Wall clock time and date at job start Tue Mar 31 2020 20:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.53006 * 109.46822 * 239.99980 * 2 1 3 5 5 C 1.53000 * 109.46846 * 174.99943 * 4 2 1 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 5 4 2 8 8 N 1.46500 * 109.47023 * 65.00406 * 5 4 2 9 9 C 1.34777 * 120.00075 * 204.99547 * 8 5 4 10 10 O 1.21287 * 119.99865 * 0.02562 * 9 8 5 11 11 C 1.50699 * 120.00179 * 179.97438 * 9 8 5 12 12 C 1.50697 * 109.47104 * 180.02562 * 11 9 8 13 13 C 1.34856 * 125.89135 * 274.68961 * 12 11 9 14 14 C 1.40892 * 107.41604 * 179.88634 * 13 12 11 15 15 C 1.34854 * 107.41765 * 0.37747 * 14 13 12 16 16 N 1.36337 * 108.21831 * 359.77034 * 15 14 13 17 17 H 0.96999 * 125.63319 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.47242 * 120.00209 * 2 1 3 19 19 C 1.46896 * 111.00270 * 275.00050 * 18 2 1 20 20 C 1.50696 * 109.47397 * 180.02562 * 19 18 2 21 21 O 1.21294 * 119.99866 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00254 * 179.97438 * 20 19 18 23 23 C 1.37100 * 120.00105 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99791 * 0.02562 * 23 22 20 25 25 C 1.38954 * 119.99743 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99640 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00025 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47223 * 90.00141 * 27 25 23 29 29 H 1.48498 * 109.47078 * 209.99869 * 27 25 23 30 30 H 1.48502 * 109.47245 * 330.00194 * 27 25 23 31 31 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46611 * 299.99944 * 1 2 3 33 33 H 1.09004 * 109.47264 * 59.99463 * 1 2 3 34 34 H 1.09002 * 109.46824 * 55.00360 * 4 2 1 35 35 H 1.08991 * 109.47210 * 295.00444 * 4 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 7 5 4 37 37 H 1.08998 * 109.47533 * 59.99948 * 7 5 4 38 38 H 1.08996 * 109.47853 * 180.02562 * 7 5 4 39 39 H 0.96997 * 120.00274 * 24.99518 * 8 5 4 40 40 H 1.08999 * 109.47169 * 300.00043 * 11 9 8 41 41 H 1.08999 * 109.47104 * 60.00393 * 11 9 8 42 42 H 1.07997 * 126.28535 * 0.02911 * 13 12 11 43 43 H 1.08004 * 126.29009 * 180.12840 * 14 13 12 44 44 H 1.08000 * 125.88842 * 179.73101 * 15 14 13 45 45 H 1.00906 * 110.99864 * 38.95249 * 18 2 1 46 46 H 1.09005 * 109.46886 * 299.99829 * 19 18 2 47 47 H 1.08999 * 109.47293 * 59.99428 * 19 18 2 48 48 H 0.96999 * 119.99656 * 0.02562 * 22 20 19 49 49 H 0.96998 * 119.99630 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3343 -0.1825 9 6 5.3747 -0.9913 0.2732 10 8 5.9859 -0.0854 -0.2530 11 6 5.9802 -1.7325 1.4372 12 6 7.3386 -1.1582 1.7467 13 6 8.4983 -1.5070 1.1534 14 6 9.5198 -0.7301 1.7348 15 6 8.9466 0.0579 2.6670 16 7 7.6080 -0.2004 2.6789 17 1 6.9551 0.2270 3.2551 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2224 2.3469 20 6 2.5886 -0.5217 3.5557 21 8 2.8689 -1.6987 3.4698 22 7 2.7297 0.1205 4.7321 23 6 3.1896 -0.5566 5.8319 24 1 3.4392 -1.6045 5.7555 25 6 3.3346 0.1055 7.0450 26 7 3.7759 -0.5434 8.0990 27 14 2.9022 1.9179 7.1773 28 1 1.4729 2.0596 7.5544 29 1 3.7531 2.5553 8.2140 30 1 3.1368 2.5796 5.8687 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6053 -0.2617 -2.1370 35 1 1.7515 -1.7714 -1.2057 36 1 3.7721 -2.2741 -2.6701 37 1 3.6263 -0.6887 -3.4658 38 1 5.1507 -1.1486 -2.6700 39 1 3.6647 -2.0585 0.2385 40 1 5.3349 -1.6286 2.3094 41 1 6.0808 -2.7878 1.1833 42 1 8.6210 -2.2446 0.3741 43 1 10.5696 -0.7628 1.4832 44 1 9.4597 0.7702 3.2962 45 1 1.4495 -1.4980 1.4100 46 1 2.7589 1.0460 2.1182 47 1 1.0871 0.6162 2.5526 48 1 2.5052 1.0617 4.8008 49 1 3.8768 -0.0813 8.9458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146475367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:45 Heat of formation + Delta-G solvation = -29.950266 kcal Electronic energy + Delta-G solvation = -30393.459882 eV Core-core repulsion = 26356.114591 eV Total energy + Delta-G solvation = -4037.345291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77896 -39.43593 -38.59549 -37.27900 -34.89397 -34.02574 -32.13609 -31.78365 -31.16806 -30.49668 -29.96483 -26.98653 -26.43082 -26.12350 -23.83605 -21.84371 -20.88386 -20.29081 -20.07183 -19.63305 -19.46712 -18.43528 -17.25513 -16.73563 -16.09047 -16.03244 -15.36242 -15.09247 -14.84946 -14.58060 -14.32541 -13.92751 -13.75261 -13.46310 -13.33002 -13.21212 -13.07373 -12.85394 -12.77734 -12.60808 -12.42671 -12.26055 -12.22774 -12.08416 -11.91596 -11.86735 -11.58749 -11.36609 -11.27540 -11.13398 -10.89380 -10.74765 -10.68664 -10.07703 -9.67324 -9.43555 -8.81041 -8.59933 -8.46128 -8.29213 -8.10473 -7.64932 -6.41274 -3.93223 2.61537 2.93857 2.98488 3.07880 3.11474 3.32349 3.62494 3.63141 3.84609 3.99981 4.05768 4.52127 4.74792 4.92607 5.07800 5.11961 5.13636 5.19769 5.28551 5.39035 5.45328 5.48421 5.49793 5.53330 5.60529 5.64018 5.70901 5.76268 5.77859 5.79753 5.82189 5.90603 5.94683 6.00218 6.11301 6.13161 6.25927 6.56967 6.64973 6.92124 7.02909 7.37459 7.47270 7.50416 7.51757 7.94701 8.03089 8.04563 8.48475 8.71979 8.84184 9.31871 9.70573 10.71425 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.004997 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.201076 B = 5601.768311 C = 8608.412680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.153 3.847 6 H 0.079 0.921 7 C -0.164 4.164 8 N -0.696 5.696 9 C 0.522 3.478 10 O -0.550 6.550 11 C -0.077 4.077 12 C 0.049 3.951 13 C -0.193 4.193 14 C -0.205 4.205 15 C -0.017 4.017 16 N -0.547 5.547 17 H 0.415 0.585 18 N -0.657 5.657 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.566 6.566 22 N -0.590 5.590 23 C -0.307 4.307 24 H 0.120 0.880 25 C 0.044 3.956 26 N -0.878 5.878 27 Si 0.876 3.124 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.270 1.270 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.158 0.842 45 H 0.349 0.651 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.370 0.630 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 1.898 -17.012 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.047 3.953 6 H 0.097 0.903 7 C -0.222 4.222 8 N -0.348 5.348 9 C 0.308 3.692 10 O -0.428 6.428 11 C -0.118 4.118 12 C -0.065 4.065 13 C -0.218 4.218 14 C -0.230 4.230 15 C -0.148 4.148 16 N -0.140 5.140 17 H 0.252 0.748 18 N -0.289 5.289 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.448 6.448 22 N -0.229 5.229 23 C -0.435 4.435 24 H 0.138 0.862 25 C -0.160 4.160 26 N -0.517 5.517 27 Si 0.703 3.297 28 H -0.196 1.196 29 H -0.201 1.201 30 H -0.196 1.196 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.245 0.755 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.176 0.824 45 H 0.168 0.832 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.202 0.798 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.954 1.885 -17.266 17.395 hybrid contribution -1.843 1.571 1.130 2.672 sum -2.797 3.456 -16.136 16.737 Atomic orbital electron populations 1.22518 0.97378 1.02241 1.02063 1.21625 0.92191 0.98215 0.90832 0.90577 1.21917 0.94737 1.01552 0.97125 1.20690 0.91752 0.97216 0.85595 0.90334 1.22202 1.02126 1.00860 0.97028 1.45812 1.17645 1.37909 1.33445 1.20401 0.81247 0.83672 0.83904 1.90673 1.61754 1.30969 1.59447 1.20140 0.92577 1.00156 0.98915 1.19593 0.95183 0.95993 0.95756 1.20500 0.91855 1.05216 1.04193 1.20753 0.98842 1.01897 1.01542 1.21715 0.83314 1.05184 1.04609 1.41972 1.08460 1.32298 1.31316 0.74837 1.60248 1.57258 1.09083 1.02362 1.21713 0.99813 0.95919 0.91063 1.19707 0.84854 0.88246 0.83691 1.90541 1.54173 1.15762 1.84314 1.42246 1.59931 1.11068 1.09629 1.19402 1.40584 0.97882 0.85666 0.86207 1.25032 0.97375 0.98253 0.95306 1.69613 1.44677 1.36598 1.00843 0.86726 0.79398 0.85064 0.78511 1.19627 1.20120 1.19575 0.92271 0.92672 0.92238 0.90523 0.91136 0.92680 0.92275 0.92148 0.75507 0.86853 0.87586 0.85494 0.85317 0.82414 0.83172 0.89949 0.93901 0.79783 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.16 37.16 0.34 -1.20 16 2 C 0.08 0.79 2.59 -67.71 -0.18 0.61 16 3 H 0.08 0.80 7.80 -51.93 -0.41 0.39 16 4 C -0.11 -0.97 4.54 -26.73 -0.12 -1.09 16 5 C 0.15 1.67 2.57 -67.93 -0.17 1.49 16 6 H 0.08 1.03 7.58 -51.93 -0.39 0.64 16 7 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 8 N -0.70 -8.73 3.80 -53.81 -0.20 -8.94 16 9 C 0.52 8.14 7.79 -10.99 -0.09 8.06 16 10 O -0.55 -10.41 15.70 5.55 0.09 -10.32 16 11 C -0.08 -1.19 6.24 -29.04 -0.18 -1.37 16 12 C 0.05 0.82 5.66 -81.79 -0.46 0.35 16 13 C -0.19 -3.15 10.77 -39.78 -0.43 -3.58 16 14 C -0.21 -3.15 10.86 -39.78 -0.43 -3.59 16 15 C -0.02 -0.25 11.94 -16.75 -0.20 -0.45 16 16 N -0.55 -8.90 6.07 -9.12 -0.06 -8.96 16 17 H 0.42 6.50 8.96 -40.82 -0.37 6.13 16 18 N -0.66 -8.04 3.48 -107.99 -0.38 -8.42 16 19 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 20 C 0.45 8.98 7.82 -10.99 -0.09 8.89 16 21 O -0.57 -12.92 15.78 5.55 0.09 -12.84 16 22 N -0.59 -12.90 5.09 -10.96 -0.06 -12.95 16 23 C -0.31 -8.09 10.16 -14.93 -0.15 -8.24 16 24 H 0.12 3.63 7.39 -52.49 -0.39 3.24 16 25 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 26 N -0.88 -24.67 13.96 55.50 0.77 -23.90 16 27 Si 0.88 18.66 27.74 -169.99 -4.71 13.94 16 28 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 29 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 30 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.41 4.94 7.59 -40.82 -0.31 4.63 16 40 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 41 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.35 4.43 8.17 -39.29 -0.32 4.10 16 46 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 47 H 0.04 0.57 7.44 -51.93 -0.39 0.18 16 48 H 0.37 7.28 5.76 -40.82 -0.24 7.04 16 49 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -32.01 405.33 -8.13 -40.14 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -7.85 Total: 25.80 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.93 Total: 0.34 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.08 Total: -63.17 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.01 -8.13 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146475367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.190 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds