Wall clock time and date at job start Tue Mar 31 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 C 1.52998 * 109.47699 * 120.00909 * 2 1 3 5 5 C 1.52994 * 109.47592 * 185.00236 * 4 2 1 6 6 C 1.52993 * 109.47295 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47365 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47311 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99927 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00162 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00075 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46997 * 60.00082 * 13 11 9 15 15 H 1.48503 * 109.46953 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47085 * 300.00317 * 13 11 9 17 17 N 1.46509 * 109.46950 * 240.00669 * 2 1 3 18 18 C 1.34769 * 119.99810 * 84.99767 * 17 2 1 19 19 O 1.21675 * 120.00287 * 355.12589 * 18 17 2 20 20 C 1.46767 * 119.99823 * 175.12761 * 18 17 2 21 21 C 1.36939 * 126.94034 * 185.94434 * 20 18 17 22 22 N 1.33564 * 107.86559 * 179.97438 * 21 20 18 23 23 C 1.30243 * 109.65223 * 359.97438 * 22 21 20 24 24 N 1.35181 * 108.97333 * 359.79895 * 23 22 21 25 25 C 1.46503 * 123.69719 * 179.50177 * 24 23 22 26 26 C 1.53478 * 108.18965 * 344.29663 * 25 24 23 27 27 O 1.43042 * 109.60813 * 47.91785 * 26 25 24 28 28 C 1.43432 * 114.05518 * 290.03383 * 27 26 25 29 29 H 1.09007 * 109.47121 * 299.99237 * 1 2 3 30 30 H 1.08998 * 109.47587 * 59.99485 * 1 2 3 31 31 H 1.09005 * 109.47283 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46811 * 305.00110 * 4 2 1 33 33 H 1.08995 * 109.47254 * 64.99153 * 4 2 1 34 34 H 1.09006 * 109.46654 * 299.99350 * 5 4 2 35 35 H 1.08995 * 109.47705 * 59.99193 * 5 4 2 36 36 H 1.08998 * 109.47447 * 299.99585 * 6 5 4 37 37 H 1.09006 * 109.47511 * 59.99518 * 6 5 4 38 38 H 1.09006 * 109.46745 * 299.99601 * 7 6 5 39 39 H 1.08995 * 109.47545 * 59.99402 * 7 6 5 40 40 H 0.97000 * 120.00155 * 359.97438 * 8 7 6 41 41 H 0.96994 * 119.99935 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99430 * 264.99940 * 17 2 1 43 43 H 1.08001 * 126.06937 * 359.94099 * 21 20 18 44 44 H 1.09001 * 109.89851 * 224.50996 * 25 24 23 45 45 H 1.08999 * 109.54236 * 103.88195 * 25 24 23 46 46 H 1.08994 * 109.45075 * 287.87657 * 26 25 24 47 47 H 1.09003 * 109.42290 * 167.94195 * 26 25 24 48 48 H 1.09000 * 109.78935 * 290.04955 * 28 27 26 49 49 H 1.08998 * 109.83492 * 169.23687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0748 -1.3343 2.5629 7 6 5.5997 -1.2268 2.6271 8 7 6.0881 -1.9176 3.8231 9 6 7.4303 -1.9548 4.0922 10 1 8.1288 -1.4746 3.4229 11 6 7.8930 -2.6089 5.2257 12 7 7.0418 -3.1938 6.0417 13 14 9.7238 -2.6591 5.5932 14 1 10.2366 -1.2735 5.7440 15 1 9.9557 -3.4130 6.8514 16 1 10.4347 -3.3310 4.4759 17 7 2.0182 -0.6905 -1.1963 18 6 2.1469 -0.0180 -2.3572 19 8 1.7747 1.1377 -2.4352 20 6 2.7359 -0.6799 -3.5272 21 6 3.0369 -0.1051 -4.7332 22 7 3.5558 -1.0514 -5.5200 23 6 3.5968 -2.1827 -4.8759 24 7 3.1018 -1.9982 -3.6316 25 6 2.9885 -3.0663 -2.6353 26 6 3.1345 -4.4126 -3.3575 27 8 4.2711 -4.3712 -4.2251 28 6 4.1045 -3.5188 -5.3665 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2620 2.1369 33 1 1.7517 -1.7716 1.2054 34 1 3.9994 -1.0729 0.4257 35 1 3.8532 0.4368 1.3572 36 1 3.6403 -0.8745 3.4505 37 1 3.7864 -2.3846 2.5196 38 1 6.0340 -1.6869 1.7394 39 1 5.8885 -0.1767 2.6701 40 1 5.4608 -2.3486 4.4244 41 1 7.3652 -3.6511 6.8335 42 1 2.2489 -1.6317 -1.1528 43 1 2.8817 0.9297 -5.0007 44 1 2.0161 -3.0151 -2.1455 45 1 3.7802 -2.9587 -1.8938 46 1 2.2372 -4.6090 -3.9442 47 1 3.2682 -5.2059 -2.6220 48 1 3.3815 -3.9588 -6.0534 49 1 5.0610 -3.3869 -5.8723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171350021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:22 Heat of formation + Delta-G solvation = -16.698928 kcal Electronic energy + Delta-G solvation = -29142.708034 eV Core-core repulsion = 25105.937364 eV Total energy + Delta-G solvation = -4036.770670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.99094 -39.95267 -38.84388 -37.07927 -35.43836 -34.84626 -33.27251 -31.82511 -31.02994 -30.51573 -30.12749 -27.52674 -26.72720 -24.69923 -24.36940 -23.45946 -22.04531 -21.10128 -20.93543 -20.72066 -20.21006 -18.46086 -17.54235 -17.05075 -16.73062 -16.65163 -16.04116 -15.79662 -15.63096 -15.17336 -14.88797 -14.71233 -14.64000 -14.28994 -14.02010 -13.81526 -13.55972 -13.31978 -13.19603 -13.03670 -12.96557 -12.48562 -12.43338 -11.93759 -11.84755 -11.56789 -11.36365 -11.07253 -10.96005 -10.82515 -10.78875 -10.63368 -10.49905 -10.39459 -10.28663 -10.18329 -10.04591 -9.70181 -9.47397 -8.87949 -8.86465 -6.93441 -5.77820 -3.06486 0.86425 1.89664 2.35640 2.72112 2.95357 3.04955 3.43416 3.47452 3.48763 3.50227 3.71964 4.06157 4.21405 4.21825 4.41451 4.60448 4.64075 4.74067 4.79504 4.81888 4.85308 4.89274 4.95726 5.14560 5.16008 5.28334 5.35567 5.46962 5.49518 5.53687 5.59899 5.68779 5.78160 5.86390 5.99775 6.02639 6.08906 6.21887 6.22029 6.25205 6.32421 6.39522 6.45488 6.83844 6.87683 7.03876 7.47208 7.68433 7.78982 8.41606 9.52360 10.10768 10.45448 11.45204 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.002530 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.516154 B =11066.274980 C =12723.575520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.734 5.734 9 C -0.241 4.241 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.286 1.286 17 N -0.725 5.725 18 C 0.597 3.403 19 O -0.523 6.523 20 C -0.078 4.078 21 C 0.066 3.934 22 N -0.479 5.479 23 C 0.193 3.807 24 N -0.439 5.439 25 C 0.053 3.947 26 C 0.050 3.950 27 O -0.365 6.365 28 C 0.146 3.854 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.393 0.607 43 H 0.188 0.812 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.128 0.872 48 H 0.090 0.910 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.015 -1.258 -21.898 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.378 5.378 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 N -0.379 5.379 18 C 0.384 3.616 19 O -0.398 6.398 20 C -0.193 4.193 21 C -0.088 4.088 22 N -0.198 5.198 23 C -0.070 4.070 24 N -0.124 5.124 25 C -0.069 4.069 26 C -0.028 4.028 27 O -0.282 6.282 28 C 0.068 3.932 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.035 0.965 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.230 0.770 43 H 0.205 0.795 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.146 0.854 48 H 0.108 0.892 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.685 -0.501 -22.510 27.440 hybrid contribution 0.418 -0.531 1.419 1.571 sum -15.267 -1.033 -21.091 26.057 Atomic orbital electron populations 1.22180 0.95051 1.02083 1.02849 1.21137 0.94026 0.97816 0.83361 0.88968 1.21962 0.96959 1.00837 0.96802 1.21528 0.93841 1.01358 0.98551 1.21727 0.97360 1.00178 0.97051 1.20640 0.90895 0.95395 0.90581 1.42369 1.05330 1.64990 1.25161 1.19210 0.83893 1.28559 1.05515 0.91290 1.24745 0.97763 1.00899 0.97636 1.69649 1.32898 1.40735 1.15126 0.86255 0.85059 0.77529 0.77293 1.21228 1.21630 1.21238 1.46347 1.67683 1.13956 1.09932 1.16785 0.77884 0.85743 0.81233 1.90853 1.49228 1.16260 1.83480 1.21082 1.14124 0.84401 0.99735 1.22764 0.98472 0.99540 0.88049 1.69874 1.20016 0.98102 1.31846 1.24202 1.01598 0.98368 0.82814 1.45271 1.45821 1.08154 1.13141 1.23031 1.04878 0.86872 0.92145 1.23024 0.90186 0.95181 0.94391 1.88236 1.38365 1.65292 1.36287 1.21385 1.03587 0.80572 0.87676 0.91199 0.91997 0.92606 0.89762 0.91458 0.92546 0.91747 0.91890 0.92160 0.96747 0.96542 0.78351 0.93463 0.76973 0.79534 0.87812 0.87417 0.91161 0.85392 0.89232 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.15 0.35 -0.98 16 2 C 0.14 1.29 2.54 -67.93 -0.17 1.12 16 3 H 0.09 1.01 7.65 -51.93 -0.40 0.61 16 4 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 5 C -0.11 -1.34 5.10 -26.74 -0.14 -1.48 16 6 C -0.13 -1.91 5.33 -26.73 -0.14 -2.05 16 7 C 0.15 3.09 6.26 -4.04 -0.03 3.07 16 8 N -0.73 -18.96 5.60 -59.91 -0.34 -19.29 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 12 N -0.94 -28.46 13.06 55.49 0.72 -27.74 16 13 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 N -0.73 -6.68 4.52 -55.09 -0.25 -6.92 16 18 C 0.60 7.00 7.74 -12.82 -0.10 6.91 16 19 O -0.52 -7.66 16.59 5.21 0.09 -7.57 16 20 C -0.08 -0.87 6.95 -82.48 -0.57 -1.44 16 21 C 0.07 0.76 11.68 -17.27 -0.20 0.56 16 22 N -0.48 -5.57 11.19 -10.29 -0.12 -5.69 16 23 C 0.19 1.86 7.78 -155.30 -1.21 0.65 16 24 N -0.44 -4.00 3.16 -109.66 -0.35 -4.35 16 25 C 0.05 0.31 5.59 -3.79 -0.02 0.29 16 26 C 0.05 0.23 6.83 37.41 0.26 0.48 16 27 O -0.37 -2.61 10.79 -35.23 -0.38 -2.99 16 28 C 0.15 0.94 7.29 36.21 0.26 1.20 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.39 2.86 4.80 -40.82 -0.20 2.66 16 43 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.10 0.40 6.72 -51.93 -0.35 0.05 16 45 H 0.11 0.65 8.06 -51.93 -0.42 0.23 16 46 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 47 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -36.07 399.36 -9.66 -45.73 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.96 Total: 5.74 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.08 Total: -0.50 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.32 Total: -63.99 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.29 Total: -10.56 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.07 -9.66 -45.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171350021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.032 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds