Wall clock time and date at job start Tue Mar 31 2020 20:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46711 * 2 1 4 4 C 1.53000 * 109.47219 * 239.99471 * 2 1 3 5 5 C 1.52999 * 109.46972 * 175.00053 * 4 2 1 6 6 C 1.53000 * 109.46966 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46966 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.36940 * 120.00259 * 179.97438 * 8 7 6 10 10 H 1.07993 * 119.99868 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99685 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00108 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99436 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47432 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47094 * 120.00295 * 13 11 9 16 16 H 1.48504 * 109.46901 * 239.99989 * 13 11 9 17 17 N 1.46497 * 109.46778 * 119.99621 * 2 1 3 18 18 C 1.34781 * 119.99972 * 275.00204 * 17 2 1 19 19 O 1.21677 * 119.99953 * 355.10277 * 18 17 2 20 20 C 1.46772 * 119.99982 * 175.10974 * 18 17 2 21 21 C 1.36934 * 126.93823 * 185.93162 * 20 18 17 22 22 N 1.33567 * 107.86600 * 179.97438 * 21 20 18 23 23 C 1.30246 * 109.65146 * 359.97438 * 22 21 20 24 24 N 1.35191 * 108.96900 * 359.79297 * 23 22 21 25 25 C 1.46509 * 123.69046 * 179.49846 * 24 23 22 26 26 C 1.53465 * 108.19377 * 344.30709 * 25 24 23 27 27 O 1.43042 * 109.61338 * 47.90895 * 26 25 24 28 28 C 1.43425 * 114.05995 * 290.04120 * 27 26 25 29 29 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 300.00128 * 1 2 3 31 31 H 1.08997 * 109.47102 * 60.00619 * 1 2 3 32 32 H 1.09008 * 109.46729 * 55.00212 * 4 2 1 33 33 H 1.08992 * 109.47435 * 295.00278 * 4 2 1 34 34 H 1.09003 * 109.47148 * 59.99760 * 5 4 2 35 35 H 1.09000 * 109.47065 * 300.00072 * 5 4 2 36 36 H 1.09000 * 109.46963 * 299.99738 * 6 5 4 37 37 H 1.08995 * 109.47281 * 60.00179 * 6 5 4 38 38 H 1.09005 * 109.47493 * 299.99844 * 7 6 5 39 39 H 1.08999 * 109.47408 * 59.99813 * 7 6 5 40 40 H 0.96998 * 119.99874 * 0.02562 * 8 7 6 41 41 H 0.97008 * 119.99430 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00493 * 95.00402 * 17 2 1 43 43 H 1.07999 * 126.06812 * 359.94866 * 21 20 18 44 44 H 1.08994 * 109.89509 * 224.50959 * 25 24 23 45 45 H 1.09008 * 109.53536 * 103.89074 * 25 24 23 46 46 H 1.08999 * 109.44763 * 287.86853 * 26 25 24 47 47 H 1.08998 * 109.42987 * 167.93929 * 26 25 24 48 48 H 1.09001 * 109.78732 * 290.04902 * 28 27 26 49 49 H 1.08994 * 109.83587 * 169.23986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0748 -1.3342 -2.5631 7 6 5.5996 -1.2257 -2.6278 8 7 6.0880 -1.9163 -3.8238 9 6 7.4300 -1.9518 -4.0940 10 1 8.1284 -1.4710 -3.4252 11 6 7.8928 -2.6068 -5.2271 12 7 7.0417 -3.1932 -6.0420 13 14 9.7235 -2.6557 -5.5953 14 1 10.4618 -1.9267 -4.5329 15 1 10.1823 -4.0675 -5.6379 16 1 9.9818 -2.0115 -6.9081 17 7 2.0183 -0.6905 1.1962 18 6 2.1469 -0.0181 2.3572 19 8 1.9433 1.1810 2.3915 20 6 2.5328 -0.7322 3.5800 21 6 2.5948 -0.2188 4.8480 22 7 2.9877 -1.1976 5.6676 23 6 3.1739 -2.2916 4.9857 24 7 2.8983 -2.0506 3.6843 25 6 3.0124 -3.0603 2.6289 26 6 3.8419 -4.2310 3.1735 27 8 3.3520 -4.6074 4.4636 28 6 3.6160 -3.6445 5.4932 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2618 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3845 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8877 -0.1753 -2.6713 39 1 6.0346 -1.6852 -1.7403 40 1 5.4608 -2.3479 -4.4248 41 1 7.3652 -3.6512 -6.8336 42 1 2.2490 -1.6317 1.1528 43 1 2.3670 0.7972 5.1344 44 1 3.5081 -2.6319 1.7578 45 1 2.0185 -3.4113 2.3512 46 1 4.8859 -3.9287 3.2559 47 1 3.7622 -5.0791 2.4935 48 1 4.6831 -3.6247 5.7150 49 1 3.0570 -3.9020 6.3927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171350020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:17 Heat of formation + Delta-G solvation = -17.464266 kcal Electronic energy + Delta-G solvation = -29116.203013 eV Core-core repulsion = 25079.399155 eV Total energy + Delta-G solvation = -4036.803858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.99898 -39.95343 -38.84720 -37.08832 -35.45676 -34.85433 -33.29443 -31.82817 -31.03981 -30.51409 -30.14727 -27.54743 -26.73623 -24.70185 -24.38185 -23.47130 -22.06161 -21.09919 -20.93933 -20.73908 -20.21002 -18.46068 -17.54977 -17.07062 -16.80086 -16.58113 -16.07877 -15.77887 -15.62678 -15.15777 -14.97609 -14.75180 -14.63373 -14.28442 -14.04009 -13.70277 -13.62036 -13.30774 -13.22785 -13.05493 -13.00748 -12.53292 -12.39552 -11.91717 -11.87618 -11.58572 -11.38574 -11.09528 -10.96819 -10.87553 -10.81545 -10.62585 -10.48809 -10.42472 -10.29694 -10.19519 -10.02419 -9.73306 -9.47101 -8.91542 -8.87587 -6.95981 -5.80657 -3.09317 0.85619 1.88868 2.34958 2.72346 2.94828 3.04143 3.40008 3.45855 3.48061 3.49917 3.72650 4.06604 4.20862 4.26346 4.40596 4.58213 4.64573 4.73019 4.80264 4.81719 4.85404 4.91259 4.95744 5.14024 5.14799 5.27716 5.33753 5.45636 5.48760 5.52086 5.58304 5.67338 5.77320 5.84640 5.98288 6.01638 6.07694 6.19492 6.20582 6.24281 6.29954 6.36884 6.44586 6.80869 6.84863 7.03473 7.46126 7.66673 7.78973 8.38686 9.49672 10.08091 10.42618 11.42438 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002460 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.883253 B =11378.841188 C =12997.787632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.725 5.725 18 C 0.597 3.403 19 O -0.523 6.523 20 C -0.078 4.078 21 C 0.065 3.935 22 N -0.479 5.479 23 C 0.193 3.807 24 N -0.439 5.439 25 C 0.054 3.946 26 C 0.048 3.952 27 O -0.368 6.368 28 C 0.146 3.854 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.393 0.607 43 H 0.188 0.812 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.129 0.871 48 H 0.091 0.909 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -0.766 21.449 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.379 5.379 18 C 0.384 3.616 19 O -0.398 6.398 20 C -0.193 4.193 21 C -0.089 4.089 22 N -0.199 5.199 23 C -0.070 4.070 24 N -0.124 5.124 25 C -0.068 4.068 26 C -0.029 4.029 27 O -0.284 6.284 28 C 0.068 3.932 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.230 0.770 43 H 0.205 0.795 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.219 -0.080 22.157 26.327 hybrid contribution 0.901 -0.417 -1.566 1.854 sum -13.318 -0.496 20.591 24.527 Atomic orbital electron populations 1.22186 0.95050 1.02164 1.02761 1.21143 0.93935 0.98051 0.83388 0.88759 1.21960 0.96924 1.00861 0.96829 1.21527 0.93865 1.01385 0.98443 1.21733 0.97340 1.00197 0.97095 1.20637 0.90898 0.95400 0.90550 1.42391 1.05381 1.64942 1.25176 1.19290 0.83888 1.28378 1.05516 0.91194 1.24753 0.97773 1.00907 0.97669 1.69672 1.32724 1.40726 1.15180 0.86115 0.85011 0.77242 0.77837 1.20540 1.21822 1.21797 1.46337 1.67663 1.14034 1.09890 1.16790 0.77017 0.86369 0.81472 1.90856 1.50815 1.13114 1.85024 1.21087 1.15912 0.84349 0.97969 1.22762 0.99968 0.99246 0.86893 1.69876 1.18750 0.98406 1.32826 1.24207 1.03516 0.98578 0.80699 1.45285 1.49354 1.08735 1.09027 1.23022 1.04143 0.88995 0.90662 1.23047 0.97079 0.97128 0.85688 1.88196 1.80260 1.42785 1.17209 1.21378 1.01875 0.78885 0.91094 0.92515 0.92191 0.91126 0.89750 0.91442 0.92660 0.91698 0.92140 0.91860 0.96528 0.96800 0.78342 0.93548 0.76968 0.79537 0.87433 0.87887 0.90776 0.85318 0.89110 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.28 2.62 -67.93 -0.18 1.10 16 3 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 4 C -0.13 -1.13 4.75 -26.73 -0.13 -1.26 16 5 C -0.11 -1.30 5.10 -26.73 -0.14 -1.44 16 6 C -0.13 -1.87 5.33 -26.73 -0.14 -2.01 16 7 C 0.15 3.02 6.26 -4.04 -0.03 3.00 16 8 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 9 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.73 -6.68 4.52 -55.09 -0.25 -6.93 16 18 C 0.60 7.01 7.75 -12.81 -0.10 6.92 16 19 O -0.52 -7.72 16.55 5.21 0.09 -7.63 16 20 C -0.08 -0.86 6.95 -82.49 -0.57 -1.43 16 21 C 0.07 0.75 11.68 -17.27 -0.20 0.54 16 22 N -0.48 -5.49 11.19 -10.29 -0.12 -5.61 16 23 C 0.19 1.83 7.78 -155.29 -1.21 0.62 16 24 N -0.44 -3.96 3.16 -109.66 -0.35 -4.31 16 25 C 0.05 0.32 5.59 -3.80 -0.02 0.29 16 26 C 0.05 0.24 6.83 37.40 0.26 0.49 16 27 O -0.37 -2.47 10.78 -35.23 -0.38 -2.85 16 28 C 0.15 0.91 7.29 36.21 0.26 1.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.61 7.75 -51.93 -0.40 0.20 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.39 2.86 4.80 -40.82 -0.20 2.66 16 43 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 44 H 0.11 0.55 6.72 -51.93 -0.35 0.20 16 45 H 0.10 0.47 8.06 -51.92 -0.42 0.05 16 46 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 47 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -35.57 399.29 -9.66 -45.24 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.95 Total: 5.66 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.09 Total: -0.42 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.32 Total: -63.33 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.29 Total: -10.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.57 -9.66 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171350020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.774 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds