Wall clock time and date at job start Tue Mar 31 2020 20:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47231 * 2 1 4 4 C 1.52999 * 109.47329 * 120.00388 * 2 1 3 5 5 C 1.50703 * 109.47077 * 294.99825 * 4 2 1 6 6 C 1.34667 * 126.59082 * 85.02026 * 5 4 2 7 7 N 1.34129 * 108.02154 * 179.97438 * 6 5 4 8 8 C 1.30502 * 109.25553 * 0.02562 * 7 6 5 9 9 N 1.35047 * 108.69865 * 359.97438 * 8 7 6 10 10 H 0.96995 * 126.39514 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47175 * 240.00236 * 2 1 3 12 12 O 1.21285 * 119.99936 * 240.00199 * 11 2 1 13 13 N 1.34773 * 120.00094 * 59.99650 * 11 2 1 14 14 C 1.46501 * 120.00017 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47314 * 180.02562 * 14 13 11 16 16 H 1.09002 * 108.57036 * 59.99698 * 15 14 13 17 17 C 1.46914 * 108.62665 * 177.94172 * 15 14 13 18 18 N 1.50112 * 106.78268 * 177.91812 * 17 15 14 19 19 C 1.36942 * 120.63623 * 111.32837 * 18 17 15 20 20 H 1.07989 * 120.00099 * 155.66599 * 19 18 17 21 21 C 1.38816 * 119.99714 * 335.66529 * 19 18 17 22 22 N 1.31625 * 119.99950 * 340.72743 * 21 19 18 23 23 Si 1.86797 * 119.99750 * 160.73301 * 21 19 18 24 24 H 1.48497 * 109.47253 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47183 * 120.00093 * 23 21 19 26 26 H 1.48509 * 109.47006 * 239.99744 * 23 21 19 27 27 C 1.43422 * 118.72950 * 291.35465 * 18 17 15 28 28 C 1.55326 * 116.24111 * 89.35063 * 27 18 17 29 29 C 1.55193 * 108.87542 * 319.45975 * 28 27 18 30 30 O 1.39805 * 110.45826 * 322.14622 * 29 28 27 31 31 H 1.08994 * 109.47360 * 60.00281 * 1 2 3 32 32 H 1.09011 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47023 * 299.99687 * 1 2 3 34 34 H 1.09000 * 109.47617 * 175.00294 * 4 2 1 35 35 H 1.08998 * 109.47250 * 54.99968 * 4 2 1 36 36 H 1.08001 * 125.99267 * 0.23517 * 6 5 4 37 37 H 1.07999 * 125.64798 * 179.97438 * 8 7 6 38 38 H 0.97001 * 120.00260 * 0.02562 * 13 11 2 39 39 H 1.09002 * 109.47076 * 299.99466 * 14 13 11 40 40 H 1.08995 * 109.47451 * 59.99777 * 14 13 11 41 41 H 1.08998 * 109.98848 * 297.24259 * 17 15 14 42 42 H 1.09005 * 109.98810 * 58.50971 * 17 15 14 43 43 H 0.97000 * 119.99275 * 179.97438 * 22 21 19 44 44 H 1.09001 * 108.12636 * 211.10735 * 27 18 17 45 45 H 1.09002 * 108.12501 * 327.58974 * 27 18 17 46 46 H 1.08996 * 109.57490 * 79.27765 * 28 27 18 47 47 H 1.08998 * 109.57071 * 199.52387 * 28 27 18 48 48 H 1.09005 * 109.25291 * 82.42574 * 29 28 27 49 49 H 1.08997 * 109.26079 * 201.90307 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 6 0.4667 -0.0214 3.1303 7 7 0.5108 0.8295 4.1663 8 6 1.6680 1.4325 4.1789 9 7 2.4039 0.9791 3.1413 10 1 3.3043 1.2557 2.9099 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2499 -2.4546 14 6 2.1946 -0.9408 -3.6507 15 6 1.6852 -0.2192 -4.9000 16 1 2.0573 0.8053 -4.8851 17 6 2.2251 -0.8970 -6.0864 18 7 1.6601 -0.1901 -7.2841 19 6 2.4685 0.5557 -8.0999 20 1 2.1856 0.7299 -9.1274 21 6 3.6517 1.0877 -7.6060 22 7 3.8253 1.2132 -6.3073 23 14 4.9975 1.6256 -8.7845 24 1 4.5588 1.3808 -10.1819 25 1 5.2700 3.0733 -8.5972 26 1 6.2340 0.8498 -8.5112 27 6 0.2573 -0.3103 -7.5573 28 6 -0.6649 0.7489 -6.8936 29 6 -0.1727 1.0055 -5.4443 30 8 0.2624 -0.1867 -4.8577 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.1264 -0.7995 1.2056 35 1 1.6055 -1.7199 1.2950 36 1 -0.3637 -0.6607 2.8691 37 1 1.9847 2.1718 4.8998 38 1 1.1493 0.5389 -2.5436 39 1 3.2846 -0.9411 -3.6510 40 1 1.8310 -1.9683 -3.6506 41 1 3.3129 -0.8284 -6.0919 42 1 1.9179 -1.9429 -6.0900 43 1 4.6523 1.5847 -5.9622 44 1 0.1160 -0.2542 -8.6367 45 1 -0.0688 -1.2972 -7.2291 46 1 -0.6234 1.6774 -7.4630 47 1 -1.6899 0.3788 -6.8728 48 1 0.6514 1.7186 -5.4655 49 1 -0.9909 1.4191 -4.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150426302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:29 Heat of formation + Delta-G solvation = -3.104499 kcal Electronic energy + Delta-G solvation = -29896.497927 eV Core-core repulsion = 25860.316755 eV Total energy + Delta-G solvation = -4036.181172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.28565 -39.83135 -38.84193 -35.20807 -35.01396 -34.52511 -32.70343 -32.19901 -31.23635 -29.97640 -28.57598 -26.77971 -25.70986 -25.35100 -23.48792 -22.34063 -21.61618 -20.98845 -20.82838 -19.74392 -19.54585 -18.06437 -17.22993 -16.85955 -16.09439 -15.76540 -15.42533 -15.10726 -14.94007 -14.68602 -14.38372 -14.22978 -13.97661 -13.90181 -13.67508 -13.29264 -13.15342 -12.93502 -12.68781 -12.53959 -12.24406 -12.16028 -11.98723 -11.46034 -11.45026 -11.30678 -11.21586 -10.89625 -10.77739 -10.49954 -10.23846 -10.18962 -10.18872 -10.01483 -9.73453 -9.60291 -9.50996 -8.84548 -8.70411 -8.57612 -8.53049 -6.86242 -5.96829 -3.35163 1.79821 2.82834 2.88510 2.94287 3.28960 3.38398 3.40216 3.47642 4.39375 4.43563 4.59159 4.65177 4.70766 4.73855 5.00608 5.12979 5.19934 5.24166 5.25844 5.33691 5.48883 5.61436 5.65935 5.70844 5.78242 5.88264 5.91127 5.97198 6.01829 6.10479 6.12711 6.29167 6.37536 6.43962 6.51670 6.53748 6.63377 6.67080 6.78171 6.88803 6.92479 7.08006 7.12396 7.28588 7.68312 7.78325 7.83444 8.08637 8.27855 8.44641 9.02799 9.71003 10.25193 11.12244 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002521 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.903384 B =11105.168165 C =11878.306210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.026 4.026 5 C -0.014 4.014 6 C -0.024 4.024 7 N -0.495 5.495 8 C 0.178 3.822 9 N -0.567 5.567 10 H 0.419 0.581 11 C 0.513 3.487 12 O -0.550 6.550 13 N -0.711 5.711 14 C 0.120 3.880 15 C 0.061 3.939 16 H 0.107 0.893 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.908 5.908 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.161 3.839 28 C -0.172 4.172 29 C 0.067 3.933 30 O -0.369 6.369 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.206 0.794 38 H 0.400 0.600 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.019 0.981 43 H 0.254 0.746 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 0.987 15.166 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.110 0.890 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.172 4.172 7 N -0.214 5.214 8 C -0.106 4.106 9 N -0.171 5.171 10 H 0.257 0.743 11 C 0.299 3.701 12 O -0.429 6.429 13 N -0.360 5.360 14 C -0.004 4.004 15 C 0.002 3.998 16 H 0.124 0.876 17 C 0.018 3.982 18 N -0.308 5.308 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.197 4.197 22 N -0.553 5.553 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.215 1.215 27 C 0.032 3.968 28 C -0.213 4.213 29 C -0.011 4.011 30 O -0.288 6.288 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.234 0.766 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.554 0.279 15.913 16.554 hybrid contribution 1.657 1.171 -1.386 2.457 sum -2.897 1.451 14.527 14.884 Atomic orbital electron populations 1.21865 0.92434 1.03087 1.03058 1.21248 0.98242 1.00512 0.92628 0.88961 1.19851 1.02093 0.97657 0.86900 1.21328 0.94032 0.98187 0.99454 1.22123 0.97609 1.02564 0.94861 1.70286 1.19407 1.10192 1.21526 1.24950 0.88924 1.02987 0.93716 1.43340 1.16730 1.32925 1.24066 0.74295 1.20454 0.80296 0.84688 0.84706 1.90685 1.38587 1.26664 1.86952 1.45928 1.52732 1.31798 1.05578 1.21710 0.99234 0.96244 0.83189 1.22194 0.80190 1.03810 0.93610 0.87587 1.20742 1.00919 0.91591 0.84955 1.44118 1.01693 1.55437 1.29551 1.19312 1.01155 1.25151 0.91992 0.91239 1.24902 1.00176 0.98831 0.95743 1.69881 1.26004 1.48588 1.10876 0.86198 0.82122 0.77702 0.80584 1.20360 1.21866 1.21537 1.20368 0.84586 0.95192 0.96681 1.23574 0.99047 1.01481 0.97199 1.22376 0.98568 0.87248 0.92892 1.87557 1.21516 1.40423 1.79279 0.91854 0.91778 0.91012 0.90215 0.88633 0.81389 0.77744 0.76564 0.90458 0.91994 0.87849 0.96247 0.93584 0.94899 0.95009 0.92522 0.93157 0.91911 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.77 37.16 0.33 -1.05 16 2 C -0.10 -1.09 2.71 -91.77 -0.25 -1.34 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.03 -0.26 4.60 -27.88 -0.13 -0.38 16 5 C -0.01 -0.13 6.09 -81.60 -0.50 -0.63 16 6 C -0.02 -0.25 10.10 -17.81 -0.18 -0.43 16 7 N -0.50 -5.66 11.25 -14.66 -0.16 -5.83 16 8 C 0.18 1.46 13.04 -90.37 -1.18 0.29 16 9 N -0.57 -4.26 6.15 -10.30 -0.06 -4.33 16 10 H 0.42 2.00 8.96 -40.82 -0.37 1.63 16 11 C 0.51 7.43 7.15 -10.99 -0.08 7.35 16 12 O -0.55 -9.86 15.92 5.55 0.09 -9.77 16 13 N -0.71 -10.66 5.31 -60.29 -0.32 -10.98 16 14 C 0.12 2.14 5.25 -4.04 -0.02 2.12 16 15 C 0.06 1.19 1.98 -29.65 -0.06 1.13 16 16 H 0.11 2.35 5.23 -51.93 -0.27 2.08 16 17 C 0.14 3.16 4.71 -4.94 -0.02 3.14 16 18 N -0.59 -13.80 2.61 -174.51 -0.46 -14.26 16 19 C -0.25 -6.31 9.62 -15.06 -0.14 -6.46 16 20 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.91 -23.20 9.57 55.49 0.53 -22.67 16 23 Si 0.90 20.56 29.60 -169.99 -5.03 15.53 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.16 3.32 5.32 -4.44 -0.02 3.30 16 28 C -0.17 -3.13 6.75 -24.34 -0.16 -3.29 16 29 C 0.07 1.21 6.38 38.32 0.24 1.45 16 30 O -0.37 -6.95 9.44 -32.41 -0.31 -7.25 16 31 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 34 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.17 1.55 8.02 -52.49 -0.42 1.12 16 37 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.40 5.45 7.68 -40.82 -0.31 5.13 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 44 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 45 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.28 6.66 -51.93 -0.35 0.93 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -30.46 386.32 -9.92 -40.38 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.76 Total: 8.23 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.26 Total: 5.13 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.47 Total: -58.07 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.22 Total: -17.03 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.46 -9.92 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150426302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.279 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds