Wall clock time and date at job start Tue Mar 31 2020 20:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.52996 * 109.46894 * 175.00377 * 4 2 1 6 6 C 1.53000 * 109.47246 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47427 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47072 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00073 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47352 * 179.97438 * 9 8 7 11 11 O 1.21293 * 119.99922 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00439 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00607 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00300 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00248 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99887 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46974 * 90.00446 * 17 15 13 19 19 H 1.48500 * 109.47335 * 210.00173 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00409 * 17 15 13 21 21 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 22 22 C 1.34779 * 119.99741 * 275.00368 * 21 2 1 23 23 O 1.21694 * 120.00441 * 359.97438 * 22 21 2 24 24 C 1.46681 * 119.99801 * 179.97438 * 22 21 2 25 25 C 1.37874 * 126.23562 * 179.97438 * 24 22 21 26 26 C 1.39835 * 107.08817 * 179.97438 * 25 24 22 27 27 C 1.35453 * 107.86012 * 0.02562 * 26 25 24 28 28 N 1.35535 * 108.87743 * 359.76660 * 27 26 25 29 29 H 0.96994 * 125.67857 * 180.26133 * 28 27 26 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 34 34 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 35 35 H 1.09001 * 109.46995 * 299.99751 * 5 4 2 36 36 H 1.08998 * 109.47867 * 60.00073 * 5 4 2 37 37 H 1.09001 * 109.46952 * 299.99816 * 6 5 4 38 38 H 1.09004 * 109.47403 * 59.99668 * 6 5 4 39 39 H 1.09001 * 109.47187 * 300.00018 * 7 6 5 40 40 H 1.09003 * 109.46799 * 60.00212 * 7 6 5 41 41 H 1.00895 * 111.00290 * 56.04672 * 8 7 6 42 42 H 1.09001 * 109.46955 * 300.00146 * 9 8 7 43 43 H 1.09009 * 109.47216 * 60.00005 * 9 8 7 44 44 H 0.97008 * 119.99756 * 0.02562 * 12 10 9 45 45 H 0.96995 * 120.00310 * 179.97438 * 16 15 13 46 46 H 0.96997 * 120.00110 * 94.99637 * 21 2 1 47 47 H 1.07997 * 126.45361 * 359.97438 * 25 24 22 48 48 H 1.07993 * 126.06691 * 179.97438 * 26 25 24 49 49 H 1.08011 * 125.56054 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3351 -2.5624 7 6 5.5998 -1.2266 -2.6271 8 7 6.0894 -1.9191 -3.8266 9 6 7.5530 -1.8362 -3.9217 10 6 8.0175 -2.5565 -5.1612 11 8 7.2088 -3.0865 -5.8935 12 7 9.3314 -2.6111 -5.4565 13 6 9.7539 -3.2659 -6.5844 14 1 9.0339 -3.7386 -7.2361 15 6 11.1085 -3.3226 -6.8885 16 7 11.5136 -3.9508 -7.9694 17 14 12.3538 -2.5058 -5.7610 18 1 12.7989 -3.4767 -4.7292 19 1 13.5246 -2.0588 -6.5578 20 1 11.7281 -1.3326 -5.0997 21 7 2.0184 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8580 1.1627 2.4117 24 6 2.6354 -0.7098 3.5550 25 6 2.8159 -0.1506 4.8022 26 6 3.2926 -1.1627 5.6412 27 6 3.3932 -2.2971 4.9079 28 7 2.9923 -2.0365 3.6397 29 1 2.9631 -2.6778 2.9126 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3572 36 1 3.9995 -1.0728 -0.4259 37 1 3.7867 -2.3853 -2.5183 38 1 3.6405 -0.8760 -3.4504 39 1 5.8878 -0.1763 -2.6714 40 1 6.0346 -1.6856 -1.7392 41 1 5.6514 -1.5542 -4.6590 42 1 7.8549 -0.7901 -3.9743 43 1 8.0012 -2.3000 -3.0429 44 1 9.9781 -2.1869 -4.8710 45 1 12.4591 -3.9900 -8.1819 46 1 2.2490 -1.6317 1.1527 47 1 2.6252 0.8757 5.0790 48 1 3.5379 -1.0581 6.6877 49 1 3.7332 -3.2543 5.2751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169120414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:28 Heat of formation + Delta-G solvation = -41.631256 kcal Electronic energy + Delta-G solvation = -27352.532176 eV Core-core repulsion = 23314.680359 eV Total energy + Delta-G solvation = -4037.851817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69465 -39.74697 -38.52626 -37.30803 -35.98800 -34.06731 -33.50322 -31.95746 -31.65588 -31.22055 -29.39613 -28.77195 -26.36942 -24.35350 -23.63292 -22.53877 -21.43979 -21.33243 -20.81279 -20.50226 -19.40226 -19.34391 -18.32904 -16.86351 -16.30703 -16.04913 -15.88978 -15.58960 -15.15861 -14.84055 -14.60826 -14.45061 -14.29742 -14.14524 -13.99151 -13.73072 -13.47500 -13.23094 -13.11618 -13.01641 -12.75168 -12.55942 -12.48152 -12.45067 -12.05777 -11.83925 -11.66278 -11.49042 -11.22098 -11.17023 -10.91701 -10.77685 -10.60792 -10.46425 -9.98931 -9.59006 -9.58780 -9.46046 -8.68312 -8.60641 -8.20837 -8.14842 -6.32485 -3.83968 1.04485 2.32456 2.59644 2.70675 3.01302 3.01900 3.05669 3.13803 3.72582 3.96548 4.08929 4.30841 4.47409 4.55590 4.59320 4.61734 4.81710 4.91534 4.95369 4.97969 5.01395 5.09736 5.18097 5.22911 5.26635 5.40651 5.43090 5.53647 5.58461 5.61857 5.63064 5.67447 5.73348 5.75834 5.80988 5.83458 5.92034 6.00090 6.09025 6.15387 6.25043 6.46314 6.85456 7.06718 7.09535 7.56202 7.57947 7.76087 8.13083 8.58480 8.93519 9.41037 9.81366 10.80626 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.001638 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.761852 B =17084.760453 C =18449.576959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.565 6.565 12 N -0.591 5.591 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.880 3.120 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.270 1.270 21 N -0.725 5.725 22 C 0.590 3.410 23 O -0.529 6.529 24 C -0.060 4.060 25 C -0.106 4.106 26 C -0.213 4.213 27 C 0.025 3.975 28 N -0.540 5.540 29 H 0.416 0.584 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.393 0.607 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.116 6.565 26.088 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.447 6.447 12 N -0.230 5.230 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.195 1.195 21 N -0.377 5.377 22 C 0.378 3.622 23 O -0.405 6.405 24 C -0.173 4.173 25 C -0.133 4.133 26 C -0.237 4.237 27 C -0.111 4.111 28 N -0.137 5.137 29 H 0.253 0.747 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.227 0.773 47 H 0.165 0.835 48 H 0.162 0.838 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.715 6.312 25.586 32.911 hybrid contribution 1.527 0.635 0.239 1.671 sum -18.187 6.947 25.826 32.342 Atomic orbital electron populations 1.22187 0.95066 1.02200 1.02799 1.21062 0.94027 0.97741 0.83380 0.89050 1.21929 0.96342 1.01167 0.97081 1.21553 0.94604 1.01096 0.98271 1.21556 0.94858 1.01485 0.97597 1.21974 0.95124 0.95839 0.94134 1.60063 1.04580 1.60165 1.05505 1.21701 0.89438 0.98701 0.98653 1.19724 0.82936 0.85817 0.87998 1.90561 1.52997 1.49266 1.51865 1.42212 1.05999 1.50538 1.24274 1.19435 0.93505 1.30261 1.00227 0.86284 1.25041 0.96987 0.97462 0.96688 1.69620 1.16272 1.41728 1.24492 0.86667 0.81939 0.79751 0.80990 1.19588 1.20159 1.19545 1.46006 1.68078 1.13625 1.09946 1.17071 0.77293 0.86239 0.81596 1.90849 1.50450 1.14812 1.84409 1.20465 1.15328 0.84632 0.96871 1.21363 1.01216 0.99915 0.90760 1.20944 1.09547 0.92769 1.00455 1.22096 1.04372 1.00806 0.83870 1.42042 1.50969 1.09385 1.11262 0.74695 0.92026 0.91309 0.92471 0.91195 0.89897 0.91821 0.92098 0.90918 0.91843 0.95677 0.91376 0.83048 0.93827 0.89588 0.79689 0.91604 0.77310 0.83501 0.83823 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.69 16 2 C 0.14 0.95 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 4 C -0.13 -0.72 4.75 -26.73 -0.13 -0.85 16 5 C -0.12 -0.82 5.10 -26.73 -0.14 -0.96 16 6 C -0.12 -1.05 5.47 -26.73 -0.15 -1.20 16 7 C 0.06 0.66 5.69 -3.83 -0.02 0.64 16 8 N -0.67 -10.32 6.12 -115.06 -0.70 -11.03 16 9 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 10 C 0.45 10.28 7.82 -10.99 -0.09 10.20 16 11 O -0.57 -15.27 15.78 5.55 0.09 -15.18 16 12 N -0.59 -14.16 5.09 -10.97 -0.06 -14.22 16 13 C -0.31 -8.69 10.16 -14.94 -0.15 -8.84 16 14 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 17 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 21 N -0.73 -4.71 4.53 -55.11 -0.25 -4.96 16 22 C 0.59 5.60 7.75 -12.85 -0.10 5.50 16 23 O -0.53 -6.97 16.55 5.19 0.09 -6.89 16 24 C -0.06 -0.50 7.06 -81.98 -0.58 -1.08 16 25 C -0.11 -0.91 10.65 -39.12 -0.42 -1.33 16 26 C -0.21 -1.41 10.81 -39.98 -0.43 -1.84 16 27 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 28 N -0.54 -2.78 5.99 -9.39 -0.06 -2.83 16 29 H 0.42 0.94 8.19 -40.82 -0.33 0.60 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.29 8.14 -51.92 -0.42 0.86 16 44 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.39 1.58 7.73 -40.82 -0.32 1.27 16 47 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 48 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.17 0.32 8.06 -52.48 -0.42 -0.11 16 LS Contribution 410.39 15.07 6.18 6.18 Total: -1.00 -36.24 410.39 -8.90 -45.15 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.91 Total: 12.03 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.35 Total: 2.05 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.29 Total: -58.02 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.06 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.24 -8.90 -45.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169120414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.516 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds