Wall clock time and date at job start Tue Mar 31 2020 20:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46711 * 2 1 4 4 C 1.53000 * 109.47219 * 239.99471 * 2 1 3 5 5 C 1.52999 * 109.46972 * 175.00053 * 4 2 1 6 6 C 1.53000 * 109.46966 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46966 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.36940 * 120.00259 * 179.97438 * 8 7 6 10 10 H 1.07993 * 119.99868 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99685 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00108 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99436 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47432 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47094 * 120.00295 * 13 11 9 16 16 H 1.48504 * 109.46901 * 239.99989 * 13 11 9 17 17 N 1.46497 * 109.46778 * 119.99621 * 2 1 3 18 18 C 1.34781 * 119.99972 * 275.00204 * 17 2 1 19 19 O 1.21677 * 119.99953 * 355.10277 * 18 17 2 20 20 C 1.46772 * 119.99982 * 175.10974 * 18 17 2 21 21 C 1.36934 * 126.93823 * 185.93162 * 20 18 17 22 22 N 1.33567 * 107.86600 * 179.97438 * 21 20 18 23 23 C 1.30246 * 109.65146 * 359.97438 * 22 21 20 24 24 N 1.35191 * 108.96900 * 359.79297 * 23 22 21 25 25 C 1.46509 * 123.69046 * 179.49846 * 24 23 22 26 26 C 1.53465 * 108.19377 * 344.30709 * 25 24 23 27 27 O 1.43042 * 109.61338 * 47.90895 * 26 25 24 28 28 C 1.43425 * 114.05995 * 290.04120 * 27 26 25 29 29 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 300.00128 * 1 2 3 31 31 H 1.08997 * 109.47102 * 60.00619 * 1 2 3 32 32 H 1.09008 * 109.46729 * 55.00212 * 4 2 1 33 33 H 1.08992 * 109.47435 * 295.00278 * 4 2 1 34 34 H 1.09003 * 109.47148 * 59.99760 * 5 4 2 35 35 H 1.09000 * 109.47065 * 300.00072 * 5 4 2 36 36 H 1.09000 * 109.46963 * 299.99738 * 6 5 4 37 37 H 1.08995 * 109.47281 * 60.00179 * 6 5 4 38 38 H 1.09005 * 109.47493 * 299.99844 * 7 6 5 39 39 H 1.08999 * 109.47408 * 59.99813 * 7 6 5 40 40 H 0.96998 * 119.99874 * 0.02562 * 8 7 6 41 41 H 0.97008 * 119.99430 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00493 * 95.00402 * 17 2 1 43 43 H 1.07999 * 126.06812 * 359.94866 * 21 20 18 44 44 H 1.08994 * 109.89509 * 224.50959 * 25 24 23 45 45 H 1.09008 * 109.53536 * 103.89074 * 25 24 23 46 46 H 1.08999 * 109.44763 * 287.86853 * 26 25 24 47 47 H 1.08998 * 109.42987 * 167.93929 * 26 25 24 48 48 H 1.09001 * 109.78732 * 290.04902 * 28 27 26 49 49 H 1.08994 * 109.83587 * 169.23986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0748 -1.3342 -2.5631 7 6 5.5996 -1.2257 -2.6278 8 7 6.0880 -1.9163 -3.8238 9 6 7.4300 -1.9518 -4.0940 10 1 8.1284 -1.4710 -3.4252 11 6 7.8928 -2.6068 -5.2271 12 7 7.0417 -3.1932 -6.0420 13 14 9.7235 -2.6557 -5.5953 14 1 10.4618 -1.9267 -4.5329 15 1 10.1823 -4.0675 -5.6379 16 1 9.9818 -2.0115 -6.9081 17 7 2.0183 -0.6905 1.1962 18 6 2.1469 -0.0181 2.3572 19 8 1.9433 1.1810 2.3915 20 6 2.5328 -0.7322 3.5800 21 6 2.5948 -0.2188 4.8480 22 7 2.9877 -1.1976 5.6676 23 6 3.1739 -2.2916 4.9857 24 7 2.8983 -2.0506 3.6843 25 6 3.0124 -3.0603 2.6289 26 6 3.8419 -4.2310 3.1735 27 8 3.3520 -4.6074 4.4636 28 6 3.6160 -3.6445 5.4932 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2618 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3845 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8877 -0.1753 -2.6713 39 1 6.0346 -1.6852 -1.7403 40 1 5.4608 -2.3479 -4.4248 41 1 7.3652 -3.6512 -6.8336 42 1 2.2490 -1.6317 1.1528 43 1 2.3670 0.7972 5.1344 44 1 3.5081 -2.6319 1.7578 45 1 2.0185 -3.4113 2.3512 46 1 4.8859 -3.9287 3.2559 47 1 3.7622 -5.0791 2.4935 48 1 4.6831 -3.6247 5.7150 49 1 3.0570 -3.9020 6.3927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171350020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:16 Heat of formation + Delta-G solvation = -41.928511 kcal Electronic energy + Delta-G solvation = -29117.263863 eV Core-core repulsion = 25079.399155 eV Total energy + Delta-G solvation = -4037.864707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.71562 -40.81421 -39.36018 -38.09455 -36.91173 -35.61629 -34.72134 -33.05889 -32.08992 -31.43454 -30.88863 -28.85951 -27.33950 -25.99509 -25.21248 -24.46385 -23.43698 -22.07745 -21.87778 -21.68960 -20.85924 -19.16813 -19.09740 -18.12890 -17.56521 -17.32500 -16.71429 -16.64827 -16.41301 -16.32511 -16.15156 -15.72797 -15.46734 -15.30853 -15.25915 -15.00771 -14.61370 -14.41826 -14.18046 -14.09736 -13.84188 -13.32289 -13.09060 -12.93725 -12.91404 -12.88677 -12.50479 -12.34030 -12.33422 -12.12930 -11.91635 -11.87467 -11.73873 -11.53109 -11.44684 -11.24403 -11.15255 -10.96444 -10.85183 -10.33263 -9.64180 -9.02837 -7.98372 -5.27359 0.05973 1.25184 1.46085 1.46915 1.56641 1.57018 1.94073 2.12885 2.53833 2.57914 2.93796 3.21453 3.35438 3.38726 3.55113 3.77956 3.83556 3.96290 4.01913 4.03634 4.12298 4.25158 4.27899 4.31078 4.36705 4.45190 4.54874 4.56164 4.61192 4.65465 4.70428 4.78980 4.83925 4.87443 4.94236 4.98151 5.03750 5.22587 5.27322 5.29175 5.36491 5.44128 5.48480 5.50610 5.66207 5.83668 6.25018 6.25739 6.69922 6.94679 7.30983 8.07382 8.30626 9.25357 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002460 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.883253 B =11378.841188 C =12997.787632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.748 5.748 9 C -0.249 4.249 10 H 0.072 0.928 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.973 3.027 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.293 1.293 17 N -0.712 5.712 18 C 0.597 3.403 19 O -0.561 6.561 20 C -0.091 4.091 21 C 0.048 3.952 22 N -0.505 5.505 23 C 0.193 3.807 24 N -0.437 5.437 25 C 0.045 3.955 26 C 0.046 3.954 27 O -0.377 6.377 28 C 0.147 3.853 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.018 0.982 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.405 0.595 43 H 0.188 0.812 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.076 0.924 47 H 0.153 0.847 48 H 0.108 0.892 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 -2.147 21.671 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.090 0.910 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.220 1.220 17 N -0.366 5.366 18 C 0.384 3.616 19 O -0.440 6.440 20 C -0.207 4.207 21 C -0.106 4.106 22 N -0.225 5.225 23 C -0.070 4.070 24 N -0.121 5.121 25 C -0.076 4.076 26 C -0.031 4.031 27 O -0.293 6.293 28 C 0.069 3.931 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.207 0.793 41 H 0.061 0.939 42 H 0.244 0.756 43 H 0.205 0.795 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.095 0.905 47 H 0.170 0.830 48 H 0.126 0.874 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.209 -1.480 22.388 26.558 hybrid contribution 0.896 0.010 -1.598 1.832 sum -13.313 -1.470 20.791 24.731 Atomic orbital electron populations 1.22135 0.93929 1.03017 1.02543 1.21122 0.94740 0.97119 0.83373 0.90762 1.21875 0.94723 1.02137 0.96780 1.21435 0.95770 1.00320 0.96874 1.21596 0.93641 1.01132 0.98596 1.20852 0.94311 0.94158 0.88502 1.42623 1.04504 1.65333 1.26652 1.19665 0.85348 1.27623 1.05423 0.90983 1.25574 1.02101 1.01200 0.97809 1.69813 1.34580 1.41868 1.15645 0.85084 0.80026 0.77141 0.77572 1.19216 1.21646 1.21966 1.46263 1.66698 1.14465 1.09189 1.16890 0.76576 0.85949 0.82151 1.90830 1.52750 1.14750 1.85643 1.20979 1.16793 0.85431 0.97501 1.22941 1.00463 0.99693 0.87505 1.69850 1.19911 0.99146 1.33589 1.24870 1.02161 0.99201 0.80809 1.45447 1.48517 1.08399 1.09700 1.23356 1.05486 0.88552 0.90181 1.23238 0.96885 0.97546 0.85411 1.88189 1.80525 1.42768 1.17860 1.21628 1.03034 0.77113 0.91368 0.91074 0.93887 0.89919 0.88915 0.89438 0.91980 0.92635 0.91391 0.92324 0.97220 0.96357 0.79339 0.93866 0.75624 0.79472 0.86601 0.86294 0.90533 0.82979 0.87387 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 71.98 0.68 -1.63 16 2 C 0.14 2.37 2.62 44.99 0.12 2.48 16 3 H 0.07 1.60 7.51 -2.39 -0.02 1.58 16 4 C -0.12 -1.76 4.75 30.59 0.15 -1.61 16 5 C -0.11 -2.19 5.10 30.59 0.16 -2.04 16 6 C -0.11 -3.12 5.33 30.59 0.16 -2.96 16 7 C 0.15 5.72 6.26 86.38 0.54 6.26 16 8 N -0.75 -37.79 5.60 -343.46 -1.92 -39.71 16 9 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 10 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 11 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 12 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 13 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 17 N -0.71 -12.11 4.52 -446.42 -2.02 -14.13 16 18 C 0.60 13.98 7.75 86.47 0.67 14.65 16 19 O -0.56 -17.08 16.55 -4.28 -0.07 -17.15 16 20 C -0.09 -2.01 6.95 40.23 0.28 -1.73 16 21 C 0.05 1.14 11.68 84.12 0.98 2.12 16 22 N -0.51 -11.60 11.19 -186.48 -2.09 -13.68 16 23 C 0.19 3.47 7.78 138.28 1.08 4.55 16 24 N -0.44 -7.37 3.16 -500.86 -1.59 -8.95 16 25 C 0.05 0.42 5.59 86.53 0.48 0.90 16 26 C 0.05 0.33 6.83 72.14 0.49 0.83 16 27 O -0.38 -4.16 10.78 -148.98 -1.61 -5.76 16 28 C 0.15 1.57 7.29 71.37 0.52 2.09 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.37 19.87 7.67 -92.71 -0.71 19.16 16 41 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 42 H 0.40 4.93 4.80 -92.71 -0.44 4.48 16 43 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 44 H 0.12 0.87 6.72 -2.39 -0.02 0.86 16 45 H 0.12 0.74 8.06 -2.38 -0.02 0.72 16 46 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 47 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.99 399.29 0.44 -76.55 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.20 Total: 26.45 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 7.62 Total: 7.03 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -7.33 Total: -134.80 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.68 Total: -22.91 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.99 0.44 -76.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171350020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.621 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds