Wall clock time and date at job start Tue Mar 31 2020 20:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.52996 * 109.46894 * 175.00377 * 4 2 1 6 6 C 1.53000 * 109.47246 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47427 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47072 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00073 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47352 * 179.97438 * 9 8 7 11 11 O 1.21293 * 119.99922 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00439 * 179.97438 * 10 9 8 13 13 C 1.37093 * 120.00607 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00300 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00248 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99887 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46974 * 90.00446 * 17 15 13 19 19 H 1.48500 * 109.47335 * 210.00173 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00409 * 17 15 13 21 21 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 22 22 C 1.34779 * 119.99741 * 275.00368 * 21 2 1 23 23 O 1.21694 * 120.00441 * 359.97438 * 22 21 2 24 24 C 1.46681 * 119.99801 * 179.97438 * 22 21 2 25 25 C 1.37874 * 126.23562 * 179.97438 * 24 22 21 26 26 C 1.39835 * 107.08817 * 179.97438 * 25 24 22 27 27 C 1.35453 * 107.86012 * 0.02562 * 26 25 24 28 28 N 1.35535 * 108.87743 * 359.76660 * 27 26 25 29 29 H 0.96994 * 125.67857 * 180.26133 * 28 27 26 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 34 34 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 35 35 H 1.09001 * 109.46995 * 299.99751 * 5 4 2 36 36 H 1.08998 * 109.47867 * 60.00073 * 5 4 2 37 37 H 1.09001 * 109.46952 * 299.99816 * 6 5 4 38 38 H 1.09004 * 109.47403 * 59.99668 * 6 5 4 39 39 H 1.09001 * 109.47187 * 300.00018 * 7 6 5 40 40 H 1.09003 * 109.46799 * 60.00212 * 7 6 5 41 41 H 1.00895 * 111.00290 * 56.04672 * 8 7 6 42 42 H 1.09001 * 109.46955 * 300.00146 * 9 8 7 43 43 H 1.09009 * 109.47216 * 60.00005 * 9 8 7 44 44 H 0.97008 * 119.99756 * 0.02562 * 12 10 9 45 45 H 0.96995 * 120.00310 * 179.97438 * 16 15 13 46 46 H 0.96997 * 120.00110 * 94.99637 * 21 2 1 47 47 H 1.07997 * 126.45361 * 359.97438 * 25 24 22 48 48 H 1.07993 * 126.06691 * 179.97438 * 26 25 24 49 49 H 1.08011 * 125.56054 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3351 -2.5624 7 6 5.5998 -1.2266 -2.6271 8 7 6.0894 -1.9191 -3.8266 9 6 7.5530 -1.8362 -3.9217 10 6 8.0175 -2.5565 -5.1612 11 8 7.2088 -3.0865 -5.8935 12 7 9.3314 -2.6111 -5.4565 13 6 9.7539 -3.2659 -6.5844 14 1 9.0339 -3.7386 -7.2361 15 6 11.1085 -3.3226 -6.8885 16 7 11.5136 -3.9508 -7.9694 17 14 12.3538 -2.5058 -5.7610 18 1 12.7989 -3.4767 -4.7292 19 1 13.5246 -2.0588 -6.5578 20 1 11.7281 -1.3326 -5.0997 21 7 2.0184 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8580 1.1627 2.4117 24 6 2.6354 -0.7098 3.5550 25 6 2.8159 -0.1506 4.8022 26 6 3.2926 -1.1627 5.6412 27 6 3.3932 -2.2971 4.9079 28 7 2.9923 -2.0365 3.6397 29 1 2.9631 -2.6778 2.9126 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3572 36 1 3.9995 -1.0728 -0.4259 37 1 3.7867 -2.3853 -2.5183 38 1 3.6405 -0.8760 -3.4504 39 1 5.8878 -0.1763 -2.6714 40 1 6.0346 -1.6856 -1.7392 41 1 5.6514 -1.5542 -4.6590 42 1 7.8549 -0.7901 -3.9743 43 1 8.0012 -2.3000 -3.0429 44 1 9.9781 -2.1869 -4.8710 45 1 12.4591 -3.9900 -8.1819 46 1 2.2490 -1.6317 1.1527 47 1 2.6252 0.8757 5.0790 48 1 3.5379 -1.0581 6.6877 49 1 3.7332 -3.2543 5.2751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169120414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:27 Heat of formation + Delta-G solvation = -70.245326 kcal Electronic energy + Delta-G solvation = -27353.772976 eV Core-core repulsion = 23314.680359 eV Total energy + Delta-G solvation = -4039.092616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20585 -40.39455 -40.30716 -38.08814 -36.99724 -35.96938 -34.42493 -33.75210 -32.57695 -31.77684 -30.02298 -29.63474 -27.72708 -25.72949 -24.48693 -23.40823 -22.09554 -21.94761 -21.36363 -21.26862 -21.03276 -20.24946 -19.89992 -17.81918 -17.50137 -17.16986 -16.75081 -16.62944 -16.25340 -15.95685 -15.78019 -15.43387 -15.11322 -15.01208 -14.78252 -14.66609 -14.55341 -14.46134 -14.24093 -13.89206 -13.70883 -13.52245 -13.40008 -13.23053 -13.09653 -13.00340 -12.81444 -12.42640 -12.35127 -12.19971 -11.99397 -11.85647 -11.61721 -11.52970 -11.43782 -11.20213 -10.46077 -10.26433 -10.23220 -9.95343 -9.34023 -9.18100 -8.42598 -6.03774 0.46086 1.29514 1.34780 1.43810 1.84284 1.93314 2.05834 2.21936 2.26905 2.36718 2.71367 3.13403 3.37216 3.71332 3.91509 3.99636 4.01890 4.14196 4.27275 4.30042 4.34288 4.41820 4.42232 4.45603 4.52152 4.53857 4.60214 4.70754 4.76805 4.85476 4.91250 4.96880 5.02862 5.11818 5.17981 5.27183 5.28633 5.33926 5.46580 5.51133 5.52456 5.74777 5.89733 5.93150 6.05768 6.38434 6.44000 6.58232 6.61784 6.86267 7.12878 7.37855 7.94173 8.74961 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.001638 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.761852 B =17084.760453 C =18449.576959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.110 4.110 7 C 0.060 3.940 8 N -0.689 5.689 9 C 0.061 3.939 10 C 0.447 3.553 11 O -0.615 6.615 12 N -0.591 5.591 13 C -0.331 4.331 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.232 1.232 21 N -0.710 5.710 22 C 0.588 3.412 23 O -0.577 6.577 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.232 4.232 27 C 0.044 3.956 28 N -0.527 5.527 29 H 0.431 0.569 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.343 0.657 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.408 0.592 47 H 0.133 0.867 48 H 0.158 0.842 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 6.586 28.880 34.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.321 5.321 9 C -0.071 4.071 10 C 0.235 3.765 11 O -0.499 6.499 12 N -0.232 5.232 13 C -0.460 4.460 14 H 0.073 0.927 15 C -0.214 4.214 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.156 1.156 21 N -0.361 5.361 22 C 0.377 3.623 23 O -0.457 6.457 24 C -0.195 4.195 25 C -0.158 4.158 26 C -0.255 4.255 27 C -0.094 4.094 28 N -0.124 5.124 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.131 0.869 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.244 0.756 47 H 0.151 0.849 48 H 0.175 0.825 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -18.798 6.302 28.378 34.617 hybrid contribution 1.134 0.535 -0.671 1.422 sum -17.664 6.837 27.706 33.562 Atomic orbital electron populations 1.22142 0.94666 1.02802 1.02202 1.21027 0.94301 0.96917 0.83835 0.91209 1.21855 0.95363 1.01892 0.96474 1.21470 0.95392 1.00434 0.97464 1.21489 0.93484 1.01457 0.98379 1.22084 0.96360 0.95968 0.92472 1.60098 1.03807 1.61576 1.06641 1.21631 0.90472 0.99414 0.95583 1.21008 0.82016 0.84389 0.89080 1.90538 1.54263 1.51073 1.54031 1.42040 1.07061 1.50716 1.23404 1.19015 0.93221 1.32066 1.01686 0.92667 1.26126 0.99098 0.97607 0.98536 1.69801 1.17310 1.43259 1.27002 0.85358 0.77852 0.79777 0.78485 1.18047 1.19977 1.15559 1.45879 1.66985 1.14173 1.09087 1.17292 0.76776 0.85773 0.82506 1.90815 1.52812 1.16897 1.85224 1.20270 1.16917 0.86077 0.96276 1.21521 1.02257 1.00157 0.91893 1.21213 1.10134 0.92858 1.01296 1.22711 1.01883 1.01619 0.83140 1.42018 1.49926 1.08407 1.12033 0.72925 0.94233 0.90332 0.91197 0.89731 0.89353 0.92446 0.91554 0.91302 0.92122 0.94758 0.90417 0.83835 0.90873 0.86878 0.77463 0.91102 0.75601 0.84882 0.82470 0.77263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.14 1.79 2.57 44.99 0.12 1.91 16 3 H 0.07 1.22 7.58 -2.39 -0.02 1.20 16 4 C -0.12 -1.08 4.75 30.59 0.15 -0.94 16 5 C -0.11 -1.28 5.10 30.59 0.16 -1.12 16 6 C -0.11 -1.72 5.47 30.59 0.17 -1.55 16 7 C 0.06 1.16 5.69 86.30 0.49 1.65 16 8 N -0.69 -19.75 6.12 -517.93 -3.17 -22.92 16 9 C 0.06 1.86 6.17 85.55 0.53 2.39 16 10 C 0.45 20.22 7.82 87.65 0.69 20.90 16 11 O -0.61 -34.17 15.78 -3.07 -0.05 -34.22 16 12 N -0.59 -27.87 5.09 -306.99 -1.56 -29.43 16 13 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 14 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 15 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 16 N -0.93 -56.17 13.96 21.66 0.30 -55.86 16 17 Si 0.97 38.57 27.74 68.60 1.90 40.47 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 21 N -0.71 -8.44 4.53 -446.49 -2.02 -10.46 16 22 C 0.59 11.25 7.75 86.45 0.67 11.92 16 23 O -0.58 -16.12 16.55 -4.33 -0.07 -16.19 16 24 C -0.08 -1.33 7.06 40.35 0.28 -1.04 16 25 C -0.13 -2.31 10.65 22.57 0.24 -2.07 16 26 C -0.23 -2.74 10.81 22.01 0.24 -2.50 16 27 C 0.04 0.30 11.89 83.48 0.99 1.30 16 28 N -0.53 -4.18 5.99 -183.61 -1.10 -5.28 16 29 H 0.43 0.61 8.19 -92.71 -0.76 -0.15 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.72 7.75 -2.39 -0.02 0.70 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.34 10.59 8.43 -89.70 -0.76 9.83 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.11 2.88 8.14 -2.38 -0.02 2.87 16 44 H 0.39 15.16 5.76 -92.70 -0.53 14.63 16 45 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.41 2.36 7.73 -92.71 -0.72 1.64 16 47 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 48 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 49 H 0.21 -0.22 8.06 -2.90 -0.02 -0.24 16 Total: -1.00 -85.97 410.39 -0.89 -86.86 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -1.84 Total: 36.35 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.72 Total: 10.69 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -7.55 Total: -123.97 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.12 Total: -50.41 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -85.97 -0.89 -86.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169120414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.611 kcal (2) G-P(sol) polarization free energy of solvation -85.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds