Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.50705 * 109.46652 * 239.99701 * 2 1 3 5 5 O 1.21278 * 119.99728 * 239.99438 * 4 2 1 6 6 N 1.34776 * 119.99686 * 60.00700 * 4 2 1 7 7 C 1.46507 * 119.99571 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46781 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.34324 * 305.20007 * 8 7 6 10 10 C 1.54302 * 109.40355 * 185.39675 * 8 7 6 11 11 N 1.48204 * 110.71515 * 200.48072 * 10 8 7 12 12 C 1.36935 * 118.53670 * 138.79756 * 11 10 8 13 13 H 1.08007 * 119.99875 * 206.10640 * 12 11 10 14 14 C 1.38810 * 120.00211 * 26.09417 * 12 11 10 15 15 N 1.31621 * 119.99451 * 15.49326 * 14 12 11 16 16 Si 1.86799 * 120.00150 * 195.49369 * 14 12 11 17 17 H 1.48497 * 109.47238 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47197 * 120.00391 * 16 14 12 19 19 H 1.48502 * 109.47000 * 239.99880 * 16 14 12 20 20 C 1.44466 * 122.95179 * 318.82077 * 11 10 8 21 21 C 1.54869 * 109.35142 * 88.89979 * 20 11 10 22 22 C 1.47683 * 109.68114 * 290.08928 * 21 20 11 23 23 O 1.40531 * 109.40736 * 64.99906 * 8 7 6 24 24 C 1.50703 * 109.47111 * 120.00216 * 2 1 3 25 25 C 1.35312 * 126.12727 * 84.68315 * 24 2 1 26 26 C 1.39869 * 107.91637 * 179.90215 * 25 24 2 27 27 N 1.30831 * 108.20820 * 0.37177 * 26 25 24 28 28 N 1.34949 * 126.12162 * 265.00095 * 24 2 1 29 29 C 1.46493 * 126.03809 * 359.93683 * 28 24 2 30 30 H 1.08999 * 109.47345 * 59.99797 * 1 2 3 31 31 H 1.09006 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46956 * 300.00137 * 1 2 3 33 33 H 0.96994 * 120.00561 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.47392 * 59.99546 * 7 6 4 35 35 H 1.09000 * 109.46471 * 299.99369 * 7 6 4 36 36 H 1.09003 * 109.22868 * 320.80725 * 10 8 7 37 37 H 1.09000 * 109.22889 * 80.17918 * 10 8 7 38 38 H 0.97005 * 119.99803 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.49442 * 328.93154 * 20 11 10 40 40 H 1.08999 * 109.49752 * 208.87269 * 20 11 10 41 41 H 1.09003 * 109.43504 * 50.15132 * 21 20 11 42 42 H 1.09000 * 109.43750 * 170.02425 * 21 20 11 43 43 H 1.09008 * 108.64627 * 181.88237 * 22 21 20 44 44 H 1.09002 * 108.64518 * 299.71969 * 22 21 20 45 45 H 1.07996 * 126.04281 * 0.04151 * 25 24 2 46 46 H 1.08004 * 125.89646 * 180.14466 * 26 25 24 47 47 H 1.09003 * 109.47091 * 90.00798 * 29 28 24 48 48 H 1.09011 * 109.47253 * 210.00264 * 29 28 24 49 49 H 1.08992 * 109.47441 * 330.00274 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9404 -3.6508 8 6 1.6848 -0.2195 -4.9000 9 1 0.5988 -0.1400 -4.8524 10 6 2.0856 -1.0226 -6.1551 11 7 2.0591 -0.1600 -7.3599 12 6 3.0645 -0.2909 -8.2804 13 1 3.3282 0.5428 -8.9143 14 6 3.7448 -1.4951 -8.3987 15 7 3.2446 -2.5887 -7.8636 16 14 5.3699 -1.5635 -9.3172 17 1 5.7118 -0.2086 -9.8198 18 1 6.4379 -2.0345 -8.3992 19 1 5.2522 -2.5017 -10.4623 20 6 1.0205 0.8133 -7.6069 21 6 1.4194 2.1641 -6.9630 22 6 1.3606 2.0504 -5.4917 23 8 2.2451 1.0680 -4.9579 24 6 2.0324 -0.7105 1.2305 25 6 2.2028 -2.0459 1.3669 26 6 2.6860 -2.2884 2.6569 27 7 2.7940 -1.1406 3.2755 28 7 2.3871 -0.1293 2.3956 29 6 2.3533 1.3057 2.6883 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5436 34 1 1.8325 -1.9681 -3.6509 35 1 3.2854 -0.9399 -3.6506 36 1 3.0914 -1.4207 -6.0205 37 1 1.3881 -1.8492 -6.2903 38 1 3.7198 -3.4303 -7.9466 39 1 0.0843 0.4648 -7.1707 40 1 0.8941 0.9457 -8.6814 41 1 2.4334 2.4251 -7.2664 42 1 0.7309 2.9413 -7.2945 43 1 1.6114 3.0181 -5.0571 44 1 0.3411 1.7953 -5.2024 45 1 2.0034 -2.7923 0.6123 46 1 2.9249 -3.2564 3.0720 47 1 1.3795 1.5696 3.1009 48 1 3.1320 1.5475 3.4118 49 1 2.5233 1.8680 1.7701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149733444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = 3.850488 kcal Electronic energy + Delta-G solvation = -29937.410804 eV Core-core repulsion = 25901.531223 eV Total energy + Delta-G solvation = -4035.879581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.38584 -40.87278 -40.06203 -36.87646 -35.99675 -35.33165 -34.09555 -33.84725 -32.83134 -30.51586 -29.79144 -27.55294 -27.30177 -27.02950 -25.52984 -24.14723 -22.34776 -22.30508 -21.77633 -21.42067 -20.34598 -18.85079 -18.04131 -17.91978 -17.73277 -17.04312 -16.73525 -16.41618 -16.28403 -16.06400 -15.67752 -15.41511 -15.22605 -14.82825 -14.62075 -14.48007 -14.21049 -14.09078 -13.92972 -13.83837 -13.56631 -13.34624 -13.24720 -13.10322 -13.02839 -12.97575 -12.78517 -12.39385 -12.29691 -12.26929 -11.97933 -11.80036 -11.62017 -11.42059 -11.32740 -10.85292 -10.55201 -10.26000 -10.20335 -10.09709 -9.39489 -8.66165 -7.85698 -5.30041 0.85015 1.42660 1.46410 1.54618 1.54891 1.62785 1.89251 2.22205 2.51537 2.95567 3.28062 3.31808 3.59825 3.67633 3.76233 4.04657 4.07438 4.08403 4.16430 4.25538 4.30235 4.35727 4.45307 4.49599 4.61788 4.65697 4.68388 4.69781 4.76034 4.81896 4.87867 4.89532 4.90857 4.91644 5.17650 5.21378 5.24921 5.29300 5.31179 5.42516 5.54470 5.63242 5.73118 5.74566 6.09977 6.40377 6.55587 6.61460 6.72659 7.18021 7.25547 7.94857 8.31624 9.18924 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002654 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.986297 B =10548.314421 C =11548.928507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 H 0.137 0.863 4 C 0.515 3.485 5 O -0.570 6.570 6 N -0.702 5.702 7 C 0.138 3.862 8 C 0.079 3.921 9 H 0.078 0.922 10 C 0.172 3.828 11 N -0.603 5.603 12 C -0.257 4.257 13 H 0.061 0.939 14 C -0.049 4.049 15 N -0.933 5.933 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.295 1.295 19 H -0.291 1.291 20 C 0.147 3.853 21 C -0.171 4.171 22 C 0.068 3.932 23 O -0.378 6.378 24 C 0.087 3.913 25 C -0.258 4.258 26 C 0.032 3.968 27 N -0.327 5.327 28 N -0.374 5.374 29 C 0.086 3.914 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.247 0.753 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.137 0.863 46 H 0.201 0.799 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 12.330 18.459 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 H 0.155 0.845 4 C 0.300 3.700 5 O -0.448 6.448 6 N -0.354 5.354 7 C 0.013 3.987 8 C 0.018 3.982 9 H 0.096 0.904 10 C 0.046 3.954 11 N -0.325 5.325 12 C -0.388 4.388 13 H 0.079 0.921 14 C -0.244 4.244 15 N -0.579 5.579 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.222 1.222 19 H -0.218 1.218 20 C 0.020 3.980 21 C -0.211 4.211 22 C -0.008 4.008 23 O -0.296 6.296 24 C -0.041 4.041 25 C -0.287 4.287 26 C -0.152 4.152 27 N -0.149 5.149 28 N -0.158 5.158 29 C -0.054 4.054 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.155 0.845 46 H 0.218 0.782 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.518 12.281 19.718 25.104 hybrid contribution 0.767 -1.008 -1.781 2.186 sum -8.750 11.273 17.937 22.921 Atomic orbital electron populations 1.21802 0.88710 1.03574 1.05096 1.19842 0.99595 1.00198 0.86135 0.84536 1.20674 0.79774 0.84381 0.85129 1.90750 1.39134 1.28038 1.86898 1.45642 1.53327 1.32209 1.04228 1.21177 0.98749 0.95780 0.82994 1.22728 0.97226 0.84683 0.93519 0.90390 1.21384 0.99527 0.90495 0.83998 1.43836 1.26011 1.42873 1.19827 1.19456 1.10543 0.94882 1.13896 0.92131 1.25665 1.02587 0.94981 1.01210 1.70178 1.38766 0.98468 1.50529 0.85354 0.80639 0.77614 0.77752 1.19326 1.22234 1.21788 1.20921 0.90144 0.88852 0.98051 1.22152 1.01661 0.99482 0.97814 1.21585 0.93486 0.92115 0.93639 1.87449 1.42929 1.16928 1.82330 1.20573 1.01073 0.93470 0.88984 1.21465 1.13077 0.95833 0.98314 1.24225 0.99402 0.97865 0.93747 1.77254 1.23749 0.96473 1.17457 1.48727 1.50404 1.07971 1.08693 1.22247 1.05150 0.73285 1.04686 0.88631 0.92635 0.89503 0.74698 0.90913 0.93595 0.94149 0.97067 0.94325 0.93452 0.94244 0.94115 0.88521 0.88450 0.91531 0.84492 0.78211 0.88571 0.88996 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.07 71.98 0.65 -0.77 16 2 C -0.03 -0.57 2.92 -12.28 -0.04 -0.61 16 3 H 0.14 1.40 6.95 -2.39 -0.02 1.38 16 4 C 0.51 13.04 7.08 87.66 0.62 13.66 16 5 O -0.57 -20.24 13.76 -3.02 -0.04 -20.28 16 6 N -0.70 -16.21 5.39 -463.06 -2.50 -18.70 16 7 C 0.14 4.43 5.24 86.38 0.45 4.89 16 8 C 0.08 2.62 2.35 31.03 0.07 2.70 16 9 H 0.08 2.15 7.21 -2.39 -0.02 2.13 16 10 C 0.17 8.00 4.50 86.49 0.39 8.39 16 11 N -0.60 -29.15 2.59 -696.37 -1.80 -30.95 16 12 C -0.26 -14.09 9.43 84.03 0.79 -13.30 16 13 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 14 C -0.05 -2.78 4.88 84.86 0.41 -2.36 16 15 N -0.93 -55.27 10.98 21.65 0.24 -55.03 16 16 Si 0.96 46.06 29.58 68.60 2.03 48.09 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 20 C 0.15 5.55 5.68 87.40 0.50 6.05 16 21 C -0.17 -5.08 6.03 29.57 0.18 -4.91 16 22 C 0.07 1.70 6.04 70.32 0.42 2.13 16 23 O -0.38 -12.55 9.78 -144.95 -1.42 -13.96 16 24 C 0.09 1.99 5.72 41.40 0.24 2.23 16 25 C -0.26 -7.04 9.14 21.99 0.20 -6.84 16 26 C 0.03 0.80 12.02 85.24 1.02 1.83 16 27 N -0.33 -8.57 12.58 -57.02 -0.72 -9.29 16 28 N -0.37 -7.98 4.01 -356.04 -1.43 -9.40 16 29 C 0.09 0.92 11.27 127.77 1.44 2.36 16 30 H 0.09 0.58 7.56 -2.39 -0.02 0.56 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.42 6.56 7.88 -92.71 -0.73 5.83 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.04 2.21 6.24 -2.39 -0.01 2.19 16 37 H 0.01 0.57 8.02 -2.39 -0.02 0.55 16 38 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.04 1.54 7.97 -2.39 -0.02 1.53 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.07 1.29 7.28 -2.39 -0.02 1.28 16 45 H 0.14 4.14 6.83 -2.91 -0.02 4.12 16 46 H 0.20 3.83 8.06 -2.91 -0.02 3.80 16 47 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.11 0.62 6.97 -2.39 -0.02 0.61 16 Total: -1.00 -79.55 389.88 1.94 -77.61 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.22 Total: 16.50 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.36 Total: 15.43 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -6.21 Total: -123.38 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.46 Total: -34.25 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -79.55 1.94 -77.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149733444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.460 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds