Wall clock time and date at job start Tue Mar 31 2020 20:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 C 1.53004 * 109.47475 * 185.00095 * 4 2 1 6 6 C 1.52994 * 109.47144 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46829 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47092 * 179.97438 * 7 6 5 9 9 C 1.46896 * 110.99993 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46919 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00177 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00029 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00438 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99388 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00141 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00321 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47211 * 89.99580 * 17 15 13 19 19 H 1.48499 * 109.47406 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.47049 * 329.99648 * 17 15 13 21 21 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 22 22 C 1.34773 * 120.00431 * 85.00044 * 21 2 1 23 23 O 1.21633 * 119.99868 * 359.97438 * 22 21 2 24 24 C 1.47265 * 120.00141 * 179.72637 * 22 21 2 25 25 C 1.46687 * 126.93890 * 359.95233 * 24 22 21 26 26 C 1.34483 * 106.32741 * 179.88941 * 25 24 22 27 27 N 1.36451 * 108.85786 * 0.38188 * 26 25 24 28 28 H 0.97006 * 124.84904 * 179.72673 * 27 26 25 29 29 C 1.34649 * 110.29842 * 359.74680 * 27 26 25 30 30 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 31 31 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 33 33 H 1.09000 * 109.47070 * 305.00048 * 4 2 1 34 34 H 1.08992 * 109.47139 * 64.99982 * 4 2 1 35 35 H 1.08996 * 109.46923 * 300.00526 * 5 4 2 36 36 H 1.09001 * 109.46769 * 59.99791 * 5 4 2 37 37 H 1.09000 * 109.47152 * 299.99800 * 6 5 4 38 38 H 1.08992 * 109.47387 * 59.99937 * 6 5 4 39 39 H 1.09000 * 109.47254 * 299.99938 * 7 6 5 40 40 H 1.09001 * 109.46661 * 60.00431 * 7 6 5 41 41 H 1.00900 * 110.99460 * 56.04429 * 8 7 6 42 42 H 1.08997 * 109.46934 * 300.00094 * 9 8 7 43 43 H 1.08998 * 109.47459 * 60.00166 * 9 8 7 44 44 H 0.97006 * 119.99809 * 359.97438 * 12 10 9 45 45 H 0.97003 * 120.00153 * 180.02562 * 16 15 13 46 46 H 0.97000 * 119.99456 * 264.99607 * 21 2 1 47 47 H 1.08001 * 126.83569 * 0.03990 * 25 24 22 48 48 H 1.08002 * 125.56964 * 180.12618 * 26 25 24 49 49 H 1.08006 * 125.80193 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5998 -1.2275 2.6267 8 7 6.0895 -1.9200 3.8261 9 6 7.5530 -1.8369 3.9213 10 6 8.0174 -2.5573 5.1609 11 8 7.2088 -3.0874 5.8932 12 7 9.3313 -2.6117 5.4563 13 6 9.7539 -3.2666 6.5842 14 1 9.0337 -3.7386 7.2362 15 6 11.1083 -3.3222 6.8889 16 7 11.9845 -2.7475 6.0958 17 14 11.6839 -4.2139 8.4261 18 1 11.9524 -5.6379 8.1011 19 1 12.9276 -3.5784 8.9307 20 1 10.6294 -4.1345 9.4686 21 7 2.0183 -0.6905 -1.1962 22 6 2.1470 -0.0182 -2.3571 23 8 1.8573 1.1618 -2.4119 24 6 2.6436 -0.7110 -3.5581 25 6 3.0408 -2.1192 -3.6625 26 6 3.4226 -2.3107 -4.9377 27 7 3.2990 -1.1336 -5.6167 28 1 3.5158 -1.0089 -6.5539 29 6 2.8335 -0.1698 -4.7997 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4260 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7865 -2.3852 2.5185 39 1 6.0341 -1.6869 1.7387 40 1 5.8884 -0.1773 2.6706 41 1 5.7797 -2.8801 3.8411 42 1 8.0011 -2.3006 3.0426 43 1 7.8550 -0.7909 3.9740 44 1 9.9780 -2.1875 4.8708 45 1 12.9301 -2.7867 6.3083 46 1 2.2490 -1.6317 -1.1526 47 1 3.0268 -2.8562 -2.8732 48 1 3.7739 -3.2429 -5.3551 49 1 2.6429 0.8563 -5.0776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170933937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:42 Heat of formation + Delta-G solvation = -49.862997 kcal Electronic energy + Delta-G solvation = -27228.714532 eV Core-core repulsion = 23190.505759 eV Total energy + Delta-G solvation = -4038.208772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49701 -39.58556 -38.28367 -37.07651 -35.76062 -33.94348 -33.27313 -31.96705 -31.18519 -30.53087 -29.48918 -28.57185 -26.14656 -24.37974 -23.71500 -22.42879 -21.27292 -21.16034 -20.68643 -19.92552 -19.18430 -19.14808 -17.84772 -16.59679 -16.34170 -16.10485 -15.72348 -15.25557 -14.85875 -14.55094 -14.51093 -14.33651 -14.23620 -14.05670 -13.94149 -13.66873 -13.46265 -13.42384 -13.09094 -13.00101 -12.53167 -12.36898 -12.18775 -12.14488 -11.70469 -11.53567 -11.41538 -11.25619 -11.08150 -10.99977 -10.70905 -10.59969 -10.37477 -10.19323 -10.08763 -9.48589 -9.37743 -9.17063 -8.77662 -8.41894 -7.99875 -7.92604 -6.39299 -3.80128 1.44525 2.01630 2.69603 3.18942 3.19527 3.27925 3.34250 3.34276 3.94183 4.10076 4.27638 4.49032 4.58384 4.70670 4.74038 4.80873 4.83830 5.00390 5.06509 5.15155 5.19438 5.27294 5.31576 5.37545 5.41578 5.47464 5.58149 5.59494 5.65395 5.69069 5.81273 5.83308 5.88523 5.92862 6.01643 6.04725 6.22754 6.27220 6.27786 6.34767 6.35999 6.47697 6.96948 7.29918 7.39930 7.57450 7.74072 8.09158 8.14472 8.64212 9.20382 9.57250 10.08946 10.78508 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.001537 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.227735 B =18217.945883 C =19482.079004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.116 4.116 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.583 6.583 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.719 5.719 22 C 0.592 3.408 23 O -0.556 6.556 24 C -0.237 4.237 25 C -0.170 4.170 26 C -0.017 4.017 27 N -0.554 5.554 28 H 0.418 0.582 29 C 0.075 3.925 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.399 0.601 47 H 0.145 0.855 48 H 0.169 0.831 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.317 3.430 -25.351 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.202 5.202 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.370 5.370 22 C 0.381 3.619 23 O -0.435 6.435 24 C -0.247 4.247 25 C -0.194 4.194 26 C -0.144 4.144 27 N -0.149 5.149 28 H 0.255 0.745 29 C -0.062 4.062 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.167 0.833 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.234 0.766 47 H 0.163 0.837 48 H 0.187 0.813 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.920 4.449 -24.551 31.927 hybrid contribution 1.394 -1.260 -0.759 2.027 sum -18.526 3.189 -25.310 31.527 Atomic orbital electron populations 1.22176 0.95416 1.02051 1.02496 1.20999 0.93794 0.97693 0.83781 0.89359 1.21912 0.96350 1.01068 0.97092 1.21551 0.94637 1.01196 0.98143 1.21552 0.95050 1.00715 0.98110 1.21980 0.94884 0.99455 0.90753 1.60071 1.09621 1.21699 1.38906 1.21666 0.88576 1.01212 0.96761 1.19846 0.83311 0.85835 0.88341 1.90517 1.53350 1.50554 1.52333 1.41871 1.05439 1.48969 1.23873 1.19712 0.91986 1.30139 1.01020 0.87920 1.25263 0.95629 0.97854 0.99262 1.69618 1.02489 1.44300 1.37987 0.85851 0.78129 0.79041 0.81222 1.20457 1.20936 1.19403 1.45869 1.67699 1.14003 1.09432 1.17377 0.76502 0.85718 0.82324 1.90769 1.51708 1.15744 1.85284 1.20402 1.15056 0.94982 0.94239 1.22073 1.05738 0.95042 0.96573 1.21825 1.08894 0.90445 0.93276 1.41677 1.51719 1.09011 1.12463 0.74509 1.21857 0.99803 0.94597 0.89911 0.92190 0.92542 0.91599 0.90108 0.91343 0.92000 0.91753 0.90901 0.92113 0.95813 0.91288 0.83319 0.94006 0.89667 0.77458 0.91906 0.76635 0.83713 0.81328 0.80610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.14 1.17 2.57 -67.93 -0.17 0.99 16 3 H 0.09 0.90 7.58 -51.92 -0.39 0.50 16 4 C -0.13 -0.90 4.75 -26.73 -0.13 -1.03 16 5 C -0.12 -1.00 5.10 -26.73 -0.14 -1.14 16 6 C -0.12 -1.21 5.47 -26.73 -0.15 -1.35 16 7 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 8 N -0.67 -11.27 6.13 -115.06 -0.70 -11.97 16 9 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 10 C 0.44 10.70 7.82 -10.98 -0.09 10.62 16 11 O -0.58 -16.20 15.78 5.54 0.09 -16.12 16 12 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 13 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 14 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 17 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 N -0.72 -5.94 4.53 -54.93 -0.25 -6.19 16 22 C 0.59 6.35 7.77 -12.59 -0.10 6.25 16 23 O -0.56 -7.84 16.58 5.25 0.09 -7.76 16 24 C -0.24 -2.09 6.29 -103.35 -0.65 -2.74 16 25 C -0.17 -1.15 10.56 -37.50 -0.40 -1.54 16 26 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 27 N -0.55 -2.45 5.90 -12.85 -0.08 -2.52 16 28 H 0.42 0.46 8.96 -40.82 -0.37 0.09 16 29 C 0.08 0.53 11.69 -16.85 -0.20 0.33 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.40 2.53 7.73 -40.82 -0.32 2.21 16 47 H 0.15 0.73 7.70 -52.49 -0.40 0.32 16 48 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 49 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 413.89 15.07 6.24 6.24 Total: -1.00 -35.83 413.89 -9.09 -44.92 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.96 Total: 13.27 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.15 Total: 2.69 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.36 Total: -59.47 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.17 Total: -23.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.83 -9.09 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170933937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.943 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds