Wall clock time and date at job start Tue Mar 31 2020 20:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.52997 * 109.46899 * 120.00246 * 2 1 3 5 5 C 1.50705 * 109.47066 * 294.99380 * 4 2 1 6 6 C 1.34671 * 126.58609 * 85.03020 * 5 4 2 7 7 N 1.34127 * 108.01543 * 179.97438 * 6 5 4 8 8 C 1.30492 * 109.26184 * 359.97438 * 7 6 5 9 9 N 1.35053 * 108.69763 * 359.77264 * 8 7 6 10 10 H 0.96992 * 126.39661 * 180.26449 * 9 8 7 11 11 C 1.50705 * 109.46652 * 239.99701 * 2 1 3 12 12 O 1.21278 * 119.99728 * 239.99438 * 11 2 1 13 13 N 1.34776 * 119.99686 * 60.00700 * 11 2 1 14 14 C 1.46507 * 119.99571 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.46781 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.34324 * 305.20007 * 15 14 13 17 17 C 1.54302 * 109.40355 * 185.39675 * 15 14 13 18 18 N 1.48204 * 110.71515 * 200.48072 * 17 15 14 19 19 C 1.36935 * 118.53670 * 138.79756 * 18 17 15 20 20 H 1.08007 * 119.99875 * 206.10640 * 19 18 17 21 21 C 1.38810 * 120.00211 * 26.09417 * 19 18 17 22 22 N 1.31621 * 119.99451 * 15.49326 * 21 19 18 23 23 Si 1.86799 * 120.00150 * 195.49369 * 21 19 18 24 24 H 1.48497 * 109.47238 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47197 * 120.00391 * 23 21 19 26 26 H 1.48502 * 109.47000 * 239.99880 * 23 21 19 27 27 C 1.44466 * 122.95179 * 318.82077 * 18 17 15 28 28 C 1.54869 * 109.35142 * 88.89979 * 27 18 17 29 29 C 1.47683 * 109.68114 * 290.08928 * 28 27 18 30 30 O 1.40531 * 109.40736 * 64.99906 * 15 14 13 31 31 H 1.09006 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46956 * 300.00137 * 1 2 3 33 33 H 1.08999 * 109.47345 * 59.99797 * 1 2 3 34 34 H 1.08995 * 109.47646 * 54.99995 * 4 2 1 35 35 H 1.09003 * 109.46901 * 175.00066 * 4 2 1 36 36 H 1.07998 * 125.99365 * 359.95969 * 6 5 4 37 37 H 1.07997 * 125.65445 * 179.97438 * 8 7 6 38 38 H 0.96994 * 120.00561 * 359.97438 * 13 11 2 39 39 H 1.08992 * 109.47392 * 59.99546 * 14 13 11 40 40 H 1.09000 * 109.46471 * 299.99369 * 14 13 11 41 41 H 1.09003 * 109.22868 * 320.80725 * 17 15 14 42 42 H 1.09000 * 109.22889 * 80.17918 * 17 15 14 43 43 H 0.97005 * 119.99803 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49442 * 328.93154 * 27 18 17 45 45 H 1.08999 * 109.49752 * 208.87269 * 27 18 17 46 46 H 1.09003 * 109.43504 * 50.15132 * 28 27 18 47 47 H 1.09000 * 109.43750 * 170.02425 * 28 27 18 48 48 H 1.09008 * 108.64627 * 181.88237 * 29 28 27 49 49 H 1.09002 * 108.64518 * 299.71969 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 6 0.4666 -0.0213 3.1304 7 7 0.5108 0.8297 4.1662 8 6 1.6683 1.4320 4.1794 9 7 2.4062 0.9747 3.1449 10 1 3.3087 1.2471 2.9169 11 6 2.0323 -0.7105 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1954 -0.9404 -3.6508 15 6 1.6848 -0.2195 -4.9000 16 1 0.5988 -0.1400 -4.8524 17 6 2.0856 -1.0226 -6.1551 18 7 2.0591 -0.1600 -7.3599 19 6 3.0645 -0.2909 -8.2804 20 1 3.3282 0.5428 -8.9143 21 6 3.7448 -1.4951 -8.3987 22 7 3.2446 -2.5887 -7.8636 23 14 5.3699 -1.5635 -9.3172 24 1 5.7118 -0.2086 -9.8198 25 1 6.4379 -2.0345 -8.3992 26 1 5.2522 -2.5017 -10.4623 27 6 1.0205 0.8133 -7.6069 28 6 1.4194 2.1641 -6.9630 29 6 1.3606 2.0504 -5.4917 30 8 2.2451 1.0680 -4.9579 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2056 36 1 -0.3652 -0.6576 2.8668 37 1 1.9851 2.1711 4.9003 38 1 1.1489 0.5385 -2.5436 39 1 1.8325 -1.9681 -3.6509 40 1 3.2854 -0.9399 -3.6506 41 1 3.0914 -1.4207 -6.0205 42 1 1.3881 -1.8492 -6.2903 43 1 3.7198 -3.4303 -7.9466 44 1 0.0843 0.4648 -7.1707 45 1 0.8941 0.9457 -8.6814 46 1 2.4334 2.4251 -7.2664 47 1 0.7309 2.9413 -7.2945 48 1 1.6114 3.0181 -5.0571 49 1 0.3411 1.7953 -5.2024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150426301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:23 Heat of formation + Delta-G solvation = -29.850233 kcal Electronic energy + Delta-G solvation = -29506.598703 eV Core-core repulsion = 25469.257749 eV Total energy + Delta-G solvation = -4037.340954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.96801 -41.08709 -40.18242 -36.91048 -36.15528 -35.90946 -34.12825 -33.38114 -32.89690 -30.98241 -30.07569 -27.53918 -27.27991 -27.05219 -24.84317 -23.62871 -22.38906 -22.32894 -21.72934 -21.54439 -20.75042 -18.87399 -18.78594 -18.01756 -17.76151 -17.27041 -16.74699 -16.50000 -16.32512 -15.95750 -15.63047 -15.45518 -15.25599 -15.03373 -14.58754 -14.52971 -14.37653 -14.20749 -13.97230 -13.86887 -13.59284 -13.50675 -13.26560 -13.06609 -13.03651 -12.79326 -12.41019 -12.31419 -12.23910 -12.11055 -11.99344 -11.80315 -11.44719 -11.36235 -10.98513 -10.90948 -10.80001 -10.56333 -10.26201 -10.12060 -9.27539 -8.67937 -7.86965 -5.31565 1.11777 1.42171 1.45423 1.54396 1.63487 2.08560 2.25772 2.37266 2.50749 2.92269 3.26775 3.56052 3.60100 3.83498 3.90996 3.98341 4.04730 4.12399 4.18756 4.26829 4.27600 4.38218 4.42495 4.48594 4.58629 4.62554 4.66256 4.77052 4.79022 4.84239 4.88812 4.88914 4.93986 5.11518 5.14539 5.21827 5.26916 5.30088 5.38631 5.41710 5.51786 5.61357 5.70897 5.81675 6.39006 6.54571 6.57954 6.59120 7.16414 7.16896 7.24484 7.92867 8.30208 9.17918 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002296 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.559398 B =12192.781504 C =12898.218347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.112 0.888 4 C -0.020 4.020 5 C -0.017 4.017 6 C -0.039 4.039 7 N -0.538 5.538 8 C 0.188 3.812 9 N -0.559 5.559 10 H 0.433 0.567 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.707 5.707 14 C 0.136 3.864 15 C 0.078 3.922 16 H 0.075 0.925 17 C 0.172 3.828 18 N -0.603 5.603 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.959 3.041 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.147 3.853 28 C -0.170 4.170 29 C 0.068 3.932 30 O -0.377 6.377 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.012 0.988 43 H 0.248 0.752 44 H 0.046 0.954 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 11.964 20.244 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.130 0.870 4 C -0.059 4.059 5 C -0.133 4.133 6 C -0.186 4.186 7 N -0.257 5.257 8 C -0.096 4.096 9 N -0.164 5.164 10 H 0.273 0.727 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.358 5.358 14 C 0.011 3.989 15 C 0.018 3.982 16 H 0.093 0.907 17 C 0.046 3.954 18 N -0.325 5.325 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.788 3.212 24 H -0.193 1.193 25 H -0.221 1.221 26 H -0.218 1.218 27 C 0.020 3.980 28 C -0.211 4.211 29 C -0.008 4.008 30 O -0.296 6.296 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.190 0.810 37 H 0.258 0.742 38 H 0.250 0.750 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.744 11.281 20.933 24.717 hybrid contribution 1.778 -0.394 -1.752 2.527 sum -4.965 10.887 19.182 22.608 Atomic orbital electron populations 1.21865 0.91022 1.03229 1.03951 1.21208 0.99125 1.00674 0.90152 0.86991 1.19727 1.01582 0.97461 0.87167 1.21113 0.94008 0.98877 0.99334 1.22304 0.98346 1.02911 0.95045 1.70276 1.21427 1.11565 1.22468 1.25662 0.87920 1.02277 0.93703 1.43336 1.16998 1.32379 1.23655 0.72682 1.21215 0.79228 0.84108 0.85404 1.90706 1.39983 1.28534 1.87414 1.45804 1.53214 1.32092 1.04728 1.21183 0.98801 0.95741 0.83172 1.22738 0.97087 0.84706 0.93719 0.90726 1.21392 0.99599 0.90481 0.83952 1.43833 1.26018 1.42843 1.19829 1.19466 1.10529 0.94932 1.13901 0.92085 1.25691 1.02682 0.94945 1.01219 1.70183 1.38817 0.98497 1.50546 0.85325 0.80506 0.77620 0.77735 1.19330 1.22120 1.21766 1.20916 0.90125 0.88835 0.98078 1.22147 1.01732 0.99536 0.97642 1.21575 0.93380 0.92081 0.93772 1.87440 1.42857 1.16938 1.82367 0.92081 0.90144 0.90875 0.89417 0.90904 0.81035 0.74237 0.74996 0.90994 0.93418 0.93973 0.97051 0.94272 0.93594 0.94124 0.93971 0.88533 0.88574 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.77 71.98 0.63 -1.22 16 2 C -0.09 -1.45 2.71 -11.54 -0.03 -1.48 16 3 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.02 -0.34 4.60 29.85 0.14 -0.20 16 5 C -0.02 -0.26 6.09 40.95 0.25 -0.01 16 6 C -0.04 -0.70 10.10 83.52 0.84 0.14 16 7 N -0.54 -10.64 11.25 -200.31 -2.25 -12.90 16 8 C 0.19 2.35 13.04 180.26 2.35 4.70 16 9 N -0.56 -6.20 6.15 -186.49 -1.15 -7.35 16 10 H 0.43 2.34 8.96 -92.71 -0.83 1.51 16 11 C 0.51 12.90 7.15 87.66 0.63 13.53 16 12 O -0.59 -20.19 15.92 -3.02 -0.05 -20.24 16 13 N -0.71 -17.31 5.39 -463.06 -2.50 -19.80 16 14 C 0.14 4.49 5.24 86.38 0.45 4.94 16 15 C 0.08 2.68 2.35 31.03 0.07 2.75 16 16 H 0.07 2.19 7.21 -2.39 -0.02 2.17 16 17 C 0.17 8.10 4.50 86.49 0.39 8.49 16 18 N -0.60 -29.46 2.59 -696.37 -1.80 -31.27 16 19 C -0.26 -14.19 9.43 84.03 0.79 -13.40 16 20 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 21 C -0.05 -2.84 4.88 84.86 0.41 -2.43 16 22 N -0.93 -55.44 10.98 21.65 0.24 -55.20 16 23 Si 0.96 45.99 29.58 68.60 2.03 48.02 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.15 5.67 5.68 87.40 0.50 6.17 16 28 C -0.17 -5.23 6.03 29.57 0.18 -5.05 16 29 C 0.07 1.80 6.04 70.32 0.42 2.23 16 30 O -0.38 -12.98 9.78 -144.95 -1.42 -14.40 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.99 6.18 -2.39 -0.01 0.97 16 33 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 36 H 0.17 2.74 8.02 -2.91 -0.02 2.71 16 37 H 0.24 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.41 7.63 7.88 -92.71 -0.73 6.90 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 41 H 0.04 2.32 6.24 -2.39 -0.01 2.30 16 42 H 0.01 0.59 8.02 -2.39 -0.02 0.57 16 43 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 44 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 45 H 0.04 1.61 7.97 -2.39 -0.02 1.60 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.06 1.36 7.28 -2.39 -0.02 1.35 16 Total: -1.00 -77.29 390.33 0.54 -76.76 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.60 Total: 17.21 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 8.03 Total: 19.16 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -7.46 Total: -126.52 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.47 Total: -34.63 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.29 0.54 -76.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150426301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds