0.2701 -5.1183 27 1 3.3049 -0.6469 -6.1669 28 1 1.4669 0.8022 -5.5320 29 1 3.7411 1.3958 -4.9350 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4819 2.3594 37 1 5.1715 -1.3617 2.5381 38 1 3.3285 1.4129 1.9027 39 1 3.5688 3.4003 0.8960 40 1 4.8618 4.5972 0.6442 41 1 4.6025 3.3026 -0.5498 42 1 6.2167 2.3695 3.3010 43 1 5.8051 4.0521 2.8926 44 1 4.5115 2.8555 3.1447 45 1 6.3406 4.3212 -0.7059 46 1 8.6172 4.6679 -1.5756 47 1 10.5063 3.4100 -0.6211 48 1 10.1197 1.8031 1.2034 49 1 2.2489 -1.6318 -1.1526 50 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135682979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:58 Heat of formation + Delta-G solvation = -57.958544 kcal Electronic energy + Delta-G solvation = -31037.348288 eV Core-core repulsion = 26978.868504 eV Total energy + Delta-G solvation = -4058.479783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.76402 -40.36476 -38.73339 -36.94661 -35.28842 -34.55842 -32.28113 -30.86629 -30.51962 -29.43388 -28.27657 -27.56878 -26.35047 -24.28829 -23.39890 -22.53606 -22.33470 -20.81617 -19.84985 -19.49688 -17.72430 -17.34685 -16.89402 -16.31303 -15.98372 -15.43703 -15.37400 -14.90941 -14.54517 -14.32013 -14.13444 -14.01220 -13.93798 -13.54670 -13.19967 -13.13302 -13.08595 -12.61366 -12.36734 -12.28204 -12.20295 -12.10132 -12.04977 -11.93672 -11.66891 -11.66647 -11.63057 -11.16090 -10.97716 -10.74581 -10.68634 -10.45098 -10.41805 -10.06821 -9.91936 -9.39003 -9.09376 -8.94284 -8.84432 -8.65103 -8.57780 -6.94855 -6.01070 -3.00204 1.17069 1.23515 3.02174 3.37047 3.54109 3.58814 3.70362 3.75804 4.30223 4.36150 4.63544 4.73537 4.83323 4.86228 4.96689 5.01687 5.13122 5.23796 5.35175 5.39066 5.42646 5.44228 5.56675 5.63833 5.65832 5.67895 5.70934 5.82916 5.85327 5.91758 5.96175 5.97088 6.05136 6.07954 6.09277 6.19733 6.24159 6.32461 6.34585 6.39531 6.39975 6.50519 6.66727 6.80326 6.89982 6.93107 7.02689 7.84181 7.86762 8.61508 8.83913 9.31393 10.17599 10.32526 11.47359 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.004501 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.141349 B = 6219.432563 C = 7705.112002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.146 3.854 6 H 0.100 0.900 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.526 3.474 10 O -0.522 6.522 11 C -0.041 4.041 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.093 4.093 15 C -0.086 4.086 16 C -0.134 4.134 17 C -0.093 4.093 18 C -0.160 4.160 19 C 0.130 3.870 20 F -0.133 7.133 21 N -0.731 5.731 22 C -0.324 4.324 23 H 0.060 0.940 24 C -0.044 4.044 25 N -0.943 5.943 26 Si 1.075 2.925 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.392 0.608 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.136 0.864 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.365 0.635 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 13.204 14.677 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.042 3.958 6 H 0.118 0.882 7 C -0.219 4.219 8 N -0.365 5.365 9 C 0.311 3.689 10 O -0.397 6.397 11 C -0.044 4.044 12 C -0.200 4.200 13 C -0.200 4.200 14 C -0.095 4.095 15 C -0.104 4.104 16 C -0.153 4.153 17 C -0.112 4.112 18 C -0.179 4.179 19 C 0.111 3.889 20 F -0.112 7.112 21 N -0.374 5.374 22 C -0.455 4.455 23 H 0.078 0.922 24 C -0.242 4.242 25 N -0.589 5.589 26 Si 0.906 3.094 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.748 12.671 12.700 19.541 hybrid contribution -0.851 -0.065 1.916 2.098 sum 6.896 12.606 14.616 20.496 Atomic orbital electron populations 1.22445 0.99537 1.00699 0.99821 1.20142 0.91450 0.95523 0.86084 0.93523 1.22187 0.93948 1.02039 0.98910 1.20967 0.94804 0.80422 0.99618 0.88160 1.22179 1.01665 0.99997 0.98048 1.45859 1.16379 1.11347 1.62888 1.20063 0.82029 0.88989 0.77819 1.90733 1.50888 1.56037 1.42007 1.19656 0.92941 0.94212 0.97591 1.21951 0.97997 0.98795 1.01284 1.21933 1.02965 1.02532 0.92557 1.19404 0.93015 0.98673 0.98366 1.21072 0.97689 0.97054 0.94592 1.21147 0.92568 1.00904 1.00633 1.20969 0.99435 0.95354 0.95400 1.21086 0.95575 1.01549 0.99706 1.17420 0.93623 0.89791 0.88061 1.91461 1.95561 1.66708 1.57423 1.42396 1.79106 1.09658 1.06241 1.19924 1.41722 0.94787 0.89073 0.92175 1.25647 0.99516 0.97536 1.01471 1.70868 1.51205 1.08431 1.28396 0.83314 0.75699 0.74418 0.75935 1.21065 1.22424 1.22399 0.92864 0.93702 0.94641 0.91979 0.90863 0.93121 0.91928 0.92431 0.77429 0.91468 0.91158 0.90929 0.91343 0.91373 0.91574 0.84606 0.85413 0.85305 0.85033 0.80145 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.18 3.41 2.84 -67.93 -0.19 3.22 16 3 H 0.05 0.92 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -2.05 4.29 -26.73 -0.11 -2.17 16 5 C 0.15 2.44 2.52 -67.93 -0.17 2.27 16 6 H 0.10 2.21 7.05 -51.93 -0.37 1.84 16 7 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 8 N -0.71 -10.81 4.23 -53.81 -0.23 -11.03 16 9 C 0.53 9.06 5.89 -10.98 -0.06 9.00 16 10 O -0.52 -11.50 14.25 5.56 0.08 -11.42 16 11 C -0.04 -0.54 0.61 -156.81 -0.10 -0.64 16 12 C -0.14 -1.65 7.03 37.16 0.26 -1.39 16 13 C -0.14 -1.49 8.16 37.16 0.30 -1.19 16 14 C -0.09 -1.34 4.37 -104.55 -0.46 -1.79 16 15 C -0.09 -1.08 8.98 -39.59 -0.36 -1.44 16 16 C -0.13 -1.50 10.05 -39.57 -0.40 -1.90 16 17 C -0.09 -1.03 10.04 -39.59 -0.40 -1.43 16 18 C -0.16 -2.05 10.03 -39.51 -0.40 -2.44 16 19 C 0.13 1.96 6.14 -39.42 -0.24 1.72 16 20 F -0.13 -2.16 13.81 2.25 0.03 -2.13 16 21 N -0.73 -18.05 4.49 -53.43 -0.24 -18.29 16 22 C -0.32 -9.13 9.93 -15.06 -0.15 -9.28 16 23 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 24 C -0.04 -1.31 5.50 -17.43 -0.10 -1.40 16 25 N -0.94 -29.94 13.70 55.49 0.76 -29.18 16 26 Si 1.07 26.79 29.92 -169.99 -5.09 21.71 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.39 4.76 7.44 -40.82 -0.30 4.45 16 39 H 0.07 0.70 7.56 -51.93 -0.39 0.30 16 40 H 0.07 0.62 7.52 -51.93 -0.39 0.23 16 41 H 0.07 1.00 7.51 -51.93 -0.39 0.61 16 42 H 0.07 0.80 6.28 -51.93 -0.33 0.48 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 45 H 0.14 1.46 5.90 -52.49 -0.31 1.15 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.37 9.50 6.63 -40.82 -0.27 9.23 16 50 H 0.25 7.97 6.77 -40.82 -0.28 7.69 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -35.54 400.14 -8.61 -44.15 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -8.09 Total: 13.57 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.86 Total: -13.40 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.29 Total: -58.51 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -5.09 Total: 21.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.54 -8.61 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135682979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.813 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds