Wall clock time and date at job start Tue Mar 31 2020 19:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47189 * 2 1 4 4 C 1.50697 * 109.46668 * 120.00200 * 2 1 3 5 5 O 1.21275 * 120.00214 * 120.00440 * 4 2 1 6 6 N 1.34777 * 119.99985 * 299.99308 * 4 2 1 7 7 C 1.46499 * 119.99990 * 180.27473 * 6 4 2 8 8 C 1.53001 * 109.47289 * 179.72752 * 7 6 4 9 9 H 1.09002 * 108.56825 * 62.05778 * 8 7 6 10 10 C 1.46915 * 108.62234 * 180.02562 * 8 7 6 11 11 N 1.50112 * 106.77921 * 177.92393 * 10 8 7 12 12 C 1.36936 * 120.64013 * 111.32384 * 11 10 8 13 13 H 1.07999 * 120.00419 * 155.65088 * 12 11 10 14 14 C 1.38810 * 119.99864 * 335.66293 * 12 11 10 15 15 N 1.31621 * 120.00154 * 340.73902 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 160.73889 * 14 12 11 17 17 H 1.48499 * 109.47121 * 59.99750 * 16 14 12 18 18 H 1.48498 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46910 * 299.99759 * 16 14 12 20 20 C 1.43427 * 118.72845 * 291.35013 * 11 10 8 21 21 C 1.55335 * 116.24012 * 89.35187 * 20 11 10 22 22 C 1.55184 * 108.87294 * 319.46420 * 21 20 11 23 23 O 1.39648 * 110.56958 * 322.14315 * 22 21 20 24 24 C 1.50696 * 109.47052 * 239.99839 * 2 1 3 25 25 C 1.35310 * 126.12819 * 274.69136 * 24 2 1 26 26 C 1.39872 * 107.92433 * 179.90511 * 25 24 2 27 27 N 1.30842 * 108.19893 * 0.36495 * 26 25 24 28 28 N 1.34948 * 126.12376 * 95.00302 * 24 2 1 29 29 C 1.46496 * 126.04129 * 359.93886 * 28 24 2 30 30 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47025 * 300.00384 * 1 2 3 32 32 H 1.09004 * 109.46787 * 60.00260 * 1 2 3 33 33 H 0.96998 * 120.00060 * 0.02562 * 6 4 2 34 34 H 1.08996 * 109.47750 * 299.73033 * 7 6 4 35 35 H 1.09002 * 109.46792 * 59.73608 * 7 6 4 36 36 H 1.09006 * 109.98868 * 297.23635 * 10 8 7 37 37 H 1.09002 * 109.98952 * 58.51176 * 10 8 7 38 38 H 0.97001 * 120.00350 * 180.02562 * 15 14 12 39 39 H 1.08993 * 108.12717 * 211.10870 * 20 11 10 40 40 H 1.09001 * 108.12694 * 327.59328 * 20 11 10 41 41 H 1.08995 * 109.56904 * 79.27895 * 21 20 11 42 42 H 1.08996 * 109.56634 * 199.64919 * 21 20 11 43 43 H 1.09000 * 109.26013 * 82.42412 * 22 21 20 44 44 H 1.08996 * 109.25898 * 201.86899 * 22 21 20 45 45 H 1.08001 * 126.04406 * 0.03446 * 25 24 2 46 46 H 1.07995 * 125.90792 * 180.14171 * 26 25 24 47 47 H 1.09002 * 109.46938 * 90.00111 * 29 28 24 48 48 H 1.08998 * 109.47548 * 209.99999 * 29 28 24 49 49 H 1.08998 * 109.47199 * 330.00190 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1999 -0.9371 3.6507 8 6 1.6945 -0.2126 4.9000 9 1 0.6053 -0.2535 4.9082 10 6 2.1998 -0.9158 6.0868 11 7 1.7242 -0.1438 7.2831 12 6 0.7844 -0.6731 8.1268 13 1 0.7265 -0.3351 9.1509 14 6 -0.0937 -1.6443 7.6657 15 7 -0.2931 -1.7910 6.3730 16 14 -0.9924 -2.7431 8.8800 17 1 -1.8238 -1.9071 9.7827 18 1 -1.8648 -3.6895 8.1394 19 1 -0.0033 -3.5060 9.6832 20 6 2.2727 1.1592 7.5253 21 6 1.5320 2.3508 6.8588 22 6 1.1072 1.9387 5.4242 23 8 2.0945 1.1520 4.8272 24 6 2.0324 -0.7104 -1.2304 25 6 2.2140 -2.0447 -1.3629 26 6 2.6885 -2.2882 -2.6560 27 7 2.7956 -1.1404 -3.2749 28 7 2.3872 -0.1292 -2.3955 29 6 2.3511 1.3055 -2.6891 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.1489 0.5386 2.5435 34 1 1.8371 -1.9648 3.6550 35 1 3.2899 -0.9366 3.6465 36 1 1.8024 -1.9304 6.1160 37 1 3.2893 -0.9430 6.0681 38 1 -0.9070 -2.4694 6.0509 39 1 2.2849 1.3271 8.6022 40 1 3.3050 1.1630 7.1754 41 1 0.6473 2.6036 7.4431 42 1 2.1976 3.2125 6.8091 43 1 0.1772 1.3724 5.4733 44 1 0.9504 2.8351 4.8243 45 1 2.0240 -2.7903 -0.6050 46 1 2.9288 -3.2560 -3.0707 47 1 3.3072 1.7554 -2.4212 48 1 2.1650 1.4542 -3.7528 49 1 1.5544 1.7746 -2.1119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149733443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:26 Heat of formation + Delta-G solvation = 31.512320 kcal Electronic energy + Delta-G solvation = -30311.222716 eV Core-core repulsion = 26276.542643 eV Total energy + Delta-G solvation = -4034.680074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.40597 -39.63368 -38.75938 -35.06820 -34.57134 -34.35760 -33.04278 -32.15614 -31.16779 -29.18340 -28.52706 -26.79860 -25.81873 -25.36388 -24.38474 -22.62312 -21.28127 -20.83597 -20.58805 -19.65997 -19.31183 -17.23881 -17.02317 -16.68717 -16.02978 -15.62190 -15.53517 -14.93457 -14.88723 -14.55665 -14.49216 -14.13789 -13.92014 -13.73185 -13.38258 -13.18723 -13.06562 -12.95824 -12.67660 -12.49790 -12.42113 -12.35461 -12.10589 -11.89373 -11.47776 -11.43060 -11.24451 -10.87298 -10.78087 -10.63094 -10.52646 -10.20980 -10.00094 -9.73686 -9.60825 -9.53121 -9.28033 -8.85150 -8.71036 -8.53801 -8.40939 -6.85869 -5.95789 -3.34362 1.81433 2.41065 2.79449 2.92604 3.31664 3.38489 3.40406 3.45019 4.24548 4.40560 4.44689 4.62018 4.70237 4.86163 4.95878 5.00654 5.10961 5.19694 5.20074 5.24874 5.40531 5.48062 5.67317 5.72233 5.77179 5.86382 5.88299 5.90890 5.96194 6.09823 6.28170 6.31033 6.37652 6.43840 6.52236 6.62413 6.65967 6.73418 6.77697 6.88155 6.91863 6.97495 7.07841 7.28952 7.68419 7.69973 7.75359 8.07956 8.28727 8.42840 9.03634 9.71668 10.25866 11.13329 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002806 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.377786 B = 9975.882917 C =10838.987382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.530 6.530 6 N -0.709 5.709 7 C 0.122 3.878 8 C 0.061 3.939 9 H 0.107 0.893 10 C 0.143 3.857 11 N -0.587 5.587 12 C -0.250 4.250 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.908 5.908 16 Si 0.904 3.096 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.161 3.839 21 C -0.172 4.172 22 C 0.067 3.933 23 O -0.370 6.370 24 C 0.089 3.911 25 C -0.226 4.226 26 C 0.039 3.961 27 N -0.301 5.301 28 N -0.377 5.377 29 C 0.099 3.901 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.019 0.981 38 H 0.256 0.744 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.155 0.845 46 H 0.182 0.818 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 6.900 -13.834 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 H 0.121 0.879 4 C 0.301 3.699 5 O -0.407 6.407 6 N -0.360 5.360 7 C -0.002 4.002 8 C 0.002 3.998 9 H 0.125 0.875 10 C 0.018 3.982 11 N -0.308 5.308 12 C -0.379 4.379 13 H 0.086 0.914 14 C -0.195 4.195 15 N -0.553 5.553 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.032 3.968 21 C -0.213 4.213 22 C -0.011 4.011 23 O -0.289 6.289 24 C -0.038 4.038 25 C -0.255 4.255 26 C -0.146 4.146 27 N -0.123 5.123 28 N -0.160 5.160 29 C -0.042 4.042 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.173 0.827 46 H 0.198 0.802 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.934 6.837 -15.148 16.731 hybrid contribution -1.220 -0.442 1.509 1.990 sum 0.714 6.395 -13.639 15.080 Atomic orbital electron populations 1.21778 0.91122 1.03906 1.02923 1.19782 0.97939 0.99714 0.89580 0.87907 1.19945 0.80784 0.84892 0.84271 1.90714 1.37666 1.25998 1.86323 1.45837 1.52906 1.31943 1.05306 1.21727 0.98994 0.96569 0.82913 1.22211 1.02561 0.81461 0.93534 0.87522 1.20741 0.94267 0.98267 0.84916 1.44097 1.46388 1.11565 1.28720 1.19221 1.08381 1.18663 0.91651 0.91356 1.24890 0.97272 1.01497 0.95816 1.69846 1.38195 1.35424 1.11836 0.86335 0.79123 0.80612 0.80500 1.21056 1.21605 1.21072 1.20369 0.94788 0.84896 0.96778 1.23577 1.00740 0.99738 0.97267 1.22346 0.91776 0.94118 0.92820 1.87510 1.45517 1.17679 1.78194 1.20296 1.01794 0.93632 0.88058 1.21453 1.11012 0.95116 0.97932 1.23869 0.99888 0.96942 0.93950 1.77304 1.22742 0.95818 1.16434 1.48378 1.51596 1.06670 1.09393 1.21812 1.03050 0.75747 1.03630 0.91085 0.90838 0.91645 0.76588 0.90235 0.92013 0.87786 0.96278 0.93392 0.94907 0.95045 0.92491 0.93204 0.91870 0.93145 0.82702 0.80151 0.90917 0.89348 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.07 37.16 0.34 -0.93 16 2 C -0.05 -0.52 2.74 -92.92 -0.25 -0.77 16 3 H 0.10 0.91 7.50 -51.93 -0.39 0.52 16 4 C 0.52 7.60 7.08 -10.99 -0.08 7.52 16 5 O -0.53 -9.65 13.72 5.56 0.08 -9.57 16 6 N -0.71 -10.34 5.29 -60.30 -0.32 -10.66 16 7 C 0.12 2.13 5.27 -4.04 -0.02 2.10 16 8 C 0.06 1.17 2.01 -29.64 -0.06 1.11 16 9 H 0.11 2.31 5.24 -51.93 -0.27 2.04 16 10 C 0.14 3.13 4.71 -4.94 -0.02 3.11 16 11 N -0.59 -13.70 2.61 -174.50 -0.46 -14.15 16 12 C -0.25 -6.36 9.62 -15.06 -0.14 -6.50 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 15 N -0.91 -22.97 9.57 55.49 0.53 -22.43 16 16 Si 0.90 20.47 29.60 -169.99 -5.03 15.44 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.16 3.30 5.32 -4.43 -0.02 3.27 16 21 C -0.17 -3.08 6.75 -24.34 -0.16 -3.24 16 22 C 0.07 1.18 6.38 38.31 0.24 1.43 16 23 O -0.37 -6.82 9.34 -31.96 -0.30 -7.12 16 24 C 0.09 1.16 5.74 -82.27 -0.47 0.69 16 25 C -0.23 -3.22 9.14 -40.01 -0.37 -3.58 16 26 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 27 N -0.30 -4.20 12.58 30.62 0.39 -3.82 16 28 N -0.38 -4.63 4.01 -63.89 -0.26 -4.89 16 29 C 0.10 0.76 11.06 59.84 0.66 1.42 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 5.11 7.61 -40.82 -0.31 4.80 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 39 H 0.03 0.67 7.96 -51.93 -0.41 0.25 16 40 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.25 6.66 -51.93 -0.35 0.91 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.16 2.34 6.78 -52.49 -0.36 1.98 16 46 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.45 7.55 -51.93 -0.39 0.06 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -30.27 386.39 -8.00 -38.27 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.80 Total: 7.19 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.66 Total: 5.91 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.12 Total: -55.95 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.22 Total: -16.70 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.27 -8.00 -38.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149733443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.787 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds