Wall clock time and date at job start Tue Mar 31 2020 19:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47189 * 2 1 4 4 C 1.50697 * 109.46668 * 120.00200 * 2 1 3 5 5 O 1.21275 * 120.00214 * 120.00440 * 4 2 1 6 6 N 1.34777 * 119.99985 * 299.99308 * 4 2 1 7 7 C 1.46499 * 119.99990 * 180.27473 * 6 4 2 8 8 C 1.53001 * 109.47289 * 179.72752 * 7 6 4 9 9 H 1.09002 * 108.56825 * 62.05778 * 8 7 6 10 10 C 1.46915 * 108.62234 * 180.02562 * 8 7 6 11 11 N 1.50112 * 106.77921 * 177.92393 * 10 8 7 12 12 C 1.36936 * 120.64013 * 111.32384 * 11 10 8 13 13 H 1.07999 * 120.00419 * 155.65088 * 12 11 10 14 14 C 1.38810 * 119.99864 * 335.66293 * 12 11 10 15 15 N 1.31621 * 120.00154 * 340.73902 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 160.73889 * 14 12 11 17 17 H 1.48499 * 109.47121 * 59.99750 * 16 14 12 18 18 H 1.48498 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46910 * 299.99759 * 16 14 12 20 20 C 1.43427 * 118.72845 * 291.35013 * 11 10 8 21 21 C 1.55335 * 116.24012 * 89.35187 * 20 11 10 22 22 C 1.55184 * 108.87294 * 319.46420 * 21 20 11 23 23 O 1.39648 * 110.56958 * 322.14315 * 22 21 20 24 24 C 1.50696 * 109.47052 * 239.99839 * 2 1 3 25 25 C 1.35310 * 126.12819 * 274.69136 * 24 2 1 26 26 C 1.39872 * 107.92433 * 179.90511 * 25 24 2 27 27 N 1.30842 * 108.19893 * 0.36495 * 26 25 24 28 28 N 1.34948 * 126.12376 * 95.00302 * 24 2 1 29 29 C 1.46496 * 126.04129 * 359.93886 * 28 24 2 30 30 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47025 * 300.00384 * 1 2 3 32 32 H 1.09004 * 109.46787 * 60.00260 * 1 2 3 33 33 H 0.96998 * 120.00060 * 0.02562 * 6 4 2 34 34 H 1.08996 * 109.47750 * 299.73033 * 7 6 4 35 35 H 1.09002 * 109.46792 * 59.73608 * 7 6 4 36 36 H 1.09006 * 109.98868 * 297.23635 * 10 8 7 37 37 H 1.09002 * 109.98952 * 58.51176 * 10 8 7 38 38 H 0.97001 * 120.00350 * 180.02562 * 15 14 12 39 39 H 1.08993 * 108.12717 * 211.10870 * 20 11 10 40 40 H 1.09001 * 108.12694 * 327.59328 * 20 11 10 41 41 H 1.08995 * 109.56904 * 79.27895 * 21 20 11 42 42 H 1.08996 * 109.56634 * 199.64919 * 21 20 11 43 43 H 1.09000 * 109.26013 * 82.42412 * 22 21 20 44 44 H 1.08996 * 109.25898 * 201.86899 * 22 21 20 45 45 H 1.08001 * 126.04406 * 0.03446 * 25 24 2 46 46 H 1.07995 * 125.90792 * 180.14171 * 26 25 24 47 47 H 1.09002 * 109.46938 * 90.00111 * 29 28 24 48 48 H 1.08998 * 109.47548 * 209.99999 * 29 28 24 49 49 H 1.08998 * 109.47199 * 330.00190 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1999 -0.9371 3.6507 8 6 1.6945 -0.2126 4.9000 9 1 0.6053 -0.2535 4.9082 10 6 2.1998 -0.9158 6.0868 11 7 1.7242 -0.1438 7.2831 12 6 0.7844 -0.6731 8.1268 13 1 0.7265 -0.3351 9.1509 14 6 -0.0937 -1.6443 7.6657 15 7 -0.2931 -1.7910 6.3730 16 14 -0.9924 -2.7431 8.8800 17 1 -1.8238 -1.9071 9.7827 18 1 -1.8648 -3.6895 8.1394 19 1 -0.0033 -3.5060 9.6832 20 6 2.2727 1.1592 7.5253 21 6 1.5320 2.3508 6.8588 22 6 1.1072 1.9387 5.4242 23 8 2.0945 1.1520 4.8272 24 6 2.0324 -0.7104 -1.2304 25 6 2.2140 -2.0447 -1.3629 26 6 2.6885 -2.2882 -2.6560 27 7 2.7956 -1.1404 -3.2749 28 7 2.3872 -0.1292 -2.3955 29 6 2.3511 1.3055 -2.6891 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.1489 0.5386 2.5435 34 1 1.8371 -1.9648 3.6550 35 1 3.2899 -0.9366 3.6465 36 1 1.8024 -1.9304 6.1160 37 1 3.2893 -0.9430 6.0681 38 1 -0.9070 -2.4694 6.0509 39 1 2.2849 1.3271 8.6022 40 1 3.3050 1.1630 7.1754 41 1 0.6473 2.6036 7.4431 42 1 2.1976 3.2125 6.8091 43 1 0.1772 1.3724 5.4733 44 1 0.9504 2.8351 4.8243 45 1 2.0240 -2.7903 -0.6050 46 1 2.9288 -3.2560 -3.0707 47 1 3.3072 1.7554 -2.4212 48 1 2.1650 1.4542 -3.7528 49 1 1.5544 1.7746 -2.1119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149733443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:25 Heat of formation + Delta-G solvation = 12.020706 kcal Electronic energy + Delta-G solvation = -30312.067936 eV Core-core repulsion = 26276.542643 eV Total energy + Delta-G solvation = -4035.525294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.37660 -40.98051 -40.15015 -36.78185 -35.94588 -35.32141 -33.92230 -33.73411 -32.84675 -30.42664 -29.83134 -27.55044 -27.26241 -27.04359 -25.48232 -24.16990 -22.40766 -22.26151 -21.69621 -21.27694 -20.37325 -18.92748 -18.02027 -17.91569 -17.59573 -16.92715 -16.55764 -16.45638 -16.17234 -16.01533 -15.65431 -15.51820 -15.32940 -14.79807 -14.67651 -14.44678 -14.28089 -14.10761 -13.92305 -13.66196 -13.50752 -13.27029 -13.20353 -13.16614 -13.05400 -12.86634 -12.58460 -12.50078 -12.29735 -12.29552 -11.91040 -11.75664 -11.62068 -11.35085 -11.16136 -10.80488 -10.53635 -10.25998 -10.19716 -10.01491 -9.39576 -8.69792 -7.88037 -5.28288 0.84964 1.49169 1.53441 1.55589 1.57910 1.66014 1.90534 2.30803 2.53801 3.14443 3.29343 3.32897 3.52875 3.68639 3.80041 4.04794 4.09607 4.20161 4.30389 4.37531 4.40282 4.43408 4.44937 4.59257 4.67448 4.70129 4.73758 4.76792 4.82315 4.82872 4.85541 4.89189 5.00091 5.10444 5.19911 5.21145 5.21737 5.31853 5.37049 5.42721 5.47106 5.54250 5.69978 5.75827 6.10017 6.38175 6.54608 6.60300 6.73273 7.12806 7.27329 7.84983 8.37722 9.17660 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002806 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.377786 B = 9975.882917 C =10838.987382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 H 0.136 0.864 4 C 0.515 3.485 5 O -0.570 6.570 6 N -0.701 5.701 7 C 0.135 3.865 8 C 0.081 3.919 9 H 0.087 0.913 10 C 0.144 3.856 11 N -0.602 5.602 12 C -0.265 4.265 13 H 0.062 0.938 14 C -0.034 4.034 15 N -0.915 5.915 16 Si 0.957 3.043 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.287 1.287 20 C 0.154 3.846 21 C -0.165 4.165 22 C 0.068 3.932 23 O -0.366 6.366 24 C 0.088 3.912 25 C -0.257 4.257 26 C 0.033 3.967 27 N -0.325 5.325 28 N -0.374 5.374 29 C 0.085 3.915 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.251 0.749 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.090 0.910 45 H 0.137 0.863 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 9.403 -14.772 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.449 6.449 6 N -0.352 5.352 7 C 0.010 3.990 8 C 0.022 3.978 9 H 0.104 0.896 10 C 0.019 3.981 11 N -0.323 5.323 12 C -0.395 4.395 13 H 0.079 0.921 14 C -0.230 4.230 15 N -0.560 5.560 16 Si 0.786 3.214 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.214 1.214 20 C 0.026 3.974 21 C -0.206 4.206 22 C -0.010 4.010 23 O -0.285 6.285 24 C -0.040 4.040 25 C -0.286 4.286 26 C -0.151 4.151 27 N -0.148 5.148 28 N -0.158 5.158 29 C -0.054 4.054 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.154 0.846 46 H 0.219 0.781 47 H 0.101 0.899 48 H 0.117 0.883 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.490 9.395 -16.100 18.700 hybrid contribution -1.029 -1.181 1.845 2.420 sum 0.461 8.214 -14.255 16.459 Atomic orbital electron populations 1.21796 0.89286 1.03420 1.04823 1.19800 0.99157 1.00346 0.86516 0.84595 1.20600 0.79878 0.84403 0.85054 1.90711 1.39444 1.27824 1.86899 1.45675 1.52917 1.32090 1.04530 1.21344 0.98391 0.95720 0.83553 1.21734 1.00929 0.81998 0.93110 0.89572 1.20669 0.94174 0.97343 0.85913 1.44208 1.46223 1.12899 1.28979 1.19345 1.08893 1.19385 0.91843 0.92075 1.25430 0.98144 1.02356 0.97089 1.69966 1.38253 1.35254 1.12531 0.85519 0.77976 0.79044 0.78850 1.20730 1.21961 1.21419 1.20488 0.95131 0.84830 0.96989 1.23493 1.00817 0.99230 0.97081 1.22411 0.90284 0.94916 0.93356 1.87510 1.45852 1.16972 1.78136 1.20519 1.01082 0.93509 0.88887 1.21471 1.13019 0.95824 0.98281 1.24231 0.99434 0.97880 0.93568 1.77245 1.23659 0.96419 1.17437 1.48717 1.50402 1.07969 1.08710 1.22249 1.04816 0.73296 1.05064 0.92843 0.89399 0.89244 0.75183 0.92037 0.92673 0.90422 0.96027 0.93920 0.95307 0.94821 0.92823 0.90371 0.94410 0.89191 0.84560 0.78052 0.89893 0.88323 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.07 71.99 0.65 -1.44 16 2 C -0.04 -0.70 2.74 -12.29 -0.03 -0.73 16 3 H 0.14 1.83 7.50 -2.39 -0.02 1.81 16 4 C 0.51 14.68 7.08 87.66 0.62 15.30 16 5 O -0.57 -21.08 13.72 -3.01 -0.04 -21.12 16 6 N -0.70 -19.65 5.29 -463.07 -2.45 -22.10 16 7 C 0.14 4.74 5.27 86.38 0.45 5.19 16 8 C 0.08 3.12 2.01 28.71 0.06 3.18 16 9 H 0.09 3.75 5.24 -2.39 -0.01 3.74 16 10 C 0.14 6.40 4.71 83.79 0.39 6.79 16 11 N -0.60 -28.20 2.61 -706.00 -1.84 -30.04 16 12 C -0.26 -13.60 9.62 84.03 0.81 -12.80 16 13 H 0.06 3.16 7.88 -2.91 -0.02 3.13 16 14 C -0.03 -1.71 4.92 84.86 0.42 -1.29 16 15 N -0.91 -46.99 9.57 21.65 0.21 -46.78 16 16 Si 0.96 42.43 29.60 68.60 2.03 44.46 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 C 0.15 6.17 5.32 87.75 0.47 6.63 16 21 C -0.17 -5.54 6.75 32.15 0.22 -5.32 16 22 C 0.07 2.22 6.38 72.73 0.46 2.68 16 23 O -0.37 -12.79 9.34 -137.27 -1.28 -14.07 16 24 C 0.09 2.19 5.74 41.40 0.24 2.42 16 25 C -0.26 -7.40 9.14 21.99 0.20 -7.20 16 26 C 0.03 0.86 12.03 85.24 1.03 1.89 16 27 N -0.33 -8.79 12.58 -57.02 -0.72 -9.50 16 28 N -0.37 -8.48 4.01 -356.05 -1.43 -9.91 16 29 C 0.09 1.03 11.06 127.77 1.41 2.44 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.13 7.56 -2.39 -0.02 1.11 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.41 9.58 7.61 -92.71 -0.71 8.88 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 3.88 6.03 -2.38 -0.01 3.86 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 39 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 40 H 0.03 1.31 7.99 -2.39 -0.02 1.29 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.14 4.37 6.78 -2.91 -0.02 4.35 16 46 H 0.20 3.95 8.06 -2.91 -0.02 3.92 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.11 0.69 7.55 -2.39 -0.02 0.67 16 Total: -1.00 -66.76 386.39 2.12 -64.64 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.25 Total: 26.67 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 7.40 Total: 17.76 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -6.23 Total: -118.33 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.32 Total: -35.19 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -66.76 2.12 -64.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149733443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.659 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds