Wall clock time and date at job start Tue Mar 31 2020 20:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.52995 * 109.47337 * 120.00296 * 2 1 3 5 5 C 1.53003 * 109.46975 * 184.99624 * 4 2 1 6 6 C 1.53006 * 109.47133 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46924 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46657 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00135 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47639 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99648 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00265 * 180.02562 * 10 9 8 13 13 C 1.37092 * 119.99840 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00353 * 359.97438 * 13 12 10 15 15 C 1.38946 * 119.99523 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99761 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00577 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47228 * 90.00092 * 17 15 13 19 19 H 1.48499 * 109.47588 * 210.00627 * 17 15 13 20 20 H 1.48499 * 109.47012 * 330.00723 * 17 15 13 21 21 N 1.46499 * 109.47145 * 240.00647 * 2 1 3 22 22 C 1.34771 * 120.00560 * 84.99283 * 21 2 1 23 23 O 1.21703 * 119.99659 * 0.02562 * 22 21 2 24 24 C 1.46677 * 120.00516 * 180.27605 * 22 21 2 25 25 C 1.37868 * 126.23375 * 179.41606 * 24 22 21 26 26 C 1.39840 * 107.08721 * 179.88502 * 25 24 22 27 27 C 1.35459 * 107.86169 * 0.38277 * 26 25 24 28 28 N 1.35536 * 108.87014 * 359.76299 * 27 26 25 29 29 H 0.97002 * 125.67611 * 180.02562 * 28 27 26 30 30 H 1.09007 * 109.46732 * 299.99449 * 1 2 3 31 31 H 1.08995 * 109.47315 * 59.99836 * 1 2 3 32 32 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47218 * 304.99874 * 4 2 1 34 34 H 1.09000 * 109.47293 * 65.00040 * 4 2 1 35 35 H 1.09001 * 109.47875 * 300.00200 * 5 4 2 36 36 H 1.09005 * 109.47111 * 60.00748 * 5 4 2 37 37 H 1.09000 * 109.47390 * 300.00452 * 6 5 4 38 38 H 1.09000 * 109.46571 * 60.00893 * 6 5 4 39 39 H 1.09000 * 109.47193 * 300.00250 * 7 6 5 40 40 H 1.08991 * 109.47284 * 60.00895 * 7 6 5 41 41 H 1.00901 * 111.00424 * 56.05146 * 8 7 6 42 42 H 1.09003 * 109.46995 * 300.00289 * 9 8 7 43 43 H 1.09003 * 109.46854 * 59.99562 * 9 8 7 44 44 H 0.96997 * 119.99622 * 359.97438 * 12 10 9 45 45 H 0.97003 * 120.00189 * 179.97438 * 16 15 13 46 46 H 0.97000 * 120.00069 * 265.00013 * 21 2 1 47 47 H 1.08002 * 126.46052 * 0.02562 * 25 24 22 48 48 H 1.08000 * 126.07105 * 180.14430 * 26 25 24 49 49 H 1.07998 * 125.56269 * 179.76098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3341 2.5630 7 6 5.5997 -1.2256 2.6276 8 7 6.0894 -1.9182 3.8270 9 6 7.5530 -1.8352 3.9222 10 6 8.0175 -2.5546 5.1623 11 8 7.2087 -3.0839 5.8950 12 7 9.3313 -2.6089 5.4577 13 6 9.7538 -3.2637 6.5855 14 1 9.0338 -3.7358 7.2376 15 6 11.1083 -3.3192 6.8903 16 7 11.5133 -3.9466 7.9717 17 14 12.3537 -2.5022 5.7630 18 1 12.5676 -1.0981 6.1966 19 1 13.6398 -3.2417 5.8275 20 1 11.8435 -2.5172 4.3684 21 7 2.0183 -0.6905 -1.1962 22 6 2.1469 -0.0182 -2.3572 23 8 1.8578 1.1628 -2.4117 24 6 2.6301 -0.7109 -3.5563 25 6 2.7989 -0.1546 -4.8065 26 6 3.2777 -1.1661 -5.6450 27 6 3.3824 -2.2997 -4.9109 28 7 2.9919 -2.0364 -3.6400 29 1 2.9712 -2.6756 -2.9106 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.9995 -1.0728 0.4257 36 1 3.8533 0.4369 1.3573 37 1 3.6403 -0.8743 3.4506 38 1 3.7866 -2.3844 2.5197 39 1 6.0346 -1.6852 1.7401 40 1 5.8877 -0.1753 2.6712 41 1 5.7804 -2.8786 3.8416 42 1 8.0011 -2.2989 3.0434 43 1 7.8549 -0.7891 3.9748 44 1 9.9780 -2.1852 4.8718 45 1 12.4589 -3.9857 8.1843 46 1 2.2490 -1.6316 -1.1528 47 1 2.6010 0.8699 -5.0851 48 1 3.5174 -1.0629 -6.6930 49 1 3.7217 -3.2569 -5.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169120417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:32 Heat of formation + Delta-G solvation = -70.185743 kcal Electronic energy + Delta-G solvation = -27355.945820 eV Core-core repulsion = 23316.855787 eV Total energy + Delta-G solvation = -4039.090033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21187 -40.39748 -40.30831 -38.08967 -37.00048 -35.96987 -34.42735 -33.75143 -32.58069 -31.78294 -30.02620 -29.63723 -27.72826 -25.73024 -24.49025 -23.41430 -22.09681 -21.95082 -21.36891 -21.26998 -21.03927 -20.25062 -19.90638 -17.80893 -17.49082 -17.20183 -16.76073 -16.63424 -16.26367 -15.92836 -15.77609 -15.38074 -15.15634 -14.93519 -14.85700 -14.74917 -14.57624 -14.43708 -14.22801 -13.86689 -13.62701 -13.61620 -13.38823 -13.23245 -13.09536 -12.98440 -12.82193 -12.42598 -12.40629 -12.15419 -11.99040 -11.89208 -11.58284 -11.53283 -11.44986 -11.20413 -10.46091 -10.26413 -10.23541 -9.95915 -9.33006 -9.18719 -8.42594 -6.03773 0.45535 1.29290 1.35060 1.43775 1.83644 1.93289 2.05214 2.21980 2.26202 2.36284 2.71422 3.13456 3.37384 3.70975 3.90816 4.00060 4.04348 4.12774 4.23391 4.31606 4.33619 4.40974 4.41366 4.47531 4.53120 4.53955 4.59769 4.70821 4.76068 4.83107 4.91553 4.97013 5.04312 5.11246 5.17507 5.26761 5.28111 5.35168 5.46943 5.51097 5.52167 5.74132 5.89788 5.92448 6.05983 6.40581 6.43594 6.58291 6.61253 6.86255 7.12669 7.37874 7.94192 8.74947 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.001637 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.507455 B =17098.268788 C =18452.566247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.069 0.931 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.110 4.110 7 C 0.060 3.940 8 N -0.690 5.690 9 C 0.062 3.938 10 C 0.447 3.553 11 O -0.615 6.615 12 N -0.590 5.590 13 C -0.331 4.331 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.231 1.231 21 N -0.709 5.709 22 C 0.587 3.413 23 O -0.577 6.577 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.232 4.232 27 C 0.044 3.956 28 N -0.527 5.527 29 H 0.431 0.569 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.344 0.656 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.408 0.592 47 H 0.133 0.867 48 H 0.158 0.842 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 4.858 -29.945 35.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.323 5.323 9 C -0.071 4.071 10 C 0.235 3.765 11 O -0.499 6.499 12 N -0.232 5.232 13 C -0.460 4.460 14 H 0.073 0.927 15 C -0.214 4.214 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.154 1.154 21 N -0.361 5.361 22 C 0.376 3.624 23 O -0.457 6.457 24 C -0.195 4.195 25 C -0.158 4.158 26 C -0.255 4.255 27 C -0.093 4.093 28 N -0.124 5.124 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.244 0.756 47 H 0.151 0.849 48 H 0.175 0.825 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.754 5.732 -28.727 34.782 hybrid contribution 1.279 -0.919 -0.231 1.591 sum -17.475 4.814 -28.958 34.163 Atomic orbital electron populations 1.22139 0.94664 1.02809 1.02195 1.21023 0.94303 0.96933 0.83826 0.91238 1.21856 0.95370 1.01901 0.96449 1.21474 0.95385 1.00591 0.97313 1.21491 0.93617 1.01253 0.98455 1.22075 0.96148 0.99126 0.89503 1.60081 1.08626 1.21890 1.41696 1.21628 0.89991 1.01672 0.93793 1.21011 0.81947 0.84146 0.89392 1.90538 1.54192 1.51171 1.54002 1.42037 1.07029 1.50812 1.23342 1.19015 0.93226 1.32217 1.01520 0.92661 1.26128 0.99107 0.97586 0.98555 1.69806 1.17323 1.43265 1.26981 0.85356 0.77664 0.78950 0.79494 1.18235 1.19914 1.15445 1.45869 1.66984 1.14147 1.09090 1.17296 0.76780 0.85783 0.82519 1.90820 1.52753 1.16920 1.85247 1.20262 1.16911 0.86180 0.96159 1.21524 1.02240 1.00189 0.91884 1.21219 1.10099 0.92880 1.01309 1.22709 1.01985 1.01587 0.83066 1.42013 1.50084 1.08482 1.11805 0.72928 0.90361 0.94238 0.91166 0.89440 0.89646 0.91550 0.92441 0.91973 0.91450 0.94210 0.90960 0.83703 0.90621 0.87140 0.77462 0.91107 0.75607 0.84895 0.82477 0.77247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.14 1.79 2.57 44.99 0.12 1.91 16 3 H 0.07 1.22 7.58 -2.39 -0.02 1.21 16 4 C -0.12 -1.08 4.75 30.59 0.15 -0.93 16 5 C -0.11 -1.28 5.10 30.60 0.16 -1.12 16 6 C -0.11 -1.72 5.47 30.60 0.17 -1.55 16 7 C 0.06 1.17 5.69 86.30 0.49 1.66 16 8 N -0.69 -19.80 6.13 -517.93 -3.17 -22.97 16 9 C 0.06 1.87 6.17 85.56 0.53 2.40 16 10 C 0.45 20.21 7.82 87.66 0.69 20.90 16 11 O -0.61 -34.17 15.78 -3.07 -0.05 -34.22 16 12 N -0.59 -27.87 5.09 -306.99 -1.56 -29.43 16 13 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 14 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 15 C -0.02 -0.83 5.50 84.92 0.47 -0.37 16 16 N -0.93 -56.17 13.96 21.66 0.30 -55.87 16 17 Si 0.97 38.57 27.74 68.60 1.90 40.48 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 21 N -0.71 -8.28 4.53 -446.51 -2.02 -10.30 16 22 C 0.59 11.15 7.75 86.45 0.67 11.82 16 23 O -0.58 -16.10 16.55 -4.36 -0.07 -16.18 16 24 C -0.08 -1.30 7.06 40.35 0.28 -1.02 16 25 C -0.13 -2.29 10.65 22.57 0.24 -2.05 16 26 C -0.23 -2.69 10.81 22.01 0.24 -2.45 16 27 C 0.04 0.29 11.89 83.48 0.99 1.28 16 28 N -0.53 -3.99 5.99 -183.62 -1.10 -5.09 16 29 H 0.43 0.40 8.19 -92.71 -0.76 -0.36 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.69 7.75 -2.39 -0.02 0.67 16 36 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.34 10.37 8.43 -89.69 -0.76 9.61 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.39 15.16 5.76 -92.71 -0.53 14.63 16 45 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.41 2.18 7.73 -92.71 -0.72 1.46 16 47 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 48 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 49 H 0.21 -0.30 8.06 -2.91 -0.02 -0.32 16 Total: -1.00 -86.32 410.38 -0.89 -87.21 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -1.84 Total: 35.67 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.72 Total: 10.69 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -7.55 Total: -123.65 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.12 Total: -50.39 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.48 kcal Total: -86.32 -0.89 -87.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169120417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.026 kcal (2) G-P(sol) polarization free energy of solvation -86.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds