Wall clock time and date at job start Tue Mar 31 2020 20:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47231 * 2 1 4 4 C 1.52999 * 109.47329 * 120.00388 * 2 1 3 5 5 C 1.50703 * 109.47077 * 294.99825 * 4 2 1 6 6 C 1.34667 * 126.59082 * 85.02026 * 5 4 2 7 7 N 1.34129 * 108.02154 * 179.97438 * 6 5 4 8 8 C 1.30502 * 109.25553 * 0.02562 * 7 6 5 9 9 N 1.35047 * 108.69865 * 359.97438 * 8 7 6 10 10 H 0.96995 * 126.39514 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47175 * 240.00236 * 2 1 3 12 12 O 1.21285 * 119.99936 * 240.00199 * 11 2 1 13 13 N 1.34773 * 120.00094 * 59.99650 * 11 2 1 14 14 C 1.46501 * 120.00017 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47314 * 180.02562 * 14 13 11 16 16 H 1.09002 * 108.57036 * 59.99698 * 15 14 13 17 17 C 1.46914 * 108.62665 * 177.94172 * 15 14 13 18 18 N 1.50112 * 106.78268 * 177.91812 * 17 15 14 19 19 C 1.36942 * 120.63623 * 111.32837 * 18 17 15 20 20 H 1.07989 * 120.00099 * 155.66599 * 19 18 17 21 21 C 1.38816 * 119.99714 * 335.66529 * 19 18 17 22 22 N 1.31625 * 119.99950 * 340.72743 * 21 19 18 23 23 Si 1.86797 * 119.99750 * 160.73301 * 21 19 18 24 24 H 1.48497 * 109.47253 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47183 * 120.00093 * 23 21 19 26 26 H 1.48509 * 109.47006 * 239.99744 * 23 21 19 27 27 C 1.43422 * 118.72950 * 291.35465 * 18 17 15 28 28 C 1.55326 * 116.24111 * 89.35063 * 27 18 17 29 29 C 1.55193 * 108.87542 * 319.45975 * 28 27 18 30 30 O 1.39805 * 110.45826 * 322.14622 * 29 28 27 31 31 H 1.08994 * 109.47360 * 60.00281 * 1 2 3 32 32 H 1.09011 * 109.46990 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47023 * 299.99687 * 1 2 3 34 34 H 1.09000 * 109.47617 * 175.00294 * 4 2 1 35 35 H 1.08998 * 109.47250 * 54.99968 * 4 2 1 36 36 H 1.08001 * 125.99267 * 0.23517 * 6 5 4 37 37 H 1.07999 * 125.64798 * 179.97438 * 8 7 6 38 38 H 0.97001 * 120.00260 * 0.02562 * 13 11 2 39 39 H 1.09002 * 109.47076 * 299.99466 * 14 13 11 40 40 H 1.08995 * 109.47451 * 59.99777 * 14 13 11 41 41 H 1.08998 * 109.98848 * 297.24259 * 17 15 14 42 42 H 1.09005 * 109.98810 * 58.50971 * 17 15 14 43 43 H 0.97000 * 119.99275 * 179.97438 * 22 21 19 44 44 H 1.09001 * 108.12636 * 211.10735 * 27 18 17 45 45 H 1.09002 * 108.12501 * 327.58974 * 27 18 17 46 46 H 1.08996 * 109.57490 * 79.27765 * 28 27 18 47 47 H 1.08998 * 109.57071 * 199.52387 * 28 27 18 48 48 H 1.09005 * 109.25291 * 82.42574 * 29 28 27 49 49 H 1.08997 * 109.26079 * 201.90307 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 6 0.4667 -0.0214 3.1303 7 7 0.5108 0.8295 4.1663 8 6 1.6680 1.4325 4.1789 9 7 2.4039 0.9791 3.1413 10 1 3.3043 1.2557 2.9099 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2499 -2.4546 14 6 2.1946 -0.9408 -3.6507 15 6 1.6852 -0.2192 -4.9000 16 1 2.0573 0.8053 -4.8851 17 6 2.2251 -0.8970 -6.0864 18 7 1.6601 -0.1901 -7.2841 19 6 2.4685 0.5557 -8.0999 20 1 2.1856 0.7299 -9.1274 21 6 3.6517 1.0877 -7.6060 22 7 3.8253 1.2132 -6.3073 23 14 4.9975 1.6256 -8.7845 24 1 4.5588 1.3808 -10.1819 25 1 5.2700 3.0733 -8.5972 26 1 6.2340 0.8498 -8.5112 27 6 0.2573 -0.3103 -7.5573 28 6 -0.6649 0.7489 -6.8936 29 6 -0.1727 1.0055 -5.4443 30 8 0.2624 -0.1867 -4.8577 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.1264 -0.7995 1.2056 35 1 1.6055 -1.7199 1.2950 36 1 -0.3637 -0.6607 2.8691 37 1 1.9847 2.1718 4.8998 38 1 1.1493 0.5389 -2.5436 39 1 3.2846 -0.9411 -3.6510 40 1 1.8310 -1.9683 -3.6506 41 1 3.3129 -0.8284 -6.0919 42 1 1.9179 -1.9429 -6.0900 43 1 4.6523 1.5847 -5.9622 44 1 0.1160 -0.2542 -8.6367 45 1 -0.0688 -1.2972 -7.2291 46 1 -0.6234 1.6774 -7.4630 47 1 -1.6899 0.3788 -6.8728 48 1 0.6514 1.7186 -5.4655 49 1 -0.9909 1.4191 -4.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150426302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:28 Heat of formation + Delta-G solvation = -22.013619 kcal Electronic energy + Delta-G solvation = -29897.317888 eV Core-core repulsion = 25860.316755 eV Total energy + Delta-G solvation = -4037.001133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.96580 -41.14149 -40.30570 -36.80148 -36.14396 -35.85739 -33.84859 -33.38017 -32.92137 -30.89417 -30.09334 -27.53791 -27.22982 -27.06799 -24.79327 -23.67088 -22.39068 -22.34414 -21.71274 -21.31564 -20.78436 -18.94676 -18.78337 -18.02442 -17.66782 -17.07382 -16.62685 -16.54361 -16.14587 -16.00684 -15.58371 -15.47833 -15.36836 -14.97442 -14.79283 -14.45153 -14.42700 -14.17663 -13.97497 -13.61667 -13.56112 -13.47387 -13.29007 -13.05910 -12.94031 -12.64769 -12.50540 -12.26967 -12.23439 -12.10523 -11.93189 -11.76790 -11.37550 -11.18204 -10.97578 -10.91014 -10.76430 -10.56679 -10.26511 -10.03562 -9.27467 -8.71797 -7.90262 -5.30515 1.12028 1.45760 1.51208 1.58503 1.66291 2.15057 2.26514 2.40621 2.51993 3.12449 3.27206 3.50486 3.61772 3.84462 3.91602 3.98958 4.14963 4.24613 4.28551 4.37312 4.39636 4.41336 4.45292 4.57587 4.66219 4.74254 4.76988 4.79560 4.79878 4.84268 4.93215 4.98807 5.08373 5.11630 5.18871 5.19403 5.29068 5.34697 5.38616 5.40682 5.45545 5.52507 5.68427 5.81683 6.36126 6.51767 6.58809 6.59825 7.10651 7.16734 7.26254 7.82882 8.35678 9.15729 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002521 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.903384 B =11105.168165 C =11878.306210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.108 0.892 4 C -0.018 4.018 5 C -0.017 4.017 6 C -0.039 4.039 7 N -0.538 5.538 8 C 0.188 3.812 9 N -0.559 5.559 10 H 0.433 0.567 11 C 0.513 3.487 12 O -0.586 6.586 13 N -0.706 5.706 14 C 0.133 3.867 15 C 0.080 3.920 16 H 0.085 0.915 17 C 0.144 3.856 18 N -0.602 5.602 19 C -0.261 4.261 20 H 0.062 0.938 21 C -0.037 4.037 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.154 3.846 28 C -0.165 4.165 29 C 0.068 3.932 30 O -0.366 6.366 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.409 0.591 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.250 0.750 44 H 0.030 0.970 45 H 0.034 0.966 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 2.024 16.244 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.057 4.057 5 C -0.134 4.134 6 C -0.186 4.186 7 N -0.257 5.257 8 C -0.096 4.096 9 N -0.164 5.164 10 H 0.273 0.727 11 C 0.300 3.700 12 O -0.467 6.467 13 N -0.356 5.356 14 C 0.008 3.992 15 C 0.021 3.979 16 H 0.102 0.898 17 C 0.019 3.981 18 N -0.323 5.323 19 C -0.391 4.391 20 H 0.080 0.920 21 C -0.233 4.233 22 N -0.562 5.562 23 Si 0.788 3.212 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.026 3.974 28 C -0.206 4.206 29 C -0.010 4.010 30 O -0.284 6.284 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.189 0.811 37 H 0.258 0.742 38 H 0.245 0.755 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.410 1.331 16.985 17.875 hybrid contribution 1.902 0.830 -1.727 2.700 sum -3.508 2.161 15.257 15.804 Atomic orbital electron populations 1.21834 0.91262 1.03146 1.03640 1.21206 0.98978 1.00623 0.90538 0.87403 1.19711 1.01625 0.97428 0.86925 1.21126 0.94092 0.98759 0.99386 1.22300 0.98274 1.02898 0.95129 1.70278 1.21329 1.11581 1.22528 1.25666 0.87972 1.02313 0.93626 1.43333 1.17242 1.32202 1.23596 0.72685 1.21150 0.79304 0.84176 0.85342 1.90671 1.40183 1.28412 1.87435 1.45839 1.52824 1.31929 1.05055 1.21349 0.98136 0.95987 0.83760 1.21735 0.80642 1.02174 0.93330 0.89778 1.20673 0.99556 0.92006 0.85862 1.44232 1.02797 1.55452 1.29820 1.19426 1.02069 1.25497 0.92117 0.91990 1.25459 1.01512 0.99339 0.96972 1.70001 1.25859 1.48763 1.11607 0.85359 0.79773 0.76886 0.79218 1.20081 1.22049 1.21997 1.20485 0.83739 0.96280 0.96898 1.23491 0.99765 1.00463 0.96875 1.22428 0.98709 0.86337 0.93481 1.87556 1.20634 1.40972 1.79258 0.91502 0.92044 0.90110 0.90728 0.89287 0.81051 0.74201 0.75506 0.92142 0.92478 0.90412 0.95849 0.94014 0.95201 0.94725 0.92827 0.90337 0.94523 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.77 71.98 0.63 -1.76 16 2 C -0.09 -1.78 2.71 -11.54 -0.03 -1.81 16 3 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.02 -0.33 4.60 29.85 0.14 -0.19 16 5 C -0.02 -0.30 6.09 40.95 0.25 -0.05 16 6 C -0.04 -0.77 10.10 83.52 0.84 0.07 16 7 N -0.54 -11.49 11.25 -200.31 -2.25 -13.74 16 8 C 0.19 2.64 13.04 180.26 2.35 4.99 16 9 N -0.56 -7.16 6.15 -186.49 -1.15 -8.31 16 10 H 0.43 3.07 8.96 -92.71 -0.83 2.24 16 11 C 0.51 14.50 7.15 87.66 0.63 15.12 16 12 O -0.59 -21.03 15.92 -3.05 -0.05 -21.08 16 13 N -0.71 -20.72 5.31 -463.06 -2.46 -23.18 16 14 C 0.13 4.76 5.25 86.38 0.45 5.21 16 15 C 0.08 3.15 1.98 28.71 0.06 3.21 16 16 H 0.08 3.77 5.23 -2.39 -0.01 3.75 16 17 C 0.14 6.47 4.71 83.79 0.39 6.86 16 18 N -0.60 -28.44 2.61 -706.03 -1.84 -30.28 16 19 C -0.26 -13.50 9.62 84.03 0.81 -12.69 16 20 H 0.06 3.23 7.88 -2.92 -0.02 3.20 16 21 C -0.04 -1.88 4.92 84.86 0.42 -1.46 16 22 N -0.92 -47.53 9.57 21.65 0.21 -47.32 16 23 Si 0.96 42.60 29.60 68.60 2.03 44.63 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 C 0.15 6.26 5.32 87.75 0.47 6.72 16 28 C -0.17 -5.68 6.75 32.15 0.22 -5.46 16 29 C 0.07 2.33 6.38 72.73 0.46 2.79 16 30 O -0.37 -13.25 9.44 -138.87 -1.31 -14.56 16 31 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.26 6.18 -2.39 -0.01 1.25 16 34 H 0.07 1.47 7.96 -2.39 -0.02 1.45 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.17 3.04 8.02 -2.91 -0.02 3.02 16 37 H 0.24 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.41 10.58 7.68 -92.71 -0.71 9.86 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 42 H 0.02 1.01 8.14 -2.38 -0.02 1.00 16 43 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 44 H 0.03 1.21 7.96 -2.39 -0.02 1.19 16 45 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.04 1.46 6.66 -2.38 -0.02 1.45 16 49 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -65.63 386.32 0.69 -64.94 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.57 Total: 27.35 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 8.09 Total: 21.56 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -7.50 Total: -122.83 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.36 Total: -35.64 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -65.63 0.69 -64.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150426302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.923 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds