Wall clock time and date at job start Tue Mar 31 2020 20:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 H 1.09003 * 109.47077 * 305.00103 * 5 4 2 7 7 C 1.53005 * 109.47060 * 185.00123 * 5 4 2 8 8 N 1.46899 * 109.47255 * 65.00136 * 5 4 2 9 9 C 1.46896 * 111.00020 * 204.99829 * 8 5 4 10 10 C 1.50707 * 109.46998 * 179.97438 * 9 8 5 11 11 O 1.21290 * 119.99933 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99989 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99567 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00346 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00002 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47306 * 119.99764 * 17 15 13 20 20 H 1.48507 * 109.47003 * 239.99384 * 17 15 13 21 21 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 22 22 C 1.34784 * 119.99635 * 274.99773 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.50697 * 109.47266 * 180.02562 * 24 22 21 26 26 C 1.34855 * 125.88617 * 274.69053 * 25 24 22 27 27 C 1.40894 * 107.41406 * 179.88631 * 26 25 24 28 28 C 1.34856 * 107.41697 * 0.37345 * 27 26 25 29 29 N 1.36340 * 125.89085 * 94.99736 * 25 24 22 30 30 H 0.96991 * 125.64032 * 359.95615 * 29 25 24 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 33 33 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 34 34 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 35 35 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 36 36 H 1.09004 * 109.46888 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.46752 * 299.99738 * 7 5 4 38 38 H 1.09000 * 109.47149 * 59.99823 * 7 5 4 39 39 H 1.00904 * 110.99968 * 81.04093 * 8 5 4 40 40 H 1.08992 * 109.47537 * 299.99575 * 9 8 5 41 41 H 1.08999 * 109.47184 * 60.00186 * 9 8 5 42 42 H 0.97003 * 120.00486 * 0.02562 * 12 10 9 43 43 H 0.96994 * 120.00317 * 180.02562 * 16 15 13 44 44 H 0.96995 * 120.00292 * 95.27206 * 21 2 1 45 45 H 1.09004 * 109.46932 * 300.00223 * 24 22 21 46 46 H 1.08997 * 109.47392 * 59.99562 * 24 22 21 47 47 H 1.07999 * 126.29391 * 0.02562 * 26 25 24 48 48 H 1.07998 * 126.28875 * 180.13191 * 27 26 25 49 49 H 1.07995 * 125.89221 * 179.73183 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1553 -1.3362 -0.1794 9 6 5.4833 -0.8025 0.1511 10 6 6.0559 -1.5668 1.3170 11 8 5.4203 -2.4677 1.8225 12 7 7.2746 -1.2498 1.7973 13 6 7.7957 -1.9453 2.8577 14 1 7.2294 -2.7470 3.3083 15 6 9.0520 -1.6182 3.3532 16 7 9.7408 -0.6425 2.8052 17 14 9.7615 -2.5655 4.7983 18 1 8.7948 -3.6066 5.2305 19 1 11.0351 -3.2109 4.3898 20 1 10.0188 -1.6316 5.9240 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8591 1.1585 2.4114 24 6 2.6500 -0.7286 3.5874 25 6 2.7000 0.2395 4.7412 26 6 3.7182 1.0760 5.0276 27 6 3.3561 1.8021 6.1795 28 6 2.1340 1.3756 6.5579 29 7 1.7262 0.4164 5.6789 30 1 0.8826 -0.0608 5.7146 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.7516 -1.7715 -1.2057 35 1 1.6054 -0.2617 -2.1370 36 1 5.1508 -1.1485 -2.6699 37 1 3.7722 -2.2741 -2.6700 38 1 3.6263 -0.6886 -3.4659 39 1 4.1997 -2.3269 -0.3657 40 1 6.1419 -0.9073 -0.7110 41 1 5.3959 0.2513 0.4156 42 1 7.7831 -0.5296 1.3929 43 1 10.6179 -0.4143 3.1509 44 1 2.2528 -1.6308 1.1515 45 1 1.9778 -1.5510 3.8324 46 1 3.6492 -1.1205 3.3978 47 1 4.6406 1.1734 4.4743 48 1 3.9500 2.5581 6.6715 49 1 1.5751 1.7318 7.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146475368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:49 Heat of formation + Delta-G solvation = -57.512947 kcal Electronic energy + Delta-G solvation = -30310.365956 eV Core-core repulsion = 26271.825457 eV Total energy + Delta-G solvation = -4038.540499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02199 -40.58174 -40.01846 -38.35599 -36.10312 -35.65726 -33.34111 -33.18793 -32.24275 -31.79829 -30.94797 -27.92410 -27.60108 -27.30516 -25.61882 -22.84687 -21.73917 -21.49264 -21.29760 -20.94896 -20.88316 -19.84971 -18.43710 -17.96279 -17.61081 -17.09588 -16.62558 -16.33730 -16.15354 -15.85916 -15.47625 -15.35178 -15.01999 -14.83202 -14.52701 -14.37134 -14.28680 -14.11657 -13.85241 -13.55200 -13.49305 -13.45800 -13.24071 -13.12629 -12.98938 -12.89983 -12.74664 -12.61039 -12.43179 -12.34448 -12.16296 -12.09767 -11.68800 -11.58042 -11.44731 -10.72749 -10.24623 -9.95188 -9.81947 -9.71077 -9.10788 -8.89039 -8.42506 -5.89626 1.34098 1.37444 1.42608 1.55870 1.85811 2.09755 2.11648 2.30814 2.45022 2.70546 3.00179 3.26273 3.61426 3.76010 3.89929 4.11643 4.19420 4.26982 4.30320 4.35882 4.44055 4.46183 4.49037 4.56377 4.58386 4.63423 4.66742 4.78972 4.82276 4.86984 4.90497 5.00296 5.05579 5.10613 5.29845 5.31920 5.36959 5.42943 5.44347 5.45890 5.86137 5.96724 6.08879 6.16407 6.22326 6.55349 6.64153 6.82857 6.90596 7.17736 7.54488 7.62741 8.15858 8.75543 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.004775 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.980425 B = 5862.967614 C = 8972.995835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.053 0.947 4 C -0.103 4.103 5 C 0.081 3.919 6 H 0.066 0.934 7 C -0.175 4.175 8 N -0.659 5.659 9 C 0.068 3.932 10 C 0.445 3.555 11 O -0.606 6.606 12 N -0.578 5.578 13 C -0.321 4.321 14 H 0.083 0.917 15 C -0.015 4.015 16 N -0.925 5.925 17 Si 0.987 3.013 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.277 1.277 21 N -0.681 5.681 22 C 0.520 3.480 23 O -0.588 6.588 24 C -0.067 4.067 25 C 0.032 3.968 26 C -0.219 4.219 27 C -0.230 4.230 28 C -0.002 4.002 29 N -0.544 5.544 30 H 0.425 0.575 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.347 0.653 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.391 0.609 43 H 0.274 0.726 44 H 0.412 0.588 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.140 0.860 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 0.006 -6.233 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.028 4.028 6 H 0.084 0.916 7 C -0.234 4.234 8 N -0.292 5.292 9 C -0.065 4.065 10 C 0.233 3.767 11 O -0.492 6.492 12 N -0.215 5.215 13 C -0.451 4.451 14 H 0.101 0.899 15 C -0.214 4.214 16 N -0.566 5.566 17 Si 0.811 3.189 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.203 1.203 21 N -0.332 5.332 22 C 0.306 3.694 23 O -0.469 6.469 24 C -0.108 4.108 25 C -0.081 4.081 26 C -0.244 4.244 27 C -0.254 4.254 28 C -0.133 4.133 29 N -0.141 5.141 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.167 0.833 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.224 0.776 43 H 0.084 0.916 44 H 0.250 0.750 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.158 0.842 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.020 0.579 -5.366 19.771 hybrid contribution 1.796 -0.604 -0.163 1.901 sum -17.225 -0.025 -5.529 18.090 Atomic orbital electron populations 1.22115 0.94708 1.02571 1.01879 1.20860 0.93784 0.96182 0.84833 0.92856 1.21880 0.93377 1.02084 0.96771 1.21696 0.95164 0.97813 0.88172 0.91589 1.22429 1.00868 1.01933 0.98188 1.60238 1.20342 1.08309 1.40297 1.21442 0.91458 0.98563 0.95063 1.20691 0.81998 0.86602 0.87451 1.90457 1.60858 1.34549 1.63288 1.41974 1.16165 1.33066 1.30313 1.19670 1.00701 1.15364 1.09348 0.89873 1.25977 0.96467 0.97682 1.01320 1.69686 1.13790 1.30068 1.43097 0.84951 0.78119 0.78088 0.77727 1.19417 1.19720 1.20261 1.45803 1.64741 1.14689 1.07981 1.20437 0.76812 0.86666 0.85478 1.90647 1.52701 1.17497 1.86056 1.20053 1.04646 0.96631 0.89451 1.19643 0.91045 1.02770 0.94687 1.20729 0.99790 1.02320 1.01534 1.21098 0.98681 1.05626 1.00017 1.22273 0.97437 0.95125 0.98441 1.41823 1.17041 1.32922 1.22291 0.73625 0.91216 0.94789 0.90141 0.89797 0.87804 0.93763 0.91622 0.90426 0.83343 0.92346 0.90205 0.77555 0.91615 0.75029 0.86340 0.88381 0.88062 0.84213 0.77941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.48 71.98 0.68 -2.10 16 2 C 0.15 3.18 2.57 45.00 0.12 3.29 16 3 H 0.05 1.46 7.58 -2.39 -0.02 1.45 16 4 C -0.10 -1.57 4.54 30.60 0.14 -1.43 16 5 C 0.08 1.57 2.59 44.92 0.12 1.69 16 6 H 0.07 1.46 7.80 -2.39 -0.02 1.44 16 7 C -0.18 -2.79 9.16 71.98 0.66 -2.13 16 8 N -0.66 -17.07 3.47 -495.58 -1.72 -18.79 16 9 C 0.07 2.22 5.97 85.56 0.51 2.73 16 10 C 0.45 19.88 7.82 87.66 0.69 20.56 16 11 O -0.61 -29.66 15.78 -3.06 -0.05 -29.71 16 12 N -0.58 -29.24 5.29 -306.98 -1.62 -30.86 16 13 C -0.32 -17.98 9.68 84.04 0.81 -17.16 16 14 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 15 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 16 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 17 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 N -0.68 -17.38 3.81 -442.53 -1.69 -19.06 16 22 C 0.52 16.94 7.79 87.66 0.68 17.63 16 23 O -0.59 -23.40 15.70 -3.03 -0.05 -23.44 16 24 C -0.07 -2.15 6.24 29.10 0.18 -1.97 16 25 C 0.03 1.11 5.66 41.08 0.23 1.34 16 26 C -0.22 -8.67 10.77 22.14 0.24 -8.43 16 27 C -0.23 -7.62 10.86 22.14 0.24 -7.38 16 28 C 0.00 -0.04 11.94 83.21 0.99 0.95 16 29 N -0.54 -14.49 6.07 -182.76 -1.11 -15.60 16 30 H 0.43 8.05 8.96 -92.71 -0.83 7.22 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 0.82 7.45 -2.38 -0.02 0.80 16 37 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.35 9.06 8.17 -89.69 -0.73 8.33 16 40 H 0.06 1.74 7.43 -2.39 -0.02 1.73 16 41 H 0.08 2.71 8.06 -2.39 -0.02 2.69 16 42 H 0.39 19.48 7.90 -92.71 -0.73 18.74 16 43 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.41 9.94 7.58 -92.71 -0.70 9.23 16 45 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 46 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 47 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 48 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 49 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -73.81 408.43 0.83 -72.99 By element: Atomic # 1 Polarization: 64.32 SS G_CDS: -2.01 Total: 62.32 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.76 Total: 7.23 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -5.86 Total: -135.04 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.10 Total: -53.16 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.81 0.83 -72.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146475368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds