Wall clock time and date at job start Tue Mar 31 2020 19:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.50705 * 109.46652 * 239.99701 * 2 1 3 5 5 O 1.21278 * 119.99728 * 239.99438 * 4 2 1 6 6 N 1.34776 * 119.99686 * 60.00700 * 4 2 1 7 7 C 1.46507 * 119.99571 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46781 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.34324 * 305.20007 * 8 7 6 10 10 C 1.54302 * 109.40355 * 185.39675 * 8 7 6 11 11 N 1.48204 * 110.71515 * 200.48072 * 10 8 7 12 12 C 1.36935 * 118.53670 * 138.79756 * 11 10 8 13 13 H 1.08007 * 119.99875 * 206.10640 * 12 11 10 14 14 C 1.38810 * 120.00211 * 26.09417 * 12 11 10 15 15 N 1.31621 * 119.99451 * 15.49326 * 14 12 11 16 16 Si 1.86799 * 120.00150 * 195.49369 * 14 12 11 17 17 H 1.48497 * 109.47238 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47197 * 120.00391 * 16 14 12 19 19 H 1.48502 * 109.47000 * 239.99880 * 16 14 12 20 20 C 1.44466 * 122.95179 * 318.82077 * 11 10 8 21 21 C 1.54869 * 109.35142 * 88.89979 * 20 11 10 22 22 C 1.47683 * 109.68114 * 290.08928 * 21 20 11 23 23 O 1.40531 * 109.40736 * 64.99906 * 8 7 6 24 24 C 1.50703 * 109.47111 * 120.00216 * 2 1 3 25 25 C 1.35312 * 126.12727 * 84.68315 * 24 2 1 26 26 C 1.39869 * 107.91637 * 179.90215 * 25 24 2 27 27 N 1.30831 * 108.20820 * 0.37177 * 26 25 24 28 28 N 1.34949 * 126.12162 * 265.00095 * 24 2 1 29 29 C 1.46493 * 126.03809 * 359.93683 * 28 24 2 30 30 H 1.08999 * 109.47345 * 59.99797 * 1 2 3 31 31 H 1.09006 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46956 * 300.00137 * 1 2 3 33 33 H 0.96994 * 120.00561 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.47392 * 59.99546 * 7 6 4 35 35 H 1.09000 * 109.46471 * 299.99369 * 7 6 4 36 36 H 1.09003 * 109.22868 * 320.80725 * 10 8 7 37 37 H 1.09000 * 109.22889 * 80.17918 * 10 8 7 38 38 H 0.97005 * 119.99803 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.49442 * 328.93154 * 20 11 10 40 40 H 1.08999 * 109.49752 * 208.87269 * 20 11 10 41 41 H 1.09003 * 109.43504 * 50.15132 * 21 20 11 42 42 H 1.09000 * 109.43750 * 170.02425 * 21 20 11 43 43 H 1.09008 * 108.64627 * 181.88237 * 22 21 20 44 44 H 1.09002 * 108.64518 * 299.71969 * 22 21 20 45 45 H 1.07996 * 126.04281 * 0.04151 * 25 24 2 46 46 H 1.08004 * 125.89646 * 180.14466 * 26 25 24 47 47 H 1.09003 * 109.47091 * 90.00798 * 29 28 24 48 48 H 1.09011 * 109.47253 * 210.00264 * 29 28 24 49 49 H 1.08992 * 109.47441 * 330.00274 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 6 1.6848 -0.2195 -4.9000 9 1 0.5988 -0.1400 -4.8524 10 6 2.0856 -1.0226 -6.1551 11 7 2.0591 -0.1600 -7.3599 12 6 3.0645 -0.2909 -8.2804 13 1 3.3282 0.5428 -8.9143 14 6 3.7448 -1.4951 -8.3987 15 7 3.2446 -2.5887 -7.8636 16 14 5.3699 -1.5635 -9.3172 17 1 5.7118 -0.2086 -9.8198 18 1 6.4379 -2.0345 -8.3992 19 1 5.2522 -2.5017 -10.4623 20 6 1.0205 0.8133 -7.6069 21 6 1.4194 2.1641 -6.9630 22 6 1.3606 2.0504 -5.4917 23 8 2.2451 1.0680 -4.9579 24 6 2.0324 -0.7105 1.2305 25 6 2.2028 -2.0459 1.3669 26 6 2.6860 -2.2884 2.6569 27 7 2.7940 -1.1406 3.2755 28 7 2.3871 -0.1293 2.3956 29 6 2.3533 1.3057 2.6883 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5436 34 1 1.8325 -1.9681 -3.6509 35 1 3.2854 -0.9399 -3.6506 36 1 3.0914 -1.4207 -6.0205 37 1 1.3881 -1.8492 -6.2903 38 1 3.7198 -3.4303 -7.9466 39 1 0.0843 0.4648 -7.1707 40 1 0.8941 0.9457 -8.6814 41 1 2.4334 2.4251 -7.2664 42 1 0.7309 2.9413 -7.2945 43 1 1.6114 3.0181 -5.0571 44 1 0.3411 1.7953 -5.2024 45 1 2.0034 -2.7923 0.6123 46 1 2.9249 -3.2564 3.0720 47 1 1.3795 1.5696 3.1009 48 1 3.1320 1.5475 3.4118 49 1 2.5233 1.8680 1.7701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149733444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:31 Heat of formation + Delta-G solvation = 28.050095 kcal Electronic energy + Delta-G solvation = -29936.361430 eV Core-core repulsion = 25901.531223 eV Total energy + Delta-G solvation = -4034.830207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49035 -39.70125 -38.73443 -35.21434 -34.67644 -34.47053 -33.13604 -32.53828 -31.08923 -29.32348 -28.59597 -26.86309 -25.87126 -25.37754 -24.51107 -22.66735 -21.35602 -21.02076 -20.71201 -19.88567 -19.31238 -17.26182 -17.11714 -16.69142 -16.29179 -15.78874 -15.67010 -15.23255 -14.97574 -14.81795 -14.48762 -14.10265 -13.84548 -13.68526 -13.55618 -13.33968 -13.08836 -12.89632 -12.65784 -12.59795 -12.46794 -12.45425 -12.38465 -12.11147 -11.80173 -11.56738 -11.17075 -10.89646 -10.75797 -10.70396 -10.59605 -10.23448 -10.04827 -9.94891 -9.77818 -9.65644 -9.36037 -8.93948 -8.88230 -8.48099 -8.42338 -6.71701 -5.79481 -3.22295 1.74260 2.33295 2.64599 2.84746 3.25110 3.38814 3.47021 3.48474 4.12639 4.22952 4.38561 4.49638 4.52368 4.72942 4.80507 4.92714 5.04607 5.10331 5.14607 5.25883 5.32028 5.35614 5.42570 5.49483 5.58205 5.65133 5.70764 5.75237 5.79135 5.86122 5.97860 6.07397 6.19429 6.22411 6.28183 6.34256 6.43619 6.58713 6.66676 6.73480 6.89745 6.93949 7.14973 7.53481 7.55944 7.63391 7.80989 7.92511 8.25906 8.44853 9.20342 9.86933 10.30717 11.28553 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002654 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.986297 B =10548.314421 C =11548.928507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.523 6.523 6 N -0.718 5.718 7 C 0.125 3.875 8 C 0.056 3.944 9 H 0.047 0.953 10 C 0.166 3.834 11 N -0.586 5.586 12 C -0.254 4.254 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.905 5.905 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.291 1.291 20 C 0.157 3.843 21 C -0.184 4.184 22 C 0.079 3.921 23 O -0.360 6.360 24 C 0.087 3.913 25 C -0.226 4.226 26 C 0.040 3.960 27 N -0.300 5.300 28 N -0.376 5.376 29 C 0.100 3.900 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.254 0.746 39 H 0.028 0.972 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.155 0.845 46 H 0.182 0.818 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 8.821 17.358 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 H 0.122 0.878 4 C 0.301 3.699 5 O -0.398 6.398 6 N -0.369 5.369 7 C 0.002 3.998 8 C -0.004 4.004 9 H 0.065 0.935 10 C 0.040 3.960 11 N -0.307 5.307 12 C -0.384 4.384 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.550 5.550 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.218 1.218 20 C 0.029 3.971 21 C -0.225 4.225 22 C 0.002 3.998 23 O -0.278 6.278 24 C -0.040 4.040 25 C -0.255 4.255 26 C -0.145 4.145 27 N -0.121 5.121 28 N -0.160 5.160 29 C -0.042 4.042 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.172 0.828 46 H 0.199 0.801 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.648 8.686 18.605 21.911 hybrid contribution 0.249 0.003 -1.396 1.418 sum -7.399 8.689 17.209 20.649 Atomic orbital electron populations 1.21766 0.91150 1.03804 1.02903 1.19785 0.97897 0.99751 0.89536 0.87822 1.19985 0.80764 0.84951 0.84183 1.90751 1.37022 1.25822 1.86225 1.45922 1.53481 1.31978 1.05526 1.21606 1.00694 0.95824 0.81691 1.23177 0.95823 0.85259 0.96170 0.93479 1.21630 1.02598 0.90137 0.81648 1.43588 1.25375 1.41972 1.19727 1.19206 1.09975 0.95310 1.13930 0.91741 1.25003 0.99780 0.95002 0.99600 1.70030 1.37788 0.98328 1.48855 0.86242 0.84085 0.77475 0.79062 1.20351 1.21497 1.21775 1.20665 0.90419 0.88066 0.97972 1.22300 1.02589 1.00946 0.96626 1.21292 0.92104 0.91486 0.94882 1.87442 1.41267 1.16775 1.82358 1.20264 1.02013 0.93615 0.88084 1.21434 1.11027 0.94994 0.98062 1.23877 0.99720 0.96996 0.93947 1.77321 1.22655 0.95833 1.16335 1.48383 1.51584 1.06704 1.09305 1.21813 1.03606 0.75700 1.03087 0.91059 0.91111 0.91495 0.76855 0.89981 0.90398 0.89785 0.94497 0.93621 0.95380 0.93133 0.91129 0.92374 0.91614 0.94800 0.82757 0.80079 0.90851 0.89313 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.07 37.16 0.34 -0.66 16 2 C -0.05 -0.45 2.92 -92.92 -0.27 -0.72 16 3 H 0.10 0.78 6.95 -51.93 -0.36 0.42 16 4 C 0.52 6.87 7.08 -10.98 -0.08 6.79 16 5 O -0.52 -9.05 13.76 5.56 0.08 -8.97 16 6 N -0.72 -9.03 5.39 -60.29 -0.32 -9.35 16 7 C 0.13 2.01 5.24 -4.04 -0.02 1.99 16 8 C 0.06 0.97 2.35 -26.05 -0.06 0.91 16 9 H 0.05 0.73 7.21 -51.93 -0.37 0.36 16 10 C 0.17 3.76 4.50 -2.42 -0.01 3.75 16 11 N -0.59 -14.05 2.59 -171.46 -0.44 -14.49 16 12 C -0.25 -6.84 9.43 -15.06 -0.14 -6.98 16 13 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 14 C 0.00 0.12 4.88 -17.43 -0.09 0.04 16 15 N -0.91 -25.70 10.98 55.49 0.61 -25.09 16 16 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C 0.16 3.10 5.68 -4.14 -0.02 3.07 16 21 C -0.18 -3.04 6.03 -28.32 -0.17 -3.21 16 22 C 0.08 1.18 6.04 34.59 0.21 1.39 16 23 O -0.36 -6.43 9.78 -34.11 -0.33 -6.76 16 24 C 0.09 1.05 5.72 -82.26 -0.47 0.58 16 25 C -0.23 -3.02 9.14 -40.01 -0.37 -3.39 16 26 C 0.04 0.50 12.02 -17.37 -0.21 0.29 16 27 N -0.30 -4.01 12.58 30.62 0.39 -3.63 16 28 N -0.38 -4.35 4.01 -63.89 -0.26 -4.60 16 29 C 0.10 0.69 11.27 59.84 0.67 1.37 16 30 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 3.97 7.88 -40.82 -0.32 3.65 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 2.18 6.24 -51.93 -0.32 1.86 16 37 H 0.04 0.89 8.02 -51.93 -0.42 0.48 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.05 1.01 7.97 -51.93 -0.41 0.60 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.03 0.44 7.28 -51.93 -0.38 0.06 16 45 H 0.15 2.17 6.83 -52.49 -0.36 1.81 16 46 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 49 H 0.08 0.43 6.97 -51.93 -0.36 0.07 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -34.03 389.88 -8.03 -42.06 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.90 Total: 2.99 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.69 Total: 5.20 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.03 Total: -57.16 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.26 Total: -15.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.03 -8.03 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149733444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.113 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds