Wall clock time and date at job start Tue Mar 31 2020 20:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46812 * 2 1 4 4 C 1.52996 * 109.47125 * 240.00438 * 2 1 3 5 5 C 1.52997 * 109.47427 * 65.87731 * 4 2 1 6 6 H 1.09002 * 109.46841 * 304.09217 * 5 4 2 7 7 C 1.53000 * 109.47336 * 184.09461 * 5 4 2 8 8 N 1.46500 * 109.47540 * 64.09709 * 5 4 2 9 9 C 1.36932 * 120.00048 * 208.83560 * 8 5 4 10 10 H 1.07999 * 120.00535 * 5.04627 * 9 8 5 11 11 C 1.38811 * 119.99955 * 185.04642 * 9 8 5 12 12 N 1.31615 * 120.00132 * 5.06633 * 11 9 8 13 13 Si 1.86798 * 120.00058 * 185.06939 * 11 9 8 14 14 H 1.48502 * 109.47620 * 89.99863 * 13 11 9 15 15 H 1.48506 * 109.47032 * 210.00192 * 13 11 9 16 16 H 1.48506 * 109.46970 * 329.99764 * 13 11 9 17 17 N 1.46495 * 109.47636 * 119.99560 * 2 1 3 18 18 C 1.34770 * 120.00285 * 278.90620 * 17 2 1 19 19 O 1.21282 * 120.00208 * 354.96435 * 18 17 2 20 20 C 1.50709 * 119.99901 * 174.96942 * 18 17 2 21 21 C 1.52999 * 109.46655 * 307.77527 * 20 18 17 22 22 C 1.53000 * 109.46889 * 187.77799 * 20 18 17 23 23 C 1.50698 * 109.47186 * 67.77780 * 20 18 17 24 24 C 1.38247 * 119.97408 * 177.13050 * 23 20 18 25 25 C 1.38197 * 120.02563 * 180.23090 * 24 23 20 26 26 C 1.38461 * 119.97144 * 359.51129 * 25 24 23 27 27 F 1.35104 * 120.02099 * 180.20487 * 26 25 24 28 28 C 1.38455 * 119.95318 * 0.48973 * 26 25 24 29 29 C 1.38200 * 119.97087 * 359.74353 * 28 26 25 30 30 H 1.09000 * 109.47264 * 299.99589 * 1 2 3 31 31 H 1.08995 * 109.47225 * 59.99927 * 1 2 3 32 32 H 1.09003 * 109.46812 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47406 * 185.87593 * 4 2 1 34 34 H 1.09003 * 109.47166 * 305.87243 * 4 2 1 35 35 H 1.09000 * 109.47647 * 300.00304 * 7 5 4 36 36 H 1.09006 * 109.46979 * 59.99670 * 7 5 4 37 37 H 1.09000 * 109.47290 * 179.97438 * 7 5 4 38 38 H 0.96999 * 119.99755 * 28.82319 * 8 5 4 39 39 H 0.97003 * 120.00465 * 179.97438 * 12 11 9 40 40 H 0.97008 * 119.99701 * 98.89961 * 17 2 1 41 41 H 1.09007 * 109.46820 * 185.05858 * 21 20 18 42 42 H 1.08997 * 109.47661 * 305.05843 * 21 20 18 43 43 H 1.09001 * 109.47109 * 65.06563 * 21 20 18 44 44 H 1.08998 * 109.47337 * 299.99602 * 22 20 18 45 45 H 1.09000 * 109.47349 * 59.99792 * 22 20 18 46 46 H 1.08997 * 109.46840 * 180.02562 * 22 20 18 47 47 H 1.08000 * 119.98285 * 359.95795 * 24 23 20 48 48 H 1.07994 * 120.01288 * 179.72445 * 25 24 23 49 49 H 1.07994 * 120.01612 * 179.72381 * 28 26 25 50 50 H 1.08003 * 119.98925 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6542 0.0804 -2.4941 6 1 0.5753 0.2347 -2.5068 7 6 2.0740 -0.6904 -3.7473 8 7 2.3330 1.3784 -2.4690 9 6 1.7594 2.4628 -3.0773 10 1 0.7708 2.3823 -3.5045 11 6 2.4487 3.6658 -3.1450 12 7 3.6904 3.7379 -2.7145 13 14 1.6140 5.1824 -3.8469 14 1 0.9302 5.9212 -2.7552 15 1 2.6321 6.0608 -4.4770 16 1 0.6160 4.7707 -4.8667 17 7 2.0184 -0.6905 1.1961 18 6 2.0728 -0.0396 2.3750 19 8 1.8047 1.1420 2.4283 20 6 2.4669 -0.7801 3.6271 21 6 1.5984 -2.0310 3.7744 22 6 2.2637 0.1278 4.8417 23 6 3.9164 -1.1825 3.5376 24 6 4.5217 -1.8255 4.6012 25 6 5.8522 -2.1907 4.5221 26 6 6.5762 -1.9214 3.3730 27 9 7.8759 -2.2817 3.2930 28 6 5.9690 -1.2773 2.3084 29 6 4.6397 -0.9087 2.3916 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1249 -0.8132 -1.1983 34 1 1.5933 -1.7140 -1.3035 35 1 3.1529 -0.8449 -3.7346 36 1 1.5689 -1.6562 -3.7660 37 1 1.7987 -0.1196 -4.6342 38 1 3.1887 1.4696 -2.0214 39 1 4.1722 4.5785 -2.7621 40 1 2.3027 -1.6163 1.1397 41 1 1.8207 -2.5180 4.7239 42 1 0.5461 -1.7480 3.7489 43 1 1.8097 -2.7186 2.9553 44 1 2.8824 1.0190 4.7368 45 1 1.2153 0.4189 4.9065 46 1 2.5491 -0.4076 5.7472 47 1 3.9557 -2.0385 5.4960 48 1 6.3260 -2.6890 5.3548 49 1 6.5340 -1.0628 1.4134 50 1 4.1656 -0.4067 1.5612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135952612.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:12 Heat of formation + Delta-G solvation = -80.126883 kcal Electronic energy + Delta-G solvation = -30026.718008 eV Core-core repulsion = 25967.276933 eV Total energy + Delta-G solvation = -4059.441075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.90908 -41.84194 -39.78819 -38.47091 -36.17920 -36.02755 -34.12526 -32.33671 -31.55259 -30.39192 -30.32761 -28.06598 -27.61643 -25.82314 -25.36204 -23.83834 -23.42331 -22.13242 -21.18148 -20.40173 -19.27187 -18.86877 -18.19931 -17.39637 -16.91242 -16.74777 -16.62018 -16.57930 -15.97692 -15.76351 -15.36460 -15.16260 -15.02922 -14.64558 -14.49469 -14.32917 -14.14454 -14.04032 -13.87639 -13.61565 -13.53564 -13.24628 -13.10807 -12.97011 -12.88223 -12.83825 -12.77355 -12.51368 -12.24161 -12.13600 -12.09929 -12.06503 -11.91210 -11.80345 -11.54452 -11.52201 -10.92194 -10.66440 -10.11594 -10.00876 -9.58650 -8.96577 -7.91991 -5.18209 0.07993 0.22970 1.44150 1.46931 1.53699 1.62717 2.18254 2.54305 2.56933 3.25568 3.42475 3.48569 3.53013 3.83818 3.87182 3.91921 4.00312 4.03979 4.09987 4.20382 4.29339 4.35484 4.41442 4.54489 4.61831 4.74527 4.77178 4.80230 4.86164 4.86662 4.91042 4.92818 5.00162 5.01365 5.06706 5.11106 5.13795 5.20477 5.22597 5.29544 5.31341 5.34260 5.46649 5.48825 5.54831 5.59145 5.65359 5.87298 6.31021 6.59341 7.30593 7.36334 8.15407 8.36123 9.31506 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003143 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.756950 B = 8906.590669 C = 9506.153304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.148 3.852 3 H 0.046 0.954 4 C -0.115 4.115 5 C 0.165 3.835 6 H 0.054 0.946 7 C -0.155 4.155 8 N -0.732 5.732 9 C -0.229 4.229 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.963 3.037 14 H -0.294 1.294 15 H -0.298 1.298 16 H -0.266 1.266 17 N -0.709 5.709 18 C 0.516 3.484 19 O -0.582 6.582 20 C -0.032 4.032 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.082 4.082 24 C -0.068 4.068 25 C -0.142 4.142 26 C 0.079 3.921 27 F -0.149 7.149 28 C -0.157 4.157 29 C -0.110 4.110 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.368 0.632 39 H 0.247 0.753 40 H 0.412 0.588 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.172 0.828 48 H 0.164 0.836 49 H 0.131 0.869 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -21.109 17.632 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.064 0.936 4 C -0.154 4.154 5 C 0.056 3.944 6 H 0.072 0.928 7 C -0.215 4.215 8 N -0.372 5.372 9 C -0.361 4.361 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.793 3.207 14 H -0.222 1.222 15 H -0.225 1.225 16 H -0.191 1.191 17 N -0.361 5.361 18 C 0.303 3.697 19 O -0.461 6.461 20 C -0.035 4.035 21 C -0.192 4.192 22 C -0.184 4.184 23 C -0.083 4.083 24 C -0.086 4.086 25 C -0.160 4.160 26 C 0.060 3.940 27 F -0.128 7.128 28 C -0.176 4.176 29 C -0.128 4.128 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.199 0.801 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.189 0.811 48 H 0.181 0.819 49 H 0.149 0.851 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.168 -20.205 17.531 26.838 hybrid contribution 0.778 1.413 -0.953 1.874 sum -1.390 -18.792 16.577 25.098 Atomic orbital electron populations 1.22042 0.94703 1.02682 1.01184 1.20729 0.94537 0.96343 0.84063 0.93554 1.22000 1.01208 0.99689 0.92490 1.20535 0.96094 0.84736 0.92996 0.92766 1.22298 1.00647 0.99859 0.98724 1.42630 1.23934 1.05465 1.65193 1.19599 0.98708 0.90088 1.27730 0.90712 1.25461 0.96726 1.01007 1.03758 1.69828 1.11119 1.25646 1.55521 0.85285 0.77344 0.80203 0.77897 1.22163 1.22509 1.19071 1.46140 1.65701 1.16412 1.07888 1.21066 0.75875 0.86902 0.85856 1.90740 1.50769 1.17805 1.86833 1.19813 0.92946 0.97860 0.92902 1.21951 0.98515 0.93772 1.04999 1.21743 1.02290 0.98480 0.95852 1.19650 0.94357 0.99585 0.94701 1.21093 0.93527 0.95423 0.98522 1.21429 0.95043 1.02405 0.97166 1.17979 0.78711 1.00697 0.96621 1.91481 1.34569 1.89950 1.96805 1.21209 0.95987 1.01052 0.99353 1.21221 0.93851 0.99079 0.98663 0.94529 0.92316 0.89793 0.92073 0.87636 0.94199 0.90502 0.94983 0.80054 0.94453 0.75095 0.88200 0.91658 0.90793 0.94281 0.92205 0.88117 0.81077 0.81869 0.85075 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.21 71.98 0.66 -3.65 16 2 C 0.15 4.69 2.59 44.99 0.12 4.80 16 3 H 0.05 2.06 7.06 -2.39 -0.02 2.04 16 4 C -0.12 -3.27 4.41 30.59 0.13 -3.14 16 5 C 0.16 6.04 2.77 44.99 0.12 6.17 16 6 H 0.05 2.00 6.32 -2.39 -0.02 1.98 16 7 C -0.16 -5.15 9.52 71.98 0.69 -4.47 16 8 N -0.73 -36.42 4.39 -322.95 -1.42 -37.84 16 9 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 10 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.97 -61.52 13.08 21.65 0.28 -61.24 16 13 Si 0.96 47.91 29.56 68.60 2.03 49.94 16 14 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 15 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 N -0.71 -17.74 3.49 -442.54 -1.54 -19.28 16 18 C 0.52 14.79 5.09 87.66 0.45 15.23 16 19 O -0.58 -23.56 15.68 -3.04 -0.05 -23.61 16 20 C -0.03 -0.60 0.72 -53.67 -0.04 -0.64 16 21 C -0.14 -1.50 8.01 71.98 0.58 -0.92 16 22 C -0.13 -2.38 7.58 71.98 0.55 -1.83 16 23 C -0.08 -1.52 4.76 -19.86 -0.09 -1.61 16 24 C -0.07 -0.87 8.78 22.26 0.20 -0.67 16 25 C -0.14 -2.05 10.03 22.31 0.22 -1.83 16 26 C 0.08 1.63 7.30 22.37 0.16 1.79 16 27 F -0.15 -3.38 17.27 44.97 0.78 -2.61 16 28 C -0.16 -3.64 10.03 22.31 0.22 -3.41 16 29 C -0.11 -2.59 8.71 22.26 0.19 -2.39 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.88 6.51 -2.39 -0.02 1.87 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.37 20.18 7.87 -92.71 -0.73 19.45 16 39 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.41 7.44 7.47 -92.70 -0.69 6.75 16 41 H 0.10 0.55 7.74 -2.38 -0.02 0.54 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.68 7.44 -2.39 -0.02 0.67 16 44 H 0.04 0.96 8.01 -2.39 -0.02 0.94 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.08 7.23 -2.39 -0.02 1.06 16 47 H 0.17 0.91 7.16 -2.91 -0.02 0.89 16 48 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 49 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 50 H 0.12 3.32 5.57 -2.91 -0.02 3.31 16 Total: -1.00 -76.55 403.62 5.06 -71.49 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.47 Total: 35.82 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.46 Total: -12.67 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -2.68 Total: -118.36 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -76.55 5.06 -71.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135952612.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.641 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds