Wall clock time and date at job start Tue Mar 31 2020 19:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.50698 * 109.47051 * 239.99717 * 2 1 3 5 5 O 1.21276 * 120.00053 * 240.00520 * 4 2 1 6 6 N 1.34779 * 119.99589 * 60.00150 * 4 2 1 7 7 C 1.46509 * 119.99435 * 180.02562 * 6 4 2 8 8 C 1.53009 * 109.46425 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.40673 * 304.83820 * 8 7 6 10 10 C 1.54299 * 109.39825 * 184.99715 * 8 7 6 11 11 N 1.48182 * 110.69114 * 200.48977 * 10 8 7 12 12 C 1.36937 * 118.51179 * 138.77561 * 11 10 8 13 13 H 1.08001 * 119.99881 * 319.23254 * 12 11 10 14 14 C 1.38809 * 120.00258 * 139.23602 * 12 11 10 15 15 N 1.31612 * 120.00286 * 156.53620 * 14 12 11 16 16 Si 1.86805 * 119.99769 * 336.53886 * 14 12 11 17 17 H 1.48499 * 109.47095 * 95.51600 * 16 14 12 18 18 H 1.48497 * 109.46973 * 215.52397 * 16 14 12 19 19 H 1.48505 * 109.46687 * 335.52204 * 16 14 12 20 20 C 1.44461 * 122.97325 * 318.80312 * 11 10 8 21 21 C 1.54879 * 109.32930 * 88.91097 * 20 11 10 22 22 C 1.47691 * 109.67824 * 290.10162 * 21 20 11 23 23 O 1.40526 * 109.40290 * 64.59953 * 8 7 6 24 24 C 1.50705 * 109.46997 * 119.99845 * 2 1 3 25 25 C 1.39869 * 126.03615 * 60.02396 * 24 2 1 26 26 N 1.30845 * 108.20035 * 179.97438 * 25 24 2 27 27 N 1.40078 * 108.20393 * 0.02562 * 26 25 24 28 28 C 1.46503 * 126.04027 * 179.97438 * 27 26 25 29 29 C 1.34956 * 107.92613 * 359.75706 * 27 26 25 30 30 H 1.09000 * 109.47106 * 299.99950 * 1 2 3 31 31 H 1.08996 * 109.47568 * 59.99929 * 1 2 3 32 32 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 33 33 H 0.96994 * 120.00494 * 359.97438 * 6 4 2 34 34 H 1.08989 * 109.46946 * 299.99553 * 7 6 4 35 35 H 1.08996 * 109.46964 * 60.00079 * 7 6 4 36 36 H 1.08994 * 109.23550 * 320.80685 * 10 8 7 37 37 H 1.08999 * 109.23187 * 80.22555 * 10 8 7 38 38 H 0.97001 * 120.00230 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.49111 * 208.86603 * 20 11 10 40 40 H 1.08997 * 109.49564 * 328.95155 * 20 11 10 41 41 H 1.08998 * 109.43466 * 50.16132 * 21 20 11 42 42 H 1.08999 * 109.43528 * 170.03641 * 21 20 11 43 43 H 1.08999 * 108.64144 * 181.88817 * 22 21 20 44 44 H 1.09006 * 108.64036 * 299.71774 * 22 21 20 45 45 H 1.07998 * 125.90289 * 359.95444 * 25 24 2 46 46 H 1.08996 * 109.47359 * 90.01920 * 28 27 26 47 47 H 1.08997 * 109.47466 * 210.02690 * 28 27 26 48 48 H 1.09001 * 109.46626 * 330.02115 * 28 27 26 49 49 H 1.08000 * 126.12581 * 180.23989 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9410 -3.6507 8 6 1.6841 -0.2200 -4.9000 9 1 0.5976 -0.1448 -4.8562 10 6 2.0926 -1.0185 -6.1555 11 7 2.0655 -0.1532 -7.3581 12 6 3.0747 -0.2769 -8.2753 13 1 4.0939 -0.4070 -7.9425 14 6 2.7879 -0.2351 -9.6328 15 7 3.7233 0.1076 -10.4929 16 14 1.0741 -0.6653 -10.2390 17 1 0.2810 0.5791 -10.4053 18 1 1.1723 -1.3680 -11.5435 19 1 0.4066 -1.5491 -9.2496 20 6 1.0229 0.8155 -7.6064 21 6 1.4135 2.1667 -6.9580 22 6 1.3508 2.0491 -5.4871 23 8 2.2381 1.0703 -4.9534 24 6 2.0323 -0.7104 1.2305 25 6 1.7738 -2.0410 1.5757 26 7 2.3782 -2.2942 2.7082 27 7 3.0409 -1.1310 3.1203 28 6 3.8399 -0.9799 4.3389 29 6 2.8172 -0.1752 2.1940 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 3.2845 -0.9414 -3.6509 35 1 1.8308 -1.9685 -3.6505 36 1 3.0999 -1.4119 -6.0188 37 1 1.3992 -1.8478 -6.2950 38 1 3.5230 0.1365 -11.4415 39 1 0.8997 0.9498 -8.6811 40 1 0.0871 0.4615 -7.1739 41 1 2.4271 2.4332 -7.2577 42 1 0.7223 2.9414 -7.2898 43 1 1.5956 3.0169 -5.0495 44 1 0.3316 1.7886 -5.2016 45 1 1.1779 -2.7387 1.0060 46 1 4.8775 -1.2383 4.1274 47 1 3.7856 0.0528 4.6834 48 1 3.4511 -1.6419 5.1126 49 1 3.1952 0.8362 2.2186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150840962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:09 Heat of formation + Delta-G solvation = 28.533168 kcal Electronic energy + Delta-G solvation = -29482.384913 eV Core-core repulsion = 25447.575654 eV Total energy + Delta-G solvation = -4034.809260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48583 -39.76216 -38.86062 -35.43574 -34.72788 -34.59416 -32.92760 -32.23987 -31.67734 -29.76346 -28.91426 -26.76862 -26.13513 -25.41414 -24.19024 -22.45941 -21.35752 -21.20937 -20.96979 -20.19617 -19.52386 -17.47358 -16.72904 -16.63035 -16.46409 -16.13243 -15.66901 -15.48917 -15.23535 -14.75889 -14.53017 -14.44750 -14.04115 -13.64801 -13.55796 -13.27813 -13.17878 -13.13767 -12.84434 -12.69229 -12.59849 -12.42978 -12.31963 -12.00886 -11.89751 -11.79428 -11.65505 -11.09402 -10.93197 -10.68656 -10.53876 -10.34176 -10.13050 -9.87992 -9.73949 -9.63328 -9.52791 -9.01727 -8.96365 -8.57787 -8.48948 -6.76519 -6.00039 -3.42461 1.69947 2.32526 2.59809 2.73159 3.29087 3.32522 3.45361 3.50603 4.09267 4.23252 4.51460 4.55186 4.61272 4.76256 4.81624 4.82420 4.92271 5.04264 5.07373 5.17409 5.23804 5.26082 5.33569 5.42932 5.47463 5.49057 5.52837 5.66574 5.75109 5.78576 5.80460 5.86585 5.98274 6.07049 6.10512 6.23547 6.38621 6.47304 6.48297 6.54667 6.66703 6.73455 6.78704 7.00317 7.53516 7.56543 7.76749 8.10012 8.30771 8.41806 9.03846 9.71861 10.08534 11.15453 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002192 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.121816 B =12768.159672 C =13002.693240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 H 0.100 0.900 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.723 5.723 7 C 0.123 3.877 8 C 0.066 3.934 9 H 0.055 0.945 10 C 0.130 3.870 11 N -0.597 5.597 12 C -0.269 4.269 13 H 0.076 0.924 14 C 0.038 3.962 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.287 1.287 18 H -0.300 1.300 19 H -0.270 1.270 20 C 0.146 3.854 21 C -0.180 4.180 22 C 0.079 3.921 23 O -0.356 6.356 24 C -0.216 4.216 25 C 0.082 3.918 26 N -0.303 5.303 27 N -0.380 5.380 28 C 0.104 3.896 29 C 0.060 3.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.178 0.822 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 4.156 26.368 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 H 0.118 0.882 4 C 0.300 3.700 5 O -0.409 6.409 6 N -0.375 5.375 7 C -0.001 4.001 8 C 0.005 3.995 9 H 0.072 0.928 10 C 0.004 3.996 11 N -0.319 5.319 12 C -0.398 4.398 13 H 0.093 0.907 14 C -0.163 4.163 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.215 1.215 18 H -0.228 1.228 19 H -0.195 1.195 20 C 0.020 3.980 21 C -0.220 4.220 22 C 0.002 3.998 23 O -0.274 6.274 24 C -0.228 4.228 25 C -0.105 4.105 26 N -0.123 5.123 27 N -0.162 5.162 28 C -0.038 4.038 29 C -0.087 4.087 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.195 0.805 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.704 2.607 27.392 28.321 hybrid contribution -1.473 0.883 -1.439 2.241 sum -8.177 3.490 25.953 27.433 Atomic orbital electron populations 1.21758 0.92478 1.02910 1.02463 1.19507 0.96911 0.99311 0.89491 0.88208 1.20561 0.80308 0.84843 0.84326 1.90714 1.37303 1.26214 1.86650 1.45938 1.53837 1.32113 1.05575 1.21540 1.00667 0.95608 0.82240 1.22793 0.96487 0.85410 0.94769 0.92752 1.21880 1.00608 0.91669 0.85439 1.43789 1.27609 1.39075 1.21471 1.18794 0.88085 1.47451 0.85491 0.90662 1.25527 0.96670 0.98065 0.96042 1.69893 1.34020 1.47385 1.02462 0.86958 0.86384 0.78499 0.77705 1.21458 1.22797 1.19520 1.21083 0.90139 0.88050 0.98773 1.22174 1.03580 1.00235 0.96013 1.21350 0.91846 0.91575 0.94996 1.87448 1.41489 1.16274 1.82186 1.19431 1.08662 0.95590 0.99081 1.23605 0.98183 0.95542 0.93139 1.77368 1.13660 1.05613 1.15706 1.48379 1.40430 1.08408 1.19004 1.21818 0.94709 1.03353 0.83921 1.22234 0.99684 0.95805 0.90940 0.91470 0.91956 0.91943 0.76737 0.90432 0.90305 0.91390 0.95297 0.92730 0.92457 0.95196 0.90099 0.92191 0.91105 0.94728 0.80490 0.90832 0.89603 0.89404 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.98 37.16 0.33 -0.60 16 2 C -0.03 -0.26 3.09 -92.92 -0.29 -0.55 16 3 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 4 C 0.51 6.36 7.11 -10.99 -0.08 6.28 16 5 O -0.53 -8.85 15.37 5.56 0.09 -8.77 16 6 N -0.72 -8.31 5.38 -60.29 -0.32 -8.64 16 7 C 0.12 1.72 5.24 -4.03 -0.02 1.69 16 8 C 0.07 1.01 2.35 -26.05 -0.06 0.95 16 9 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 10 C 0.13 2.52 6.12 -2.44 -0.01 2.51 16 11 N -0.60 -13.89 2.11 -171.48 -0.36 -14.25 16 12 C -0.27 -7.49 9.67 -15.06 -0.15 -7.64 16 13 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 14 C 0.04 1.08 5.20 -17.43 -0.09 0.99 16 15 N -0.90 -27.24 13.97 55.49 0.78 -26.47 16 16 Si 0.87 21.91 25.27 -169.99 -4.30 17.61 16 17 H -0.29 -6.93 6.71 56.52 0.38 -6.55 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.15 3.07 4.47 -4.14 -0.02 3.05 16 21 C -0.18 -3.23 6.03 -28.31 -0.17 -3.40 16 22 C 0.08 1.18 6.04 34.59 0.21 1.39 16 23 O -0.36 -6.00 9.76 -34.10 -0.33 -6.33 16 24 C -0.22 -2.26 4.36 -105.05 -0.46 -2.72 16 25 C 0.08 0.99 10.77 -17.36 -0.19 0.80 16 26 N -0.30 -3.86 12.58 30.63 0.39 -3.47 16 27 N -0.38 -3.77 4.01 -68.16 -0.27 -4.04 16 28 C 0.10 0.55 11.47 59.85 0.69 1.24 16 29 C 0.06 0.54 11.38 -17.22 -0.20 0.34 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 32 H 0.06 0.46 8.02 -51.93 -0.42 0.05 16 33 H 0.40 3.69 7.87 -40.82 -0.32 3.37 16 34 H 0.08 1.24 8.14 -51.94 -0.42 0.81 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 39 H 0.06 1.34 3.66 -51.93 -0.19 1.15 16 40 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 45 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -36.25 391.11 -6.92 -43.17 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.97 Total: 0.96 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.50 Total: 4.34 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.20 Total: -56.87 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.25 Total: -15.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.30 Total: 17.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.25 -6.92 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150840962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.699 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds