Wall clock time and date at job start Tue Mar 31 2020 20:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 C 1.53004 * 109.47475 * 185.00095 * 4 2 1 6 6 C 1.52994 * 109.47144 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46829 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47092 * 179.97438 * 7 6 5 9 9 C 1.46896 * 110.99993 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46919 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00177 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00029 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00438 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99388 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00141 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00321 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47211 * 89.99580 * 17 15 13 19 19 H 1.48499 * 109.47406 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.47049 * 329.99648 * 17 15 13 21 21 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 22 22 C 1.34773 * 120.00431 * 85.00044 * 21 2 1 23 23 O 1.21633 * 119.99868 * 359.97438 * 22 21 2 24 24 C 1.47265 * 120.00141 * 179.72637 * 22 21 2 25 25 C 1.46687 * 126.93890 * 359.95233 * 24 22 21 26 26 C 1.34483 * 106.32741 * 179.88941 * 25 24 22 27 27 N 1.36451 * 108.85786 * 0.38188 * 26 25 24 28 28 H 0.97006 * 124.84904 * 179.72673 * 27 26 25 29 29 C 1.34649 * 110.29842 * 359.74680 * 27 26 25 30 30 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 31 31 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 33 33 H 1.09000 * 109.47070 * 305.00048 * 4 2 1 34 34 H 1.08992 * 109.47139 * 64.99982 * 4 2 1 35 35 H 1.08996 * 109.46923 * 300.00526 * 5 4 2 36 36 H 1.09001 * 109.46769 * 59.99791 * 5 4 2 37 37 H 1.09000 * 109.47152 * 299.99800 * 6 5 4 38 38 H 1.08992 * 109.47387 * 59.99937 * 6 5 4 39 39 H 1.09000 * 109.47254 * 299.99938 * 7 6 5 40 40 H 1.09001 * 109.46661 * 60.00431 * 7 6 5 41 41 H 1.00900 * 110.99460 * 56.04429 * 8 7 6 42 42 H 1.08997 * 109.46934 * 300.00094 * 9 8 7 43 43 H 1.08998 * 109.47459 * 60.00166 * 9 8 7 44 44 H 0.97006 * 119.99809 * 359.97438 * 12 10 9 45 45 H 0.97003 * 120.00153 * 180.02562 * 16 15 13 46 46 H 0.97000 * 119.99456 * 264.99607 * 21 2 1 47 47 H 1.08001 * 126.83569 * 0.03990 * 25 24 22 48 48 H 1.08002 * 125.56964 * 180.12618 * 26 25 24 49 49 H 1.08006 * 125.80193 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5998 -1.2275 2.6267 8 7 6.0895 -1.9200 3.8261 9 6 7.5530 -1.8369 3.9213 10 6 8.0174 -2.5573 5.1609 11 8 7.2088 -3.0874 5.8932 12 7 9.3313 -2.6117 5.4563 13 6 9.7539 -3.2666 6.5842 14 1 9.0337 -3.7386 7.2362 15 6 11.1083 -3.3222 6.8889 16 7 11.9845 -2.7475 6.0958 17 14 11.6839 -4.2139 8.4261 18 1 11.9524 -5.6379 8.1011 19 1 12.9276 -3.5784 8.9307 20 1 10.6294 -4.1345 9.4686 21 7 2.0183 -0.6905 -1.1962 22 6 2.1470 -0.0182 -2.3571 23 8 1.8573 1.1618 -2.4119 24 6 2.6436 -0.7110 -3.5581 25 6 3.0408 -2.1192 -3.6625 26 6 3.4226 -2.3107 -4.9377 27 7 3.2990 -1.1336 -5.6167 28 1 3.5158 -1.0089 -6.5539 29 6 2.8335 -0.1698 -4.7997 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4260 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7865 -2.3852 2.5185 39 1 6.0341 -1.6869 1.7387 40 1 5.8884 -0.1773 2.6706 41 1 5.7797 -2.8801 3.8411 42 1 8.0011 -2.3006 3.0426 43 1 7.8550 -0.7909 3.9740 44 1 9.9780 -2.1875 4.8708 45 1 12.9301 -2.7867 6.3083 46 1 2.2490 -1.6317 -1.1526 47 1 3.0268 -2.8562 -2.8732 48 1 3.7739 -3.2429 -5.3551 49 1 2.6429 0.8563 -5.0776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170933937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:41 Heat of formation + Delta-G solvation = -76.663963 kcal Electronic energy + Delta-G solvation = -27229.876709 eV Core-core repulsion = 23190.505759 eV Total energy + Delta-G solvation = -4039.370949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97224 -40.31646 -40.15221 -37.98996 -36.88733 -35.90372 -34.29082 -33.26544 -32.63908 -31.14548 -29.97571 -29.62557 -27.62740 -25.86585 -24.60101 -23.40541 -22.04892 -21.81415 -21.25764 -21.01605 -20.56357 -19.89881 -19.62166 -17.82364 -17.35921 -17.09006 -16.89109 -16.50594 -16.03574 -15.97333 -15.82545 -15.26324 -15.18488 -14.94302 -14.75503 -14.70717 -14.52756 -14.30684 -13.87436 -13.84512 -13.62052 -13.46813 -13.32505 -13.11425 -12.96019 -12.91162 -12.77587 -12.42267 -12.35134 -12.12174 -12.08201 -11.83332 -11.51637 -11.50564 -11.39610 -10.90795 -10.35313 -10.08218 -10.02089 -9.68629 -9.30935 -9.26159 -8.46730 -5.95885 0.82572 1.38518 1.42269 1.55442 1.58900 2.04362 2.22954 2.29575 2.64010 2.65742 2.93155 3.20290 3.51277 3.78716 4.02352 4.07410 4.09522 4.22190 4.26748 4.31894 4.38700 4.42208 4.47225 4.54391 4.55168 4.58682 4.64146 4.78069 4.80346 4.88771 4.96612 5.00546 5.02460 5.09194 5.19460 5.23108 5.33275 5.40766 5.42996 5.52160 5.67893 5.80400 5.90715 5.99130 6.12564 6.44553 6.59732 6.64655 6.76776 7.12046 7.41560 7.55457 8.10657 8.70682 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.001537 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.227735 B =18217.945883 C =19482.079004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.108 4.108 7 C 0.059 3.941 8 N -0.686 5.686 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.336 4.336 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.921 5.921 17 Si 0.995 3.005 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.273 1.273 21 N -0.708 5.708 22 C 0.585 3.415 23 O -0.601 6.601 24 C -0.271 4.271 25 C -0.187 4.187 26 C -0.009 4.009 27 N -0.540 5.540 28 H 0.435 0.565 29 C 0.069 3.931 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.410 0.590 47 H 0.158 0.842 48 H 0.201 0.799 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 2.270 -26.439 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.146 4.146 7 C -0.069 4.069 8 N -0.318 5.318 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.198 1.198 21 N -0.359 5.359 22 C 0.375 3.625 23 O -0.485 6.485 24 C -0.281 4.281 25 C -0.211 4.211 26 C -0.137 4.137 27 N -0.135 5.135 28 H 0.275 0.725 29 C -0.070 4.070 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.163 0.837 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.246 0.754 47 H 0.176 0.824 48 H 0.218 0.782 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.577 3.273 -25.680 32.457 hybrid contribution 1.276 -0.896 -0.489 1.634 sum -18.301 2.377 -26.169 32.022 Atomic orbital electron populations 1.22122 0.94841 1.02653 1.01979 1.20965 0.94215 0.96745 0.84270 0.91668 1.21834 0.95245 1.01841 0.96536 1.21461 0.95540 1.00421 0.97312 1.21475 0.93360 1.01280 0.98474 1.22077 0.96311 0.98987 0.89537 1.60086 1.08489 1.21816 1.41456 1.21531 0.89864 1.01202 0.94221 1.20888 0.82366 0.84841 0.89459 1.90483 1.54187 1.52119 1.54176 1.41943 1.06297 1.49207 1.23588 1.19691 0.92418 1.32075 1.02331 0.90264 1.26070 0.95138 0.98077 1.02055 1.69678 1.02939 1.44417 1.39108 0.84900 0.77696 0.78223 0.77336 1.19493 1.19532 1.19801 1.45801 1.66844 1.14397 1.08860 1.17777 0.75986 0.85327 0.83379 1.90731 1.53998 1.17677 1.86069 1.20496 1.16974 0.96421 0.94195 1.22313 1.06524 0.94273 0.97969 1.22354 1.07218 0.91341 0.92771 1.41710 1.50360 1.08347 1.13112 0.72539 1.22003 0.99647 0.95328 0.89988 0.94316 0.91306 0.90512 0.89526 0.89822 0.91673 0.92587 0.91831 0.91427 0.94522 0.91224 0.83706 0.91658 0.88142 0.76973 0.91270 0.75352 0.82439 0.78182 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.31 2.57 44.99 0.12 2.43 16 3 H 0.07 1.38 7.58 -2.38 -0.02 1.36 16 4 C -0.12 -1.49 4.75 30.59 0.15 -1.35 16 5 C -0.11 -1.71 5.10 30.59 0.16 -1.55 16 6 C -0.11 -2.06 5.47 30.59 0.17 -1.89 16 7 C 0.06 1.41 5.69 86.30 0.49 1.90 16 8 N -0.69 -22.23 6.13 -517.92 -3.17 -25.40 16 9 C 0.06 2.28 6.17 85.56 0.53 2.81 16 10 C 0.44 21.30 7.82 87.66 0.69 21.98 16 11 O -0.62 -35.22 15.78 -3.08 -0.05 -35.27 16 12 N -0.57 -29.97 5.29 -306.98 -1.62 -31.60 16 13 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 14 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 15 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 16 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 17 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 N -0.71 -11.54 4.53 -445.95 -2.02 -13.56 16 22 C 0.58 12.96 7.77 86.62 0.67 13.63 16 23 O -0.60 -18.01 16.58 -4.14 -0.07 -18.08 16 24 C -0.27 -4.75 6.29 -19.04 -0.12 -4.87 16 25 C -0.19 -2.24 10.56 23.62 0.25 -1.99 16 26 C -0.01 -0.07 11.89 83.11 0.99 0.92 16 27 N -0.54 -3.78 5.90 -194.56 -1.15 -4.93 16 28 H 0.43 -0.01 8.96 -92.70 -0.83 -0.84 16 29 C 0.07 0.94 11.69 83.92 0.98 1.92 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.99 7.75 -2.39 -0.02 0.97 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.34 11.49 8.43 -89.69 -0.76 10.73 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.40 19.66 7.90 -92.70 -0.73 18.92 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.41 4.75 7.73 -92.71 -0.72 4.03 16 47 H 0.16 1.30 7.70 -2.91 -0.02 1.28 16 48 H 0.20 0.16 8.06 -2.91 -0.02 0.13 16 49 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -78.93 413.89 -0.79 -79.72 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -2.05 Total: 40.22 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 7.02 Total: 13.46 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -7.68 Total: -125.27 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.12 Total: -53.35 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -78.93 -0.79 -79.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170933937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.059 kcal (2) G-P(sol) polarization free energy of solvation -78.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds