Wall clock time and date at job start Tue Mar 31 2020 20:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 H 1.09003 * 109.47077 * 305.00103 * 5 4 2 7 7 C 1.53005 * 109.47060 * 185.00123 * 5 4 2 8 8 N 1.46899 * 109.47255 * 65.00136 * 5 4 2 9 9 C 1.46896 * 111.00020 * 204.99829 * 8 5 4 10 10 C 1.50707 * 109.46998 * 179.97438 * 9 8 5 11 11 O 1.21290 * 119.99933 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99989 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99567 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00346 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00002 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47306 * 119.99764 * 17 15 13 20 20 H 1.48507 * 109.47003 * 239.99384 * 17 15 13 21 21 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 22 22 C 1.34784 * 119.99635 * 274.99773 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.50697 * 109.47266 * 180.02562 * 24 22 21 26 26 C 1.34855 * 125.88617 * 274.69053 * 25 24 22 27 27 C 1.40894 * 107.41406 * 179.88631 * 26 25 24 28 28 C 1.34856 * 107.41697 * 0.37345 * 27 26 25 29 29 N 1.36340 * 125.89085 * 94.99736 * 25 24 22 30 30 H 0.96991 * 125.64032 * 359.95615 * 29 25 24 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 33 33 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 34 34 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 35 35 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 36 36 H 1.09004 * 109.46888 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.46752 * 299.99738 * 7 5 4 38 38 H 1.09000 * 109.47149 * 59.99823 * 7 5 4 39 39 H 1.00904 * 110.99968 * 81.04093 * 8 5 4 40 40 H 1.08992 * 109.47537 * 299.99575 * 9 8 5 41 41 H 1.08999 * 109.47184 * 60.00186 * 9 8 5 42 42 H 0.97003 * 120.00486 * 0.02562 * 12 10 9 43 43 H 0.96994 * 120.00317 * 180.02562 * 16 15 13 44 44 H 0.96995 * 120.00292 * 95.27206 * 21 2 1 45 45 H 1.09004 * 109.46932 * 300.00223 * 24 22 21 46 46 H 1.08997 * 109.47392 * 59.99562 * 24 22 21 47 47 H 1.07999 * 126.29391 * 0.02562 * 26 25 24 48 48 H 1.07998 * 126.28875 * 180.13191 * 27 26 25 49 49 H 1.07995 * 125.89221 * 179.73183 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1553 -1.3362 -0.1794 9 6 5.4833 -0.8025 0.1511 10 6 6.0559 -1.5668 1.3170 11 8 5.4203 -2.4677 1.8225 12 7 7.2746 -1.2498 1.7973 13 6 7.7957 -1.9453 2.8577 14 1 7.2294 -2.7470 3.3083 15 6 9.0520 -1.6182 3.3532 16 7 9.7408 -0.6425 2.8052 17 14 9.7615 -2.5655 4.7983 18 1 8.7948 -3.6066 5.2305 19 1 11.0351 -3.2109 4.3898 20 1 10.0188 -1.6316 5.9240 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8591 1.1585 2.4114 24 6 2.6500 -0.7286 3.5874 25 6 2.7000 0.2395 4.7412 26 6 3.7182 1.0760 5.0276 27 6 3.3561 1.8021 6.1795 28 6 2.1340 1.3756 6.5579 29 7 1.7262 0.4164 5.6789 30 1 0.8826 -0.0608 5.7146 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.7516 -1.7715 -1.2057 35 1 1.6054 -0.2617 -2.1370 36 1 5.1508 -1.1485 -2.6699 37 1 3.7722 -2.2741 -2.6700 38 1 3.6263 -0.6886 -3.4659 39 1 4.1997 -2.3269 -0.3657 40 1 6.1419 -0.9073 -0.7110 41 1 5.3959 0.2513 0.4156 42 1 7.7831 -0.5296 1.3929 43 1 10.6179 -0.4143 3.1509 44 1 2.2528 -1.6308 1.1515 45 1 1.9778 -1.5510 3.8324 46 1 3.6492 -1.1205 3.3978 47 1 4.6406 1.1734 4.4743 48 1 3.9500 2.5581 6.6715 49 1 1.5751 1.7318 7.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146475368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:50 Heat of formation + Delta-G solvation = -34.786017 kcal Electronic energy + Delta-G solvation = -30309.380442 eV Core-core repulsion = 26271.825457 eV Total energy + Delta-G solvation = -4037.554985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79387 -39.37811 -38.35108 -37.13940 -34.80768 -33.86442 -32.08538 -31.32480 -30.97758 -30.55014 -29.88638 -26.90850 -26.18722 -26.11419 -23.92156 -21.80579 -20.78169 -20.31176 -20.07818 -19.62328 -19.22344 -17.88061 -17.26970 -16.70608 -16.00088 -15.98204 -15.15594 -14.97339 -14.65400 -14.47730 -14.10224 -13.91040 -13.72712 -13.59308 -13.25681 -13.22567 -13.08287 -12.88424 -12.70475 -12.46124 -12.21504 -12.16051 -11.95925 -11.83239 -11.76510 -11.55290 -11.44029 -11.28229 -11.15803 -11.03763 -10.80317 -10.69751 -10.33468 -10.21299 -9.50615 -9.40771 -8.71651 -8.44497 -8.40429 -7.99075 -7.92935 -7.64123 -6.40487 -3.81169 2.56738 3.13491 3.17844 3.28939 3.35070 3.37429 3.59944 3.82577 3.90982 4.11096 4.35161 4.59905 4.95323 5.12768 5.15248 5.18962 5.26132 5.29193 5.31531 5.39183 5.45928 5.48466 5.51800 5.53549 5.71454 5.73756 5.80917 5.83307 5.87351 5.92068 6.04652 6.07979 6.08669 6.15869 6.19942 6.26542 6.30571 6.61311 6.77516 6.96059 7.21307 7.38415 7.51599 7.56483 7.64982 7.89868 8.05851 8.07361 8.61009 8.75263 9.18718 9.55342 10.05075 10.77187 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.004775 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.980425 B = 5862.967614 C = 8972.995835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.081 3.919 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.657 5.657 9 C 0.051 3.949 10 C 0.442 3.558 11 O -0.586 6.586 12 N -0.561 5.561 13 C -0.297 4.297 14 H 0.104 0.896 15 C 0.024 3.976 16 N -0.900 5.900 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.281 1.281 21 N -0.695 5.695 22 C 0.522 3.478 23 O -0.550 6.550 24 C -0.074 4.074 25 C 0.042 3.958 26 C -0.175 4.175 27 C -0.199 4.199 28 C -0.024 4.024 29 N -0.557 5.557 30 H 0.407 0.593 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.346 0.654 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.408 0.592 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.131 0.869 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 0.839 -5.519 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.029 4.029 6 H 0.095 0.905 7 C -0.242 4.242 8 N -0.289 5.289 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.471 6.471 12 N -0.197 5.197 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.541 5.541 17 Si 0.754 3.246 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.207 1.207 21 N -0.347 5.347 22 C 0.308 3.692 23 O -0.428 6.428 24 C -0.114 4.114 25 C -0.070 4.070 26 C -0.200 4.200 27 C -0.224 4.224 28 C -0.155 4.155 29 N -0.152 5.152 30 H 0.242 0.758 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.245 0.755 45 H 0.106 0.894 46 H 0.147 0.853 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.830 1.444 -4.605 17.508 hybrid contribution 1.224 -0.872 -0.327 1.538 sum -15.606 0.573 -4.932 16.377 Atomic orbital electron populations 1.22199 0.96281 1.01630 1.02017 1.20696 0.92593 0.97392 0.84622 0.90202 1.21914 0.94943 1.01288 0.97153 1.21620 0.94157 0.98719 0.88428 0.90500 1.22517 1.01611 1.01340 0.98695 1.60245 1.22262 1.08109 1.38308 1.21681 0.89774 0.99784 0.96957 1.19758 0.83153 0.87252 0.87092 1.90482 1.60619 1.33597 1.62430 1.41884 1.15051 1.32682 1.30110 1.19709 1.00076 1.14965 1.07927 0.87861 1.25243 0.96493 0.96897 0.99153 1.69615 1.13431 1.29103 1.41961 0.85843 0.78739 0.79350 0.80673 1.19232 1.20878 1.20682 1.45812 1.66042 1.14680 1.08212 1.20391 0.77033 0.87144 0.84678 1.90670 1.50672 1.16024 1.85468 1.20154 1.05777 0.95977 0.89538 1.19597 0.90673 1.02880 0.93882 1.20705 0.99777 0.99764 0.99743 1.20853 0.96920 1.04547 1.00060 1.21635 0.98478 0.96956 0.98430 1.41828 1.16944 1.33114 1.23314 0.75818 0.92782 0.92389 0.92230 0.91274 0.90601 0.92562 0.92423 0.92340 0.83441 0.94098 0.89920 0.77549 0.91926 0.75514 0.89419 0.85270 0.84842 0.85152 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.74 2.57 -67.93 -0.17 1.57 16 3 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.11 -1.04 4.54 -26.73 -0.12 -1.17 16 5 C 0.08 0.86 2.59 -67.71 -0.18 0.69 16 6 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 7 C -0.18 -1.71 9.16 37.16 0.34 -1.37 16 8 N -0.66 -8.77 3.47 -107.99 -0.37 -9.15 16 9 C 0.05 0.83 5.97 -4.97 -0.03 0.80 16 10 C 0.44 9.57 7.82 -10.98 -0.09 9.48 16 11 O -0.59 -13.96 15.78 5.55 0.09 -13.88 16 12 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 13 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 14 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 15 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 17 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 N -0.70 -9.04 3.81 -53.80 -0.20 -9.25 16 22 C 0.52 8.33 7.79 -10.98 -0.09 8.24 16 23 O -0.55 -10.63 15.70 5.56 0.09 -10.54 16 24 C -0.07 -1.15 6.24 -29.04 -0.18 -1.33 16 25 C 0.04 0.71 5.66 -81.79 -0.46 0.24 16 26 C -0.18 -3.26 10.77 -39.78 -0.43 -3.69 16 27 C -0.20 -3.24 10.86 -39.78 -0.43 -3.67 16 28 C -0.02 -0.34 11.94 -16.74 -0.20 -0.54 16 29 N -0.56 -7.75 6.07 -9.12 -0.06 -7.80 16 30 H 0.41 4.31 8.96 -40.82 -0.37 3.94 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 37 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.35 4.75 8.17 -39.29 -0.32 4.43 16 40 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 41 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 42 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.41 5.13 7.58 -40.82 -0.31 4.82 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.13 2.34 8.14 -51.93 -0.42 1.91 16 47 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 48 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 49 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 408.43 15.07 6.16 6.16 Total: -1.00 -32.14 408.43 -8.48 -40.61 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -7.89 Total: 24.87 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.92 Total: 0.36 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.03 Total: -63.48 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.17 Total: -24.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.14 -8.48 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146475368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.828 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds