Wall clock time and date at job start Tue Mar 31 2020 19:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.50698 * 109.47051 * 239.99717 * 2 1 3 5 5 O 1.21276 * 120.00053 * 240.00520 * 4 2 1 6 6 N 1.34779 * 119.99589 * 60.00150 * 4 2 1 7 7 C 1.46509 * 119.99435 * 180.02562 * 6 4 2 8 8 C 1.53009 * 109.46425 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.40673 * 304.83820 * 8 7 6 10 10 C 1.54299 * 109.39825 * 184.99715 * 8 7 6 11 11 N 1.48182 * 110.69114 * 200.48977 * 10 8 7 12 12 C 1.36937 * 118.51179 * 138.77561 * 11 10 8 13 13 H 1.08001 * 119.99881 * 319.23254 * 12 11 10 14 14 C 1.38809 * 120.00258 * 139.23602 * 12 11 10 15 15 N 1.31612 * 120.00286 * 156.53620 * 14 12 11 16 16 Si 1.86805 * 119.99769 * 336.53886 * 14 12 11 17 17 H 1.48499 * 109.47095 * 95.51600 * 16 14 12 18 18 H 1.48497 * 109.46973 * 215.52397 * 16 14 12 19 19 H 1.48505 * 109.46687 * 335.52204 * 16 14 12 20 20 C 1.44461 * 122.97325 * 318.80312 * 11 10 8 21 21 C 1.54879 * 109.32930 * 88.91097 * 20 11 10 22 22 C 1.47691 * 109.67824 * 290.10162 * 21 20 11 23 23 O 1.40526 * 109.40290 * 64.59953 * 8 7 6 24 24 C 1.50705 * 109.46997 * 119.99845 * 2 1 3 25 25 C 1.39869 * 126.03615 * 60.02396 * 24 2 1 26 26 N 1.30845 * 108.20035 * 179.97438 * 25 24 2 27 27 N 1.40078 * 108.20393 * 0.02562 * 26 25 24 28 28 C 1.46503 * 126.04027 * 179.97438 * 27 26 25 29 29 C 1.34956 * 107.92613 * 359.75706 * 27 26 25 30 30 H 1.09000 * 109.47106 * 299.99950 * 1 2 3 31 31 H 1.08996 * 109.47568 * 59.99929 * 1 2 3 32 32 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 33 33 H 0.96994 * 120.00494 * 359.97438 * 6 4 2 34 34 H 1.08989 * 109.46946 * 299.99553 * 7 6 4 35 35 H 1.08996 * 109.46964 * 60.00079 * 7 6 4 36 36 H 1.08994 * 109.23550 * 320.80685 * 10 8 7 37 37 H 1.08999 * 109.23187 * 80.22555 * 10 8 7 38 38 H 0.97001 * 120.00230 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.49111 * 208.86603 * 20 11 10 40 40 H 1.08997 * 109.49564 * 328.95155 * 20 11 10 41 41 H 1.08998 * 109.43466 * 50.16132 * 21 20 11 42 42 H 1.08999 * 109.43528 * 170.03641 * 21 20 11 43 43 H 1.08999 * 108.64144 * 181.88817 * 22 21 20 44 44 H 1.09006 * 108.64036 * 299.71774 * 22 21 20 45 45 H 1.07998 * 125.90289 * 359.95444 * 25 24 2 46 46 H 1.08996 * 109.47359 * 90.01920 * 28 27 26 47 47 H 1.08997 * 109.47466 * 210.02690 * 28 27 26 48 48 H 1.09001 * 109.46626 * 330.02115 * 28 27 26 49 49 H 1.08000 * 126.12581 * 180.23989 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1946 -0.9410 -3.6507 8 6 1.6841 -0.2200 -4.9000 9 1 0.5976 -0.1448 -4.8562 10 6 2.0926 -1.0185 -6.1555 11 7 2.0655 -0.1532 -7.3581 12 6 3.0747 -0.2769 -8.2753 13 1 4.0939 -0.4070 -7.9425 14 6 2.7879 -0.2351 -9.6328 15 7 3.7233 0.1076 -10.4929 16 14 1.0741 -0.6653 -10.2390 17 1 0.2810 0.5791 -10.4053 18 1 1.1723 -1.3680 -11.5435 19 1 0.4066 -1.5491 -9.2496 20 6 1.0229 0.8155 -7.6064 21 6 1.4135 2.1667 -6.9580 22 6 1.3508 2.0491 -5.4871 23 8 2.2381 1.0703 -4.9534 24 6 2.0323 -0.7104 1.2305 25 6 1.7738 -2.0410 1.5757 26 7 2.3782 -2.2942 2.7082 27 7 3.0409 -1.1310 3.1203 28 6 3.8399 -0.9799 4.3389 29 6 2.8172 -0.1752 2.1940 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 3.2845 -0.9414 -3.6509 35 1 1.8308 -1.9685 -3.6505 36 1 3.0999 -1.4119 -6.0188 37 1 1.3992 -1.8478 -6.2950 38 1 3.5230 0.1365 -11.4415 39 1 0.8997 0.9498 -8.6811 40 1 0.0871 0.4615 -7.1739 41 1 2.4271 2.4332 -7.2577 42 1 0.7223 2.9414 -7.2898 43 1 1.5956 3.0169 -5.0495 44 1 0.3316 1.7886 -5.2016 45 1 1.1779 -2.7387 1.0060 46 1 4.8775 -1.2383 4.1274 47 1 3.7856 0.0528 4.6834 48 1 3.4511 -1.6419 5.1126 49 1 3.1952 0.8362 2.2186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150840962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:08 Heat of formation + Delta-G solvation = 1.324824 kcal Electronic energy + Delta-G solvation = -29483.564755 eV Core-core repulsion = 25447.575654 eV Total energy + Delta-G solvation = -4035.989102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22008 -40.86289 -40.07959 -37.07845 -35.88198 -35.35353 -33.88411 -33.74134 -33.25070 -30.70163 -30.09736 -27.55412 -27.29339 -27.01355 -25.16890 -23.88171 -22.51645 -22.14786 -21.87681 -21.62163 -20.46654 -18.69319 -18.30115 -17.76586 -17.53039 -17.43452 -16.95204 -16.28589 -16.22271 -16.05428 -15.79636 -15.24510 -15.18571 -15.05932 -14.83717 -14.57968 -14.23191 -14.04079 -14.00948 -13.76359 -13.61295 -13.49675 -13.36482 -13.27325 -13.04059 -12.75680 -12.65607 -12.46057 -12.39680 -12.26927 -11.86541 -11.80637 -11.49174 -11.42276 -11.34735 -10.76776 -10.60956 -10.35220 -10.28494 -10.00645 -9.28795 -8.67058 -8.20438 -5.59667 0.99926 1.30080 1.41570 1.53089 1.72982 1.78213 1.81430 2.39550 2.42014 2.90101 3.05719 3.33783 3.64334 3.83582 4.03375 4.05110 4.07983 4.14660 4.18674 4.27133 4.31024 4.37030 4.43172 4.45532 4.54299 4.55795 4.63178 4.64644 4.70937 4.77963 4.83498 4.89008 4.91095 5.03737 5.04249 5.07991 5.14552 5.20339 5.23937 5.42022 5.50124 5.50810 5.70877 5.97398 6.18098 6.20482 6.56471 6.69249 6.77665 7.05824 7.40105 7.67032 8.01801 8.99758 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002192 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.121816 B =12768.159672 C =13002.693240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.019 4.019 3 H 0.128 0.872 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.710 5.710 7 C 0.133 3.867 8 C 0.082 3.918 9 H 0.088 0.912 10 C 0.121 3.879 11 N -0.608 5.608 12 C -0.261 4.261 13 H 0.025 0.975 14 C -0.021 4.021 15 N -0.949 5.949 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.309 1.309 19 H -0.258 1.258 20 C 0.135 3.865 21 C -0.172 4.172 22 C 0.072 3.928 23 O -0.376 6.376 24 C -0.236 4.236 25 C 0.063 3.937 26 N -0.345 5.345 27 N -0.384 5.384 28 C 0.094 3.906 29 C 0.066 3.934 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.414 0.586 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.172 0.828 46 H 0.078 0.922 47 H 0.120 0.880 48 H 0.088 0.912 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 6.347 28.567 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.041 4.041 3 H 0.146 0.854 4 C 0.300 3.700 5 O -0.462 6.462 6 N -0.362 5.362 7 C 0.008 3.992 8 C 0.022 3.978 9 H 0.106 0.894 10 C -0.004 4.004 11 N -0.332 5.332 12 C -0.391 4.391 13 H 0.043 0.957 14 C -0.217 4.217 15 N -0.593 5.593 16 Si 0.776 3.224 17 H -0.196 1.196 18 H -0.237 1.237 19 H -0.182 1.182 20 C 0.009 3.991 21 C -0.212 4.212 22 C -0.004 4.004 23 O -0.295 6.295 24 C -0.248 4.248 25 C -0.122 4.122 26 N -0.167 5.167 27 N -0.166 5.166 28 C -0.046 4.046 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.251 0.749 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.189 0.811 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.107 0.893 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.908 4.828 29.638 31.621 hybrid contribution -0.357 0.227 -2.037 2.080 sum -10.264 5.055 27.602 29.879 Atomic orbital electron populations 1.21758 0.90685 1.02661 1.04042 1.19536 0.98197 0.99717 0.86631 0.85383 1.21277 0.79252 0.84211 0.85289 1.90702 1.39601 1.28543 1.87314 1.45767 1.53579 1.32313 1.04562 1.21237 0.98982 0.95979 0.82978 1.22594 0.98054 0.84425 0.92765 0.89435 1.22043 0.99893 0.92382 0.86053 1.43887 1.27003 1.40621 1.21681 1.18601 0.87536 1.46238 0.86711 0.95707 1.26185 1.01042 0.98386 0.96120 1.70034 1.36736 1.49759 1.02736 0.85771 0.81324 0.78690 0.76592 1.19564 1.23733 1.18232 1.21260 0.90758 0.89134 0.97941 1.22102 1.01535 0.99239 0.98352 1.21531 0.93694 0.92446 0.92691 1.87461 1.43068 1.16936 1.82001 1.19712 1.09635 0.95166 1.00279 1.23708 0.98570 0.96645 0.93306 1.77273 1.15177 1.07710 1.16558 1.48759 1.39997 1.07729 1.20077 1.22166 0.94276 1.05619 0.82540 1.22882 0.98282 0.97041 0.89935 0.90089 0.90108 0.93178 0.74883 0.93320 0.90061 0.93864 0.93948 0.92822 0.95020 0.91632 0.94672 0.89064 0.88507 0.90778 0.81090 0.90391 0.86161 0.89317 0.77181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.98 71.98 0.65 -0.72 16 2 C -0.02 -0.28 3.09 -12.28 -0.04 -0.31 16 3 H 0.13 1.20 8.11 -2.39 -0.02 1.18 16 4 C 0.51 11.84 7.11 87.66 0.62 12.47 16 5 O -0.58 -19.44 15.37 -3.02 -0.05 -19.49 16 6 N -0.71 -14.47 5.38 -463.05 -2.49 -16.96 16 7 C 0.13 3.54 5.24 86.38 0.45 4.00 16 8 C 0.08 2.30 2.35 31.04 0.07 2.37 16 9 H 0.09 1.94 7.20 -2.39 -0.02 1.93 16 10 C 0.12 4.64 6.12 86.50 0.53 5.17 16 11 N -0.61 -28.11 2.11 -696.44 -1.47 -29.58 16 12 C -0.26 -15.07 9.67 84.03 0.81 -14.25 16 13 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 14 C -0.02 -1.23 5.20 84.86 0.44 -0.79 16 15 N -0.95 -60.08 13.97 21.65 0.30 -59.78 16 16 Si 0.95 45.75 25.27 68.60 1.73 47.49 16 17 H -0.27 -12.10 6.71 99.48 0.67 -11.43 16 18 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.13 5.32 4.47 87.40 0.39 5.71 16 21 C -0.17 -5.74 6.03 29.57 0.18 -5.57 16 22 C 0.07 1.84 6.04 70.32 0.42 2.27 16 23 O -0.38 -11.73 9.76 -144.92 -1.41 -13.15 16 24 C -0.24 -4.58 4.36 -20.14 -0.09 -4.67 16 25 C 0.06 1.54 10.77 85.23 0.92 2.46 16 26 N -0.34 -8.89 12.58 -57.02 -0.72 -9.60 16 27 N -0.38 -7.06 4.01 -369.57 -1.48 -8.55 16 28 C 0.09 0.83 11.47 127.77 1.47 2.29 16 29 C 0.07 1.02 11.38 83.54 0.95 1.97 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.53 7.56 -2.39 -0.02 0.51 16 32 H 0.05 0.65 8.02 -2.39 -0.02 0.63 16 33 H 0.41 5.86 7.87 -92.71 -0.73 5.13 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.82 7.75 -2.39 -0.02 1.80 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.03 1.41 3.66 -2.39 -0.01 1.40 16 40 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 1.37 7.27 -2.38 -0.02 1.35 16 45 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 46 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -85.45 391.11 2.37 -83.08 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.18 Total: 14.15 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 7.78 Total: 12.39 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -5.86 Total: -124.48 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.46 Total: -32.64 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.73 Total: 47.49 kcal Total: -85.45 2.37 -83.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150840962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.403 kcal (2) G-P(sol) polarization free energy of solvation -85.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds