Wall clock time and date at job start Tue Mar 31 2020 20:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21272 * 120.00339 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99511 * 180.02562 * 9 8 5 12 12 C 1.53001 * 109.46973 * 299.99638 * 11 9 8 13 13 C 1.52999 * 109.47298 * 59.99960 * 11 9 8 14 14 C 1.50700 * 109.46616 * 179.97438 * 11 9 8 15 15 C 1.38227 * 120.00931 * 120.00318 * 14 11 9 16 16 C 1.38226 * 120.02402 * 179.97438 * 15 14 11 17 17 C 1.38273 * 120.04929 * 0.02562 * 16 15 14 18 18 C 1.38174 * 120.02844 * 0.02562 * 17 16 15 19 19 C 1.38436 * 120.01627 * 299.72036 * 14 11 9 20 20 F 1.35102 * 120.02459 * 0.02562 * 19 14 11 21 21 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 33 33 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 34 34 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 35 35 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 36 36 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 37 37 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 38 38 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 39 39 H 1.09005 * 109.46675 * 60.00456 * 12 11 9 40 40 H 1.09000 * 109.46793 * 179.97438 * 12 11 9 41 41 H 1.08994 * 109.47539 * 300.00237 * 12 11 9 42 42 H 1.09002 * 109.47126 * 59.99895 * 13 11 9 43 43 H 1.08996 * 109.46867 * 179.97438 * 13 11 9 44 44 H 1.09001 * 109.47052 * 299.99800 * 13 11 9 45 45 H 1.07994 * 119.98688 * 359.97438 * 15 14 11 46 46 H 1.07994 * 119.97243 * 179.97438 * 16 15 14 47 47 H 1.08003 * 119.98227 * 179.97438 * 17 16 15 48 48 H 1.07997 * 120.01539 * 179.97438 * 18 17 16 49 49 H 0.97004 * 119.99747 * 265.00379 * 21 2 1 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9355 0.4341 0.5730 11 6 5.5555 2.6563 1.2709 12 6 4.5769 3.5536 0.5105 13 6 5.5195 3.0087 2.7593 14 6 6.9494 2.8680 0.7386 15 6 7.1685 3.7692 -0.2864 16 6 8.4470 3.9639 -0.7745 17 6 9.5079 3.2573 -0.2386 18 6 9.2910 2.3552 0.7853 19 6 8.0116 2.1643 1.2798 20 9 7.7993 1.2871 2.2851 21 7 2.0183 -0.6906 -1.1962 22 6 2.1490 -0.0075 -2.3758 23 1 1.8925 1.0405 -2.4242 24 6 2.6112 -0.6619 -3.5093 25 7 2.9290 -1.9378 -3.4489 26 14 2.7902 0.2701 -5.1183 27 1 3.3049 -0.6469 -6.1669 28 1 1.4669 0.8022 -5.5320 29 1 3.7411 1.3958 -4.9350 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4819 2.3594 37 1 5.1715 -1.3617 2.5381 38 1 3.3285 1.4129 1.9027 39 1 3.5688 3.4003 0.8960 40 1 4.8618 4.5972 0.6442 41 1 4.6025 3.3026 -0.5498 42 1 6.2167 2.3695 3.3010 43 1 5.8051 4.0521 2.8926 44 1 4.5115 2.8555 3.1447 45 1 6.3406 4.3212 -0.7059 46 1 8.6172 4.6679 -1.5756 47 1 10.5063 3.4100 -0.6211 48 1 10.1197 1.8031 1.2034 49 1 2.2489 -1.6318 -1.1526 50 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135682979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:57 Heat of formation + Delta-G solvation = -80.326120 kcal Electronic energy + Delta-G solvation = -31038.318219 eV Core-core repulsion = 26978.868504 eV Total energy + Delta-G solvation = -4059.449714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.88661 -41.55031 -39.82520 -38.43845 -36.40255 -36.24016 -34.13411 -32.10449 -31.52925 -30.46867 -30.13987 -28.44097 -27.68597 -25.58789 -25.26767 -23.67237 -23.31842 -22.18764 -21.35685 -20.68835 -19.44329 -18.74679 -18.03403 -17.47097 -17.15706 -16.74898 -16.50621 -16.47673 -16.02605 -15.76279 -15.48100 -15.26741 -15.09072 -14.97857 -14.66256 -14.47443 -14.18612 -13.72670 -13.58161 -13.41535 -13.29022 -13.21410 -13.17429 -13.09130 -12.93712 -12.87619 -12.77296 -12.54669 -12.51195 -12.19542 -12.09636 -11.92687 -11.87729 -11.65572 -11.57970 -11.17784 -10.90509 -10.69885 -10.00902 -9.91145 -9.56325 -9.04984 -8.34117 -5.25372 0.21521 0.27149 1.51785 1.63133 1.72433 1.78159 2.21207 2.70149 2.71638 3.33512 3.38372 3.45069 3.64525 3.71092 3.81794 3.91164 3.95556 4.01407 4.06014 4.16123 4.28867 4.38766 4.44560 4.45553 4.59156 4.65633 4.69584 4.70538 4.73529 4.77291 4.79565 4.84803 4.93396 4.96010 5.00758 5.08226 5.13903 5.14029 5.19012 5.25019 5.29017 5.34605 5.40067 5.47480 5.54128 5.59200 5.65921 5.97403 6.53117 6.62006 7.15929 7.36071 8.06427 8.18421 9.18159 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.004501 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.141349 B = 6219.432563 C = 7705.112002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.038 0.962 7 C -0.150 4.150 8 N -0.702 5.702 9 C 0.517 3.483 10 O -0.581 6.581 11 C -0.037 4.037 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.114 4.114 15 C -0.099 4.099 16 C -0.134 4.134 17 C -0.092 4.092 18 C -0.173 4.173 19 C 0.095 3.905 20 F -0.150 7.150 21 N -0.744 5.744 22 C -0.311 4.311 23 H 0.063 0.937 24 C -0.111 4.111 25 N -0.981 5.981 26 Si 1.118 2.882 27 H -0.296 1.296 28 H -0.273 1.273 29 H -0.283 1.283 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.410 0.590 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.143 0.857 49 H 0.354 0.646 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 16.184 16.004 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.062 0.938 4 C -0.157 4.157 5 C 0.045 3.955 6 H 0.057 0.943 7 C -0.208 4.208 8 N -0.354 5.354 9 C 0.303 3.697 10 O -0.460 6.460 11 C -0.040 4.040 12 C -0.196 4.196 13 C -0.193 4.193 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.192 4.192 19 C 0.076 3.924 20 F -0.129 7.129 21 N -0.386 5.386 22 C -0.443 4.443 23 H 0.081 0.919 24 C -0.302 4.302 25 N -0.630 5.630 26 Si 0.944 3.056 27 H -0.223 1.223 28 H -0.199 1.199 29 H -0.210 1.210 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.169 0.831 46 H 0.176 0.824 47 H 0.179 0.821 48 H 0.161 0.839 49 H 0.186 0.814 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.626 15.713 14.101 22.128 hybrid contribution -0.506 -0.954 1.561 1.898 sum 6.120 14.759 15.662 22.374 Atomic orbital electron populations 1.22290 0.97619 1.00747 1.00827 1.20447 0.92580 0.95230 0.85521 0.93760 1.22091 0.92696 1.02114 0.98761 1.20750 0.95495 0.81480 0.97825 0.94320 1.22069 1.00108 1.00198 0.98440 1.45753 1.16248 1.11114 1.62236 1.20909 0.81736 0.90447 0.76566 1.90701 1.52631 1.58002 1.44683 1.19706 0.93011 0.91507 0.99759 1.21970 0.98308 1.00165 0.99196 1.21927 1.03888 1.03392 0.90142 1.19680 0.93315 0.99354 0.99203 1.21395 0.99043 0.97053 0.94183 1.21589 0.91976 1.00824 1.00750 1.21390 1.01108 0.94155 0.94322 1.21404 0.95234 1.02212 1.00315 1.17858 0.95037 0.90650 0.88856 1.91406 1.95761 1.67486 1.58215 1.42631 1.79426 1.09303 1.07213 1.20248 1.38980 0.94878 0.90177 0.91920 1.26990 1.00349 0.97694 1.05138 1.70979 1.54390 1.09789 1.27837 0.82761 0.76931 0.73575 0.72371 1.22265 1.19880 1.20961 0.95198 0.94149 0.90229 0.87307 0.90837 0.89746 0.91351 0.94915 0.75301 0.90085 0.87953 0.93704 0.93093 0.89201 0.89386 0.83069 0.82375 0.82063 0.83922 0.81428 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.49 71.98 0.68 -4.42 16 2 C 0.17 6.29 2.84 44.99 0.13 6.42 16 3 H 0.04 1.66 7.56 -2.39 -0.02 1.65 16 4 C -0.12 -3.43 4.29 30.59 0.13 -3.30 16 5 C 0.15 5.02 2.52 44.99 0.11 5.13 16 6 H 0.04 1.81 7.05 -2.39 -0.02 1.79 16 7 C -0.15 -4.28 9.48 71.98 0.68 -3.60 16 8 N -0.70 -20.81 4.23 -442.54 -1.87 -22.69 16 9 C 0.52 18.20 5.89 87.66 0.52 18.71 16 10 O -0.58 -27.28 14.25 -3.01 -0.04 -27.32 16 11 C -0.04 -0.95 0.61 -53.67 -0.03 -0.99 16 12 C -0.14 -2.95 7.03 71.98 0.51 -2.45 16 13 C -0.14 -2.62 8.16 71.98 0.59 -2.04 16 14 C -0.11 -3.28 4.37 -19.82 -0.09 -3.36 16 15 C -0.10 -2.38 8.98 22.26 0.20 -2.18 16 16 C -0.13 -2.72 10.05 22.28 0.22 -2.50 16 17 C -0.09 -1.89 10.04 22.26 0.22 -1.66 16 18 C -0.17 -4.44 10.03 22.31 0.22 -4.22 16 19 C 0.10 2.95 6.14 22.38 0.14 3.09 16 20 F -0.15 -5.18 13.81 44.97 0.62 -4.56 16 21 N -0.74 -37.45 4.49 -322.95 -1.45 -38.90 16 22 C -0.31 -17.77 9.93 84.03 0.83 -16.94 16 23 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 24 C -0.11 -6.72 5.50 84.86 0.47 -6.26 16 25 N -0.98 -64.63 13.70 21.65 0.30 -64.34 16 26 Si 1.12 54.64 29.92 68.60 2.05 56.69 16 27 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.41 8.91 7.44 -92.71 -0.69 8.22 16 39 H 0.08 1.45 7.56 -2.38 -0.02 1.43 16 40 H 0.10 1.50 7.52 -2.39 -0.02 1.48 16 41 H 0.04 1.20 7.51 -2.39 -0.02 1.18 16 42 H 0.05 1.18 6.28 -2.39 -0.01 1.16 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 1.26 7.56 -2.39 -0.02 1.24 16 45 H 0.15 3.01 5.90 -2.91 -0.02 2.99 16 46 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 48 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 49 H 0.35 19.24 6.63 -92.71 -0.61 18.63 16 50 H 0.24 15.91 6.77 -92.71 -0.63 15.28 16 Total: -1.00 -83.96 400.14 4.92 -79.04 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.22 Total: 42.63 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 5.54 Total: -20.56 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -3.03 Total: -125.93 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.04 Total: -27.32 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.62 Total: -4.56 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 2.05 Total: 56.69 kcal Total: -83.96 4.92 -79.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135682979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.291 kcal (2) G-P(sol) polarization free energy of solvation -83.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds