Wall clock time and date at job start Tue Mar 31 2020 20:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46812 * 2 1 4 4 C 1.52996 * 109.47125 * 240.00438 * 2 1 3 5 5 C 1.52997 * 109.47427 * 65.87731 * 4 2 1 6 6 H 1.09002 * 109.46841 * 304.09217 * 5 4 2 7 7 C 1.53000 * 109.47336 * 184.09461 * 5 4 2 8 8 N 1.46500 * 109.47540 * 64.09709 * 5 4 2 9 9 C 1.36932 * 120.00048 * 208.83560 * 8 5 4 10 10 H 1.07999 * 120.00535 * 5.04627 * 9 8 5 11 11 C 1.38811 * 119.99955 * 185.04642 * 9 8 5 12 12 N 1.31615 * 120.00132 * 5.06633 * 11 9 8 13 13 Si 1.86798 * 120.00058 * 185.06939 * 11 9 8 14 14 H 1.48502 * 109.47620 * 89.99863 * 13 11 9 15 15 H 1.48506 * 109.47032 * 210.00192 * 13 11 9 16 16 H 1.48506 * 109.46970 * 329.99764 * 13 11 9 17 17 N 1.46495 * 109.47636 * 119.99560 * 2 1 3 18 18 C 1.34770 * 120.00285 * 278.90620 * 17 2 1 19 19 O 1.21282 * 120.00208 * 354.96435 * 18 17 2 20 20 C 1.50709 * 119.99901 * 174.96942 * 18 17 2 21 21 C 1.52999 * 109.46655 * 307.77527 * 20 18 17 22 22 C 1.53000 * 109.46889 * 187.77799 * 20 18 17 23 23 C 1.50698 * 109.47186 * 67.77780 * 20 18 17 24 24 C 1.38247 * 119.97408 * 177.13050 * 23 20 18 25 25 C 1.38197 * 120.02563 * 180.23090 * 24 23 20 26 26 C 1.38461 * 119.97144 * 359.51129 * 25 24 23 27 27 F 1.35104 * 120.02099 * 180.20487 * 26 25 24 28 28 C 1.38455 * 119.95318 * 0.48973 * 26 25 24 29 29 C 1.38200 * 119.97087 * 359.74353 * 28 26 25 30 30 H 1.09000 * 109.47264 * 299.99589 * 1 2 3 31 31 H 1.08995 * 109.47225 * 59.99927 * 1 2 3 32 32 H 1.09003 * 109.46812 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47406 * 185.87593 * 4 2 1 34 34 H 1.09003 * 109.47166 * 305.87243 * 4 2 1 35 35 H 1.09000 * 109.47647 * 300.00304 * 7 5 4 36 36 H 1.09006 * 109.46979 * 59.99670 * 7 5 4 37 37 H 1.09000 * 109.47290 * 179.97438 * 7 5 4 38 38 H 0.96999 * 119.99755 * 28.82319 * 8 5 4 39 39 H 0.97003 * 120.00465 * 179.97438 * 12 11 9 40 40 H 0.97008 * 119.99701 * 98.89961 * 17 2 1 41 41 H 1.09007 * 109.46820 * 185.05858 * 21 20 18 42 42 H 1.08997 * 109.47661 * 305.05843 * 21 20 18 43 43 H 1.09001 * 109.47109 * 65.06563 * 21 20 18 44 44 H 1.08998 * 109.47337 * 299.99602 * 22 20 18 45 45 H 1.09000 * 109.47349 * 59.99792 * 22 20 18 46 46 H 1.08997 * 109.46840 * 180.02562 * 22 20 18 47 47 H 1.08000 * 119.98285 * 359.95795 * 24 23 20 48 48 H 1.07994 * 120.01288 * 179.72445 * 25 24 23 49 49 H 1.07994 * 120.01612 * 179.72381 * 28 26 25 50 50 H 1.08003 * 119.98925 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6542 0.0804 -2.4941 6 1 0.5753 0.2347 -2.5068 7 6 2.0740 -0.6904 -3.7473 8 7 2.3330 1.3784 -2.4690 9 6 1.7594 2.4628 -3.0773 10 1 0.7708 2.3823 -3.5045 11 6 2.4487 3.6658 -3.1450 12 7 3.6904 3.7379 -2.7145 13 14 1.6140 5.1824 -3.8469 14 1 0.9302 5.9212 -2.7552 15 1 2.6321 6.0608 -4.4770 16 1 0.6160 4.7707 -4.8667 17 7 2.0184 -0.6905 1.1961 18 6 2.0728 -0.0396 2.3750 19 8 1.8047 1.1420 2.4283 20 6 2.4669 -0.7801 3.6271 21 6 1.5984 -2.0310 3.7744 22 6 2.2637 0.1278 4.8417 23 6 3.9164 -1.1825 3.5376 24 6 4.5217 -1.8255 4.6012 25 6 5.8522 -2.1907 4.5221 26 6 6.5762 -1.9214 3.3730 27 9 7.8759 -2.2817 3.2930 28 6 5.9690 -1.2773 2.3084 29 6 4.6397 -0.9087 2.3916 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1249 -0.8132 -1.1983 34 1 1.5933 -1.7140 -1.3035 35 1 3.1529 -0.8449 -3.7346 36 1 1.5689 -1.6562 -3.7660 37 1 1.7987 -0.1196 -4.6342 38 1 3.1887 1.4696 -2.0214 39 1 4.1722 4.5785 -2.7621 40 1 2.3027 -1.6163 1.1397 41 1 1.8207 -2.5180 4.7239 42 1 0.5461 -1.7480 3.7489 43 1 1.8097 -2.7186 2.9553 44 1 2.8824 1.0190 4.7368 45 1 1.2153 0.4189 4.9065 46 1 2.5491 -0.4076 5.7472 47 1 3.9557 -2.0385 5.4960 48 1 6.3260 -2.6890 5.3548 49 1 6.5340 -1.0628 1.4134 50 1 4.1656 -0.4067 1.5612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135952612.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:12 Heat of formation + Delta-G solvation = -61.142675 kcal Electronic energy + Delta-G solvation = -30025.894791 eV Core-core repulsion = 25967.276933 eV Total energy + Delta-G solvation = -4058.617857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.05283 -40.85168 -38.81061 -37.05788 -35.15277 -34.59907 -32.29736 -31.43333 -30.22451 -29.61862 -28.55685 -27.36121 -26.32025 -24.61299 -23.62138 -23.04037 -22.37672 -20.90749 -19.86899 -19.21060 -18.05354 -17.39208 -17.06561 -16.44859 -15.81690 -15.73208 -15.60340 -15.07955 -14.84606 -14.28032 -14.15894 -13.93396 -13.73107 -13.54867 -13.40579 -13.32393 -13.17016 -13.01391 -12.67259 -12.56205 -12.18824 -12.13623 -12.07660 -11.93704 -11.71890 -11.37583 -11.32545 -11.24845 -11.10844 -10.96251 -10.83277 -10.62759 -10.39892 -10.19208 -9.97350 -9.60910 -9.48091 -9.33565 -8.86706 -8.81642 -8.77157 -6.92425 -5.72309 -3.00935 0.88100 1.00182 2.73092 3.25582 3.33117 3.47230 3.52171 3.53698 4.04940 4.31965 4.37412 4.63212 4.64511 4.66319 4.78608 4.90844 5.04024 5.16006 5.20708 5.34831 5.36027 5.47042 5.57352 5.58688 5.62874 5.66722 5.67874 5.75858 5.78998 5.84399 5.84977 5.92533 6.02111 6.06268 6.08424 6.12374 6.19012 6.24017 6.30343 6.43535 6.50427 6.54728 6.64968 6.72222 6.82849 6.92273 7.08680 7.65696 7.74450 8.37823 8.46170 9.57015 10.14060 10.48698 11.50000 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003143 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.756950 B = 8906.590669 C = 9506.153304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.106 0.894 4 C -0.129 4.129 5 C 0.174 3.826 6 H 0.054 0.946 7 C -0.164 4.164 8 N -0.721 5.721 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.903 3.097 14 H -0.290 1.290 15 H -0.293 1.293 16 H -0.283 1.283 17 N -0.726 5.726 18 C 0.521 3.479 19 O -0.523 6.523 20 C -0.041 4.041 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.082 4.082 24 C -0.081 4.081 25 C -0.153 4.153 26 C 0.094 3.906 27 F -0.141 7.141 28 C -0.143 4.143 29 C -0.091 4.091 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.382 0.618 39 H 0.254 0.746 40 H 0.394 0.606 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.139 0.861 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -17.561 15.871 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.124 0.876 4 C -0.168 4.168 5 C 0.063 3.937 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.363 5.363 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.734 3.266 14 H -0.217 1.217 15 H -0.219 1.219 16 H -0.208 1.208 17 N -0.378 5.378 18 C 0.306 3.694 19 O -0.398 6.398 20 C -0.045 4.045 21 C -0.195 4.195 22 C -0.183 4.183 23 C -0.083 4.083 24 C -0.099 4.099 25 C -0.172 4.172 26 C 0.075 3.925 27 F -0.120 7.120 28 C -0.162 4.162 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.157 0.843 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.846 -16.569 15.793 22.906 hybrid contribution 0.404 0.382 -0.433 0.704 sum -0.443 -16.187 15.360 22.320 Atomic orbital electron populations 1.22137 0.95657 1.00907 1.02789 1.21086 0.93931 0.98874 0.82374 0.87609 1.22135 1.01097 0.98582 0.95009 1.20232 0.96570 0.86397 0.90486 0.92833 1.22447 1.00621 0.98471 1.00933 1.42429 1.24309 1.03807 1.65737 1.19202 0.98837 0.89190 1.29742 0.91306 1.24711 0.95978 0.98086 1.01917 1.69669 1.09570 1.25595 1.52988 0.86258 0.78245 0.83593 0.78502 1.21719 1.21922 1.20834 1.46375 1.66496 1.15878 1.09017 1.20232 0.77271 0.87421 0.84493 1.90764 1.48053 1.15068 1.85913 1.19823 0.92238 0.96981 0.95433 1.21893 0.99434 0.95334 1.02825 1.21703 1.03210 0.99091 0.94336 1.19609 0.94627 0.99441 0.94628 1.20754 0.93676 0.97204 0.98291 1.21088 0.95024 1.03583 0.97478 1.17776 0.78781 1.00038 0.95873 1.91503 1.33972 1.89808 1.96703 1.21223 0.95930 1.00173 0.98882 1.21384 0.93464 0.97889 0.98227 0.92877 0.90731 0.93439 0.91759 0.92081 0.93606 0.94686 0.92747 0.78412 0.93597 0.77162 0.91269 0.91466 0.91863 0.91342 0.91499 0.91943 0.84885 0.84725 0.84335 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.21 37.16 0.34 -1.98 16 2 C 0.14 2.19 2.59 -67.93 -0.18 2.02 16 3 H 0.11 2.19 7.06 -51.93 -0.37 1.82 16 4 C -0.13 -1.91 4.41 -26.73 -0.12 -2.03 16 5 C 0.17 3.22 2.77 -67.93 -0.19 3.04 16 6 H 0.05 1.01 6.32 -51.93 -0.33 0.68 16 7 C -0.16 -2.86 9.52 37.16 0.35 -2.50 16 8 N -0.72 -17.35 4.39 -53.43 -0.23 -17.58 16 9 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -28.20 13.08 55.49 0.73 -27.47 16 13 Si 0.90 22.64 29.56 -169.99 -5.02 17.61 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.73 -9.15 3.49 -53.81 -0.19 -9.34 16 18 C 0.52 7.32 5.09 -10.98 -0.06 7.26 16 19 O -0.52 -9.91 15.68 5.56 0.09 -9.82 16 20 C -0.04 -0.42 0.72 -156.81 -0.11 -0.54 16 21 C -0.14 -1.03 8.01 37.16 0.30 -0.73 16 22 C -0.13 -1.28 7.58 37.16 0.28 -1.00 16 23 C -0.08 -0.84 4.76 -104.62 -0.50 -1.33 16 24 C -0.08 -0.68 8.78 -39.59 -0.35 -1.03 16 25 C -0.15 -1.36 10.03 -39.51 -0.40 -1.76 16 26 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 27 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 28 C -0.14 -1.62 10.03 -39.52 -0.40 -2.02 16 29 C -0.09 -1.07 8.71 -39.59 -0.35 -1.41 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.20 6.51 -51.93 -0.34 0.86 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.38 9.93 7.87 -40.82 -0.32 9.60 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.39 3.90 7.47 -40.82 -0.30 3.60 16 41 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.43 7.44 -51.93 -0.39 0.04 16 44 H 0.07 0.83 8.01 -51.93 -0.42 0.42 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.46 7.23 -51.93 -0.38 0.08 16 47 H 0.13 0.78 7.16 -52.49 -0.38 0.41 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 50 H 0.14 1.87 5.57 -52.48 -0.29 1.58 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -32.24 403.62 -8.51 -40.74 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -8.10 Total: 11.71 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.89 Total: -10.33 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.24 -8.51 -40.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952612.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.400 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds