Wall clock time and date at job start Tue Mar 31 2020 20:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.52997 * 109.46899 * 120.00246 * 2 1 3 5 5 C 1.50705 * 109.47066 * 294.99380 * 4 2 1 6 6 C 1.34671 * 126.58609 * 85.03020 * 5 4 2 7 7 N 1.34127 * 108.01543 * 179.97438 * 6 5 4 8 8 C 1.30492 * 109.26184 * 359.97438 * 7 6 5 9 9 N 1.35053 * 108.69763 * 359.77264 * 8 7 6 10 10 H 0.96992 * 126.39661 * 180.26449 * 9 8 7 11 11 C 1.50705 * 109.46652 * 239.99701 * 2 1 3 12 12 O 1.21278 * 119.99728 * 239.99438 * 11 2 1 13 13 N 1.34776 * 119.99686 * 60.00700 * 11 2 1 14 14 C 1.46507 * 119.99571 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.46781 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.34324 * 305.20007 * 15 14 13 17 17 C 1.54302 * 109.40355 * 185.39675 * 15 14 13 18 18 N 1.48204 * 110.71515 * 200.48072 * 17 15 14 19 19 C 1.36935 * 118.53670 * 138.79756 * 18 17 15 20 20 H 1.08007 * 119.99875 * 206.10640 * 19 18 17 21 21 C 1.38810 * 120.00211 * 26.09417 * 19 18 17 22 22 N 1.31621 * 119.99451 * 15.49326 * 21 19 18 23 23 Si 1.86799 * 120.00150 * 195.49369 * 21 19 18 24 24 H 1.48497 * 109.47238 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47197 * 120.00391 * 23 21 19 26 26 H 1.48502 * 109.47000 * 239.99880 * 23 21 19 27 27 C 1.44466 * 122.95179 * 318.82077 * 18 17 15 28 28 C 1.54869 * 109.35142 * 88.89979 * 27 18 17 29 29 C 1.47683 * 109.68114 * 290.08928 * 28 27 18 30 30 O 1.40531 * 109.40736 * 64.99906 * 15 14 13 31 31 H 1.09006 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46956 * 300.00137 * 1 2 3 33 33 H 1.08999 * 109.47345 * 59.99797 * 1 2 3 34 34 H 1.08995 * 109.47646 * 54.99995 * 4 2 1 35 35 H 1.09003 * 109.46901 * 175.00066 * 4 2 1 36 36 H 1.07998 * 125.99365 * 359.95969 * 6 5 4 37 37 H 1.07997 * 125.65445 * 179.97438 * 8 7 6 38 38 H 0.96994 * 120.00561 * 359.97438 * 13 11 2 39 39 H 1.08992 * 109.47392 * 59.99546 * 14 13 11 40 40 H 1.09000 * 109.46471 * 299.99369 * 14 13 11 41 41 H 1.09003 * 109.22868 * 320.80725 * 17 15 14 42 42 H 1.09000 * 109.22889 * 80.17918 * 17 15 14 43 43 H 0.97005 * 119.99803 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49442 * 328.93154 * 27 18 17 45 45 H 1.08999 * 109.49752 * 208.87269 * 27 18 17 46 46 H 1.09003 * 109.43504 * 50.15132 * 28 27 18 47 47 H 1.09000 * 109.43750 * 170.02425 * 28 27 18 48 48 H 1.09008 * 108.64627 * 181.88237 * 29 28 27 49 49 H 1.09002 * 108.64518 * 299.71969 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 6 0.4666 -0.0213 3.1304 7 7 0.5108 0.8297 4.1662 8 6 1.6683 1.4320 4.1794 9 7 2.4062 0.9747 3.1449 10 1 3.3087 1.2471 2.9169 11 6 2.0323 -0.7105 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1954 -0.9404 -3.6508 15 6 1.6848 -0.2195 -4.9000 16 1 0.5988 -0.1400 -4.8524 17 6 2.0856 -1.0226 -6.1551 18 7 2.0591 -0.1600 -7.3599 19 6 3.0645 -0.2909 -8.2804 20 1 3.3282 0.5428 -8.9143 21 6 3.7448 -1.4951 -8.3987 22 7 3.2446 -2.5887 -7.8636 23 14 5.3699 -1.5635 -9.3172 24 1 5.7118 -0.2086 -9.8198 25 1 6.4379 -2.0345 -8.3992 26 1 5.2522 -2.5017 -10.4623 27 6 1.0205 0.8133 -7.6069 28 6 1.4194 2.1641 -6.9630 29 6 1.3606 2.0504 -5.4917 30 8 2.2451 1.0680 -4.9579 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2056 36 1 -0.3652 -0.6576 2.8668 37 1 1.9851 2.1711 4.9003 38 1 1.1489 0.5385 -2.5436 39 1 1.8325 -1.9681 -3.6509 40 1 3.2854 -0.9399 -3.6506 41 1 3.0914 -1.4207 -6.0205 42 1 1.3881 -1.8492 -6.2903 43 1 3.7198 -3.4303 -7.9466 44 1 0.0843 0.4648 -7.1707 45 1 0.8941 0.9457 -8.6814 46 1 2.4334 2.4251 -7.2664 47 1 0.7309 2.9413 -7.2945 48 1 1.6114 3.0181 -5.0571 49 1 0.3411 1.7953 -5.2024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150426301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:24 Heat of formation + Delta-G solvation = -6.638023 kcal Electronic energy + Delta-G solvation = -29505.592146 eV Core-core repulsion = 25469.257749 eV Total energy + Delta-G solvation = -4036.334397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35882 -39.94150 -38.79747 -35.38637 -35.09666 -34.64639 -32.79718 -32.56488 -31.16104 -30.10927 -28.66679 -26.88668 -25.76473 -25.34041 -23.60871 -22.37856 -21.69539 -21.07130 -20.98324 -20.09629 -19.50352 -18.14809 -17.27927 -16.80613 -16.31784 -16.00655 -15.56847 -15.29404 -15.05618 -14.84128 -14.61293 -14.13651 -14.10447 -13.79176 -13.73457 -13.36514 -13.20505 -12.87791 -12.80600 -12.52419 -12.40192 -12.31833 -12.24897 -11.82122 -11.58183 -11.38214 -11.17074 -10.89995 -10.75631 -10.59926 -10.31036 -10.25825 -10.23498 -10.04869 -9.95451 -9.76718 -9.64562 -8.93477 -8.87839 -8.63438 -8.42891 -6.72010 -5.80017 -3.22788 1.72379 2.68106 2.80382 2.87262 3.27215 3.37853 3.45785 3.47506 4.23387 4.34905 4.48206 4.50025 4.57077 4.62649 4.88629 5.03199 5.08863 5.14004 5.25458 5.35869 5.40194 5.42482 5.46873 5.51027 5.54417 5.59507 5.71218 5.81101 5.86745 5.88462 5.98037 6.03140 6.08429 6.20094 6.27969 6.34821 6.44076 6.45134 6.60446 6.73652 6.94110 7.05370 7.14950 7.54722 7.57565 7.76644 7.80371 7.92941 8.27737 8.44365 9.19828 9.86479 10.30428 11.28049 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002296 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.559398 B =12192.781504 C =12898.218347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.027 4.027 5 C -0.015 4.015 6 C -0.023 4.023 7 N -0.495 5.495 8 C 0.179 3.821 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.514 3.486 12 O -0.543 6.543 13 N -0.719 5.719 14 C 0.124 3.876 15 C 0.056 3.944 16 H 0.047 0.953 17 C 0.166 3.834 18 N -0.586 5.586 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.906 5.906 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.157 3.843 28 C -0.184 4.184 29 C 0.079 3.921 30 O -0.360 6.360 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.169 0.831 37 H 0.206 0.794 38 H 0.398 0.602 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 9.109 18.897 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.111 0.889 4 C -0.066 4.066 5 C -0.131 4.131 6 C -0.171 4.171 7 N -0.214 5.214 8 C -0.105 4.105 9 N -0.171 5.171 10 H 0.257 0.743 11 C 0.299 3.701 12 O -0.420 6.420 13 N -0.369 5.369 14 C 0.000 4.000 15 C -0.004 4.004 16 H 0.065 0.935 17 C 0.040 3.960 18 N -0.307 5.307 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.551 5.551 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.218 1.218 27 C 0.029 3.971 28 C -0.224 4.224 29 C 0.002 3.998 30 O -0.279 6.279 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.232 0.768 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.743 8.356 19.592 22.060 hybrid contribution 1.513 0.429 -1.325 2.057 sum -4.230 8.785 18.267 20.706 Atomic orbital electron populations 1.21876 0.92469 1.03135 1.03031 1.21256 0.98185 1.00565 0.92596 0.88860 1.19854 1.02185 0.97684 0.86854 1.21310 0.93996 0.98383 0.99417 1.22129 0.97646 1.02569 0.94785 1.70286 1.19495 1.10159 1.21445 1.24961 0.88845 1.02906 0.93775 1.43345 1.16493 1.33086 1.24137 0.74281 1.20483 0.80291 0.84707 0.84600 1.90718 1.38020 1.26435 1.86833 1.46005 1.53282 1.31878 1.05773 1.21593 1.00595 0.95832 0.81948 1.23174 0.95835 0.85248 0.96185 0.93500 1.21634 1.02579 0.90154 0.81677 1.43587 1.25382 1.41963 1.19727 1.19213 1.09941 0.95306 1.13895 0.91726 1.25008 0.99810 0.95004 0.99629 1.70034 1.37801 0.98328 1.48895 0.86236 0.84062 0.77478 0.79057 1.20343 1.21528 1.21766 1.20667 0.90427 0.88061 0.97972 1.22298 1.02578 1.00946 0.96615 1.21292 0.92128 0.91482 0.94873 1.87436 1.41266 1.16780 1.82374 0.91668 0.90845 0.92092 0.88553 0.90146 0.81376 0.77711 0.76803 0.90096 0.90497 0.89797 0.94498 0.93628 0.95369 0.93119 0.91136 0.92359 0.91621 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.77 37.16 0.33 -0.81 16 2 C -0.10 -0.94 2.71 -91.77 -0.25 -1.19 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.03 -0.24 4.60 -27.88 -0.13 -0.37 16 5 C -0.02 -0.13 6.09 -81.60 -0.50 -0.63 16 6 C -0.02 -0.23 10.10 -17.81 -0.18 -0.41 16 7 N -0.49 -5.28 11.25 -14.67 -0.16 -5.44 16 8 C 0.18 1.34 13.04 -90.37 -1.18 0.16 16 9 N -0.57 -3.80 6.15 -10.30 -0.06 -3.86 16 10 H 0.42 1.66 8.96 -40.82 -0.37 1.30 16 11 C 0.51 6.70 7.15 -10.98 -0.08 6.62 16 12 O -0.54 -9.22 15.92 5.56 0.09 -9.13 16 13 N -0.72 -9.34 5.39 -60.29 -0.32 -9.67 16 14 C 0.12 2.03 5.24 -4.04 -0.02 2.01 16 15 C 0.06 0.99 2.35 -26.05 -0.06 0.93 16 16 H 0.05 0.75 7.21 -51.93 -0.37 0.38 16 17 C 0.17 3.79 4.50 -2.42 -0.01 3.78 16 18 N -0.59 -14.17 2.59 -171.46 -0.44 -14.61 16 19 C -0.25 -6.85 9.43 -15.06 -0.14 -7.00 16 20 H 0.06 1.74 7.88 -52.48 -0.41 1.32 16 21 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 22 N -0.91 -25.82 10.98 55.49 0.61 -25.21 16 23 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.16 3.13 5.68 -4.14 -0.02 3.11 16 28 C -0.18 -3.09 6.03 -28.32 -0.17 -3.26 16 29 C 0.08 1.21 6.04 34.59 0.21 1.42 16 30 O -0.36 -6.56 9.78 -34.11 -0.33 -6.89 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.54 6.18 -51.93 -0.32 0.22 16 33 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 36 H 0.17 1.39 8.02 -52.49 -0.42 0.97 16 37 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.40 4.31 7.88 -40.82 -0.32 3.98 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 2.19 6.24 -51.93 -0.32 1.87 16 42 H 0.04 0.90 8.02 -51.93 -0.42 0.49 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 45 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 49 H 0.03 0.46 7.28 -51.93 -0.38 0.08 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -33.97 390.33 -9.99 -43.96 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.92 Total: 3.80 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.29 Total: 4.39 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.39 Total: -58.79 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.24 Total: -16.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.97 -9.99 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150426301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.321 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds