Wall clock time and date at job start Tue Mar 31 2020 20:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.52995 * 109.47337 * 120.00296 * 2 1 3 5 5 C 1.53003 * 109.46975 * 184.99624 * 4 2 1 6 6 C 1.53006 * 109.47133 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46924 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46657 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00135 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47639 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99648 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00265 * 180.02562 * 10 9 8 13 13 C 1.37092 * 119.99840 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00353 * 359.97438 * 13 12 10 15 15 C 1.38946 * 119.99523 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99761 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00577 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47228 * 90.00092 * 17 15 13 19 19 H 1.48499 * 109.47588 * 210.00627 * 17 15 13 20 20 H 1.48499 * 109.47012 * 330.00723 * 17 15 13 21 21 N 1.46499 * 109.47145 * 240.00647 * 2 1 3 22 22 C 1.34771 * 120.00560 * 84.99283 * 21 2 1 23 23 O 1.21703 * 119.99659 * 0.02562 * 22 21 2 24 24 C 1.46677 * 120.00516 * 180.27605 * 22 21 2 25 25 C 1.37868 * 126.23375 * 179.41606 * 24 22 21 26 26 C 1.39840 * 107.08721 * 179.88502 * 25 24 22 27 27 C 1.35459 * 107.86169 * 0.38277 * 26 25 24 28 28 N 1.35536 * 108.87014 * 359.76299 * 27 26 25 29 29 H 0.97002 * 125.67611 * 180.02562 * 28 27 26 30 30 H 1.09007 * 109.46732 * 299.99449 * 1 2 3 31 31 H 1.08995 * 109.47315 * 59.99836 * 1 2 3 32 32 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47218 * 304.99874 * 4 2 1 34 34 H 1.09000 * 109.47293 * 65.00040 * 4 2 1 35 35 H 1.09001 * 109.47875 * 300.00200 * 5 4 2 36 36 H 1.09005 * 109.47111 * 60.00748 * 5 4 2 37 37 H 1.09000 * 109.47390 * 300.00452 * 6 5 4 38 38 H 1.09000 * 109.46571 * 60.00893 * 6 5 4 39 39 H 1.09000 * 109.47193 * 300.00250 * 7 6 5 40 40 H 1.08991 * 109.47284 * 60.00895 * 7 6 5 41 41 H 1.00901 * 111.00424 * 56.05146 * 8 7 6 42 42 H 1.09003 * 109.46995 * 300.00289 * 9 8 7 43 43 H 1.09003 * 109.46854 * 59.99562 * 9 8 7 44 44 H 0.96997 * 119.99622 * 359.97438 * 12 10 9 45 45 H 0.97003 * 120.00189 * 179.97438 * 16 15 13 46 46 H 0.97000 * 120.00069 * 265.00013 * 21 2 1 47 47 H 1.08002 * 126.46052 * 0.02562 * 25 24 22 48 48 H 1.08000 * 126.07105 * 180.14430 * 26 25 24 49 49 H 1.07998 * 125.56269 * 179.76098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3341 2.5630 7 6 5.5997 -1.2256 2.6276 8 7 6.0894 -1.9182 3.8270 9 6 7.5530 -1.8352 3.9222 10 6 8.0175 -2.5546 5.1623 11 8 7.2087 -3.0839 5.8950 12 7 9.3313 -2.6089 5.4577 13 6 9.7538 -3.2637 6.5855 14 1 9.0338 -3.7358 7.2376 15 6 11.1083 -3.3192 6.8903 16 7 11.5133 -3.9466 7.9717 17 14 12.3537 -2.5022 5.7630 18 1 12.5676 -1.0981 6.1966 19 1 13.6398 -3.2417 5.8275 20 1 11.8435 -2.5172 4.3684 21 7 2.0183 -0.6905 -1.1962 22 6 2.1469 -0.0182 -2.3572 23 8 1.8578 1.1628 -2.4117 24 6 2.6301 -0.7109 -3.5563 25 6 2.7989 -0.1546 -4.8065 26 6 3.2777 -1.1661 -5.6450 27 6 3.3824 -2.2997 -4.9109 28 7 2.9919 -2.0364 -3.6400 29 1 2.9712 -2.6756 -2.9106 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.9995 -1.0728 0.4257 36 1 3.8533 0.4369 1.3573 37 1 3.6403 -0.8743 3.4506 38 1 3.7866 -2.3844 2.5197 39 1 6.0346 -1.6852 1.7401 40 1 5.8877 -0.1753 2.6712 41 1 5.7804 -2.8786 3.8416 42 1 8.0011 -2.2989 3.0434 43 1 7.8549 -0.7891 3.9748 44 1 9.9780 -2.1852 4.8718 45 1 12.4589 -3.9857 8.1843 46 1 2.2490 -1.6316 -1.1528 47 1 2.6010 0.8699 -5.0851 48 1 3.5174 -1.0629 -6.6930 49 1 3.7217 -3.2569 -5.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169120417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:33 Heat of formation + Delta-G solvation = -41.475962 kcal Electronic energy + Delta-G solvation = -27354.700870 eV Core-core repulsion = 23316.855787 eV Total energy + Delta-G solvation = -4037.845083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.70904 -39.75468 -38.52795 -37.31049 -35.99228 -34.06884 -33.50744 -31.96520 -31.65629 -31.23258 -29.40855 -28.77333 -26.37077 -24.35664 -23.63892 -22.54507 -21.44755 -21.33469 -20.82206 -20.51712 -19.41237 -19.34904 -18.32907 -16.85238 -16.29504 -16.14558 -15.87222 -15.59107 -15.09220 -14.83774 -14.62646 -14.44390 -14.34342 -14.16129 -13.99885 -13.79937 -13.42369 -13.21295 -13.10312 -13.06890 -12.76882 -12.55960 -12.48800 -12.38400 -12.05884 -11.91174 -11.64152 -11.45775 -11.26633 -11.16031 -10.90191 -10.78055 -10.60895 -10.47093 -9.98988 -9.59707 -9.58780 -9.47523 -8.69799 -8.60714 -8.20831 -8.14919 -6.32509 -3.83989 1.03142 2.30981 2.58075 2.69452 3.00851 3.01031 3.05926 3.13809 3.72486 3.96402 4.08927 4.30146 4.46240 4.55397 4.59512 4.60294 4.84415 4.89248 4.90338 4.97927 5.00612 5.13592 5.16374 5.21454 5.27276 5.40712 5.44382 5.50614 5.59210 5.61056 5.61843 5.67115 5.72790 5.75354 5.80675 5.83505 5.92327 6.00370 6.09493 6.15642 6.23619 6.44877 6.83746 7.05484 7.09403 7.56077 7.57790 7.75224 8.13046 8.58465 8.93485 9.41014 9.81335 10.80586 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.001637 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.507455 B =17098.268788 C =18452.566247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.565 6.565 12 N -0.591 5.591 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.880 3.120 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.270 1.270 21 N -0.725 5.725 22 C 0.590 3.410 23 O -0.528 6.528 24 C -0.060 4.060 25 C -0.106 4.106 26 C -0.213 4.213 27 C 0.024 3.976 28 N -0.541 5.541 29 H 0.416 0.584 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.349 0.651 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.393 0.607 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 5.116 -26.998 33.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.302 5.302 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.447 6.447 12 N -0.230 5.230 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.196 1.196 21 N -0.377 5.377 22 C 0.378 3.622 23 O -0.405 6.405 24 C -0.173 4.173 25 C -0.132 4.132 26 C -0.237 4.237 27 C -0.112 4.112 28 N -0.137 5.137 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.169 0.831 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.226 0.774 47 H 0.165 0.835 48 H 0.162 0.838 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.694 6.020 -25.784 32.999 hybrid contribution 1.682 -0.917 -1.196 2.258 sum -18.012 5.103 -26.980 32.839 Atomic orbital electron populations 1.22184 0.95054 1.02176 1.02830 1.21067 0.94036 0.97784 0.83337 0.88986 1.21931 0.96357 1.01066 0.97157 1.21558 0.94588 1.01350 0.98031 1.21559 0.95048 1.00748 0.98143 1.21979 0.94909 0.99500 0.90662 1.60065 1.09389 1.21817 1.38966 1.21706 0.88909 1.01256 0.96625 1.19724 0.82872 0.85610 0.88274 1.90561 1.52926 1.49377 1.51817 1.42209 1.05963 1.50654 1.24194 1.19434 0.93513 1.30470 1.00009 0.86282 1.25043 0.96994 0.97457 0.96694 1.69625 1.16289 1.41704 1.24493 0.86663 0.81887 0.80263 0.80510 1.19559 1.20173 1.19571 1.46006 1.68083 1.13580 1.09989 1.17071 0.77305 0.86254 0.81597 1.90853 1.50370 1.14804 1.84425 1.20468 1.15296 0.84713 0.96792 1.21368 1.01187 0.99949 0.90733 1.20950 1.09490 0.92778 1.00467 1.22092 1.04524 1.00783 0.83794 1.42040 1.51157 1.09481 1.11017 0.74740 0.91255 0.92033 0.92510 0.89757 0.91334 0.92338 0.91573 0.90689 0.92069 0.95886 0.91179 0.83149 0.93903 0.89513 0.79687 0.91608 0.77381 0.83476 0.83812 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.69 16 2 C 0.14 0.95 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.79 7.58 -51.93 -0.39 0.40 16 4 C -0.13 -0.72 4.75 -26.73 -0.13 -0.85 16 5 C -0.12 -0.82 5.10 -26.73 -0.14 -0.96 16 6 C -0.12 -1.05 5.47 -26.73 -0.15 -1.20 16 7 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 8 N -0.67 -10.32 6.13 -115.06 -0.70 -11.03 16 9 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 10 C 0.45 10.28 7.82 -10.99 -0.09 10.20 16 11 O -0.56 -15.27 15.78 5.55 0.09 -15.18 16 12 N -0.59 -14.16 5.09 -10.97 -0.06 -14.22 16 13 C -0.31 -8.69 10.16 -14.94 -0.15 -8.84 16 14 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 17 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.41 6.52 56.52 0.37 -5.05 16 21 N -0.73 -4.66 4.53 -55.12 -0.25 -4.91 16 22 C 0.59 5.56 7.75 -12.86 -0.10 5.46 16 23 O -0.53 -6.95 16.55 5.19 0.09 -6.86 16 24 C -0.06 -0.49 7.06 -81.98 -0.58 -1.07 16 25 C -0.11 -0.90 10.65 -39.12 -0.42 -1.32 16 26 C -0.21 -1.39 10.81 -39.97 -0.43 -1.82 16 27 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 28 N -0.54 -2.72 5.99 -9.39 -0.06 -2.78 16 29 H 0.42 0.88 8.19 -40.82 -0.33 0.54 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 7.75 -51.93 -0.40 -0.01 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.51 8.43 -39.29 -0.33 5.18 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.39 1.53 7.73 -40.82 -0.32 1.22 16 47 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 48 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.17 0.30 8.06 -52.49 -0.42 -0.13 16 LS Contribution 410.38 15.07 6.18 6.18 Total: -1.00 -36.30 410.38 -8.91 -45.20 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.91 Total: 11.85 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.35 Total: 2.05 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.29 Total: -57.91 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.17 Total: -22.05 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.30 -8.91 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169120417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds