Wall clock time and date at job start Tue Mar 31 2020 20:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 C 1.52998 * 109.47699 * 120.00909 * 2 1 3 5 5 C 1.52994 * 109.47592 * 185.00236 * 4 2 1 6 6 C 1.52993 * 109.47295 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47365 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47311 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99927 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00162 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00075 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46997 * 60.00082 * 13 11 9 15 15 H 1.48503 * 109.46953 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47085 * 300.00317 * 13 11 9 17 17 N 1.46509 * 109.46950 * 240.00669 * 2 1 3 18 18 C 1.34769 * 119.99810 * 84.99767 * 17 2 1 19 19 O 1.21675 * 120.00287 * 355.12589 * 18 17 2 20 20 C 1.46767 * 119.99823 * 175.12761 * 18 17 2 21 21 C 1.36939 * 126.94034 * 185.94434 * 20 18 17 22 22 N 1.33564 * 107.86559 * 179.97438 * 21 20 18 23 23 C 1.30243 * 109.65223 * 359.97438 * 22 21 20 24 24 N 1.35181 * 108.97333 * 359.79895 * 23 22 21 25 25 C 1.46503 * 123.69719 * 179.50177 * 24 23 22 26 26 C 1.53478 * 108.18965 * 344.29663 * 25 24 23 27 27 O 1.43042 * 109.60813 * 47.91785 * 26 25 24 28 28 C 1.43432 * 114.05518 * 290.03383 * 27 26 25 29 29 H 1.09007 * 109.47121 * 299.99237 * 1 2 3 30 30 H 1.08998 * 109.47587 * 59.99485 * 1 2 3 31 31 H 1.09005 * 109.47283 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46811 * 305.00110 * 4 2 1 33 33 H 1.08995 * 109.47254 * 64.99153 * 4 2 1 34 34 H 1.09006 * 109.46654 * 299.99350 * 5 4 2 35 35 H 1.08995 * 109.47705 * 59.99193 * 5 4 2 36 36 H 1.08998 * 109.47447 * 299.99585 * 6 5 4 37 37 H 1.09006 * 109.47511 * 59.99518 * 6 5 4 38 38 H 1.09006 * 109.46745 * 299.99601 * 7 6 5 39 39 H 1.08995 * 109.47545 * 59.99402 * 7 6 5 40 40 H 0.97000 * 120.00155 * 359.97438 * 8 7 6 41 41 H 0.96994 * 119.99935 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99430 * 264.99940 * 17 2 1 43 43 H 1.08001 * 126.06937 * 359.94099 * 21 20 18 44 44 H 1.09001 * 109.89851 * 224.50996 * 25 24 23 45 45 H 1.08999 * 109.54236 * 103.88195 * 25 24 23 46 46 H 1.08994 * 109.45075 * 287.87657 * 26 25 24 47 47 H 1.09003 * 109.42290 * 167.94195 * 26 25 24 48 48 H 1.09000 * 109.78935 * 290.04955 * 28 27 26 49 49 H 1.08998 * 109.83492 * 169.23687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0748 -1.3343 2.5629 7 6 5.5997 -1.2268 2.6271 8 7 6.0881 -1.9176 3.8231 9 6 7.4303 -1.9548 4.0922 10 1 8.1288 -1.4746 3.4229 11 6 7.8930 -2.6089 5.2257 12 7 7.0418 -3.1938 6.0417 13 14 9.7238 -2.6591 5.5932 14 1 10.2366 -1.2735 5.7440 15 1 9.9557 -3.4130 6.8514 16 1 10.4347 -3.3310 4.4759 17 7 2.0182 -0.6905 -1.1963 18 6 2.1469 -0.0180 -2.3572 19 8 1.7747 1.1377 -2.4352 20 6 2.7359 -0.6799 -3.5272 21 6 3.0369 -0.1051 -4.7332 22 7 3.5558 -1.0514 -5.5200 23 6 3.5968 -2.1827 -4.8759 24 7 3.1018 -1.9982 -3.6316 25 6 2.9885 -3.0663 -2.6353 26 6 3.1345 -4.4126 -3.3575 27 8 4.2711 -4.3712 -4.2251 28 6 4.1045 -3.5188 -5.3665 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2620 2.1369 33 1 1.7517 -1.7716 1.2054 34 1 3.9994 -1.0729 0.4257 35 1 3.8532 0.4368 1.3572 36 1 3.6403 -0.8745 3.4505 37 1 3.7864 -2.3846 2.5196 38 1 6.0340 -1.6869 1.7394 39 1 5.8885 -0.1767 2.6701 40 1 5.4608 -2.3486 4.4244 41 1 7.3652 -3.6511 6.8335 42 1 2.2489 -1.6317 -1.1528 43 1 2.8817 0.9297 -5.0007 44 1 2.0161 -3.0151 -2.1455 45 1 3.7802 -2.9587 -1.8938 46 1 2.2372 -4.6090 -3.9442 47 1 3.2682 -5.2059 -2.6220 48 1 3.3815 -3.9588 -6.0534 49 1 5.0610 -3.3869 -5.8723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171350021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:21 Heat of formation + Delta-G solvation = -41.724597 kcal Electronic energy + Delta-G solvation = -29143.793228 eV Core-core repulsion = 25105.937364 eV Total energy + Delta-G solvation = -4037.855865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.71280 -40.81359 -39.35674 -38.09765 -36.91276 -35.61854 -34.72029 -33.06191 -32.09983 -31.42958 -30.87923 -28.85764 -27.33358 -25.99359 -25.20668 -24.45965 -23.44647 -22.08981 -21.87850 -21.69811 -20.86041 -19.17270 -19.09794 -18.12687 -17.48708 -17.40559 -16.72185 -16.59650 -16.36993 -16.31518 -16.28698 -15.61924 -15.46380 -15.30852 -15.26900 -15.04840 -14.60767 -14.42549 -14.23437 -14.05253 -13.85391 -13.28278 -13.07389 -12.94914 -12.91889 -12.85760 -12.49276 -12.34094 -12.31226 -12.21757 -11.91001 -11.87699 -11.74010 -11.53791 -11.46006 -11.23373 -11.14371 -10.95186 -10.84885 -10.33791 -9.63766 -9.03557 -7.98396 -5.27690 0.06135 1.25933 1.45705 1.48673 1.55058 1.56397 1.93196 2.14024 2.53887 2.59833 2.94350 3.22211 3.34856 3.39281 3.54795 3.77882 3.84871 3.96044 4.00611 4.03285 4.11947 4.24949 4.27718 4.30258 4.36527 4.46077 4.55053 4.55935 4.60927 4.65221 4.70365 4.79127 4.83578 4.87346 4.94118 4.97248 5.03878 5.22546 5.28678 5.29367 5.36044 5.43041 5.47694 5.49409 5.67863 5.85121 6.24657 6.25976 6.70213 6.94554 7.30618 8.06673 8.30497 9.24901 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.002530 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.516154 B =11066.274980 C =12723.575520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.111 4.111 7 C 0.148 3.852 8 N -0.748 5.748 9 C -0.253 4.253 10 H 0.071 0.929 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.712 5.712 18 C 0.598 3.402 19 O -0.560 6.560 20 C -0.091 4.091 21 C 0.047 3.953 22 N -0.506 5.506 23 C 0.193 3.807 24 N -0.436 5.436 25 C 0.043 3.957 26 C 0.047 3.953 27 O -0.382 6.382 28 C 0.147 3.853 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.404 0.596 43 H 0.188 0.812 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.150 0.850 48 H 0.115 0.885 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.442 -2.755 -22.101 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.149 4.149 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.385 4.385 10 H 0.089 0.911 11 C -0.265 4.265 12 N -0.618 5.618 13 Si 0.802 3.198 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.366 5.366 18 C 0.384 3.616 19 O -0.438 6.438 20 C -0.207 4.207 21 C -0.107 4.107 22 N -0.226 5.226 23 C -0.071 4.071 24 N -0.120 5.120 25 C -0.078 4.078 26 C -0.029 4.029 27 O -0.298 6.298 28 C 0.069 3.931 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.207 0.793 41 H 0.062 0.938 42 H 0.243 0.757 43 H 0.205 0.795 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.168 0.832 48 H 0.132 0.868 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.116 -2.019 -22.721 27.929 hybrid contribution 0.552 -0.069 1.450 1.553 sum -15.563 -2.088 -21.271 26.439 Atomic orbital electron populations 1.22122 0.93806 1.03068 1.02565 1.21118 0.94925 0.96860 0.83291 0.90986 1.21877 0.94534 1.02207 0.96851 1.21433 0.95943 1.00265 0.96805 1.21591 0.93553 1.01122 0.98638 1.20847 0.94404 0.94146 0.88444 1.42593 1.04466 1.65392 1.26601 1.19602 0.85368 1.28011 1.05538 0.91092 1.25577 1.02181 1.01078 0.97702 1.69796 1.34746 1.41768 1.15531 0.85214 0.79897 0.77649 0.77025 1.20519 1.21741 1.20266 1.46271 1.66757 1.14376 1.09219 1.16875 0.77501 0.85330 0.81861 1.90828 1.51002 1.17858 1.84145 1.20991 1.14816 0.85505 0.99405 1.22941 0.99044 0.99992 0.88682 1.69846 1.21091 0.98909 1.32707 1.24875 1.00421 0.98957 0.82827 1.45439 1.45003 1.07957 1.13645 1.23374 1.06033 0.86562 0.91792 1.23268 0.90164 0.94779 0.94708 1.88216 1.39806 1.65069 1.36754 1.21631 1.04579 0.78987 0.87905 0.90035 0.93772 0.90941 0.88829 0.89362 0.92242 0.92646 0.92163 0.91443 0.96677 0.97199 0.79300 0.93807 0.75651 0.79497 0.85668 0.87556 0.89517 0.83195 0.86757 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 2 C 0.14 2.39 2.54 44.99 0.11 2.50 16 3 H 0.07 1.55 7.65 -2.39 -0.02 1.53 16 4 C -0.12 -1.78 4.75 30.59 0.15 -1.63 16 5 C -0.11 -2.30 5.10 30.59 0.16 -2.14 16 6 C -0.11 -3.21 5.33 30.59 0.16 -3.04 16 7 C 0.15 5.91 6.26 86.38 0.54 6.45 16 8 N -0.75 -38.51 5.60 -343.44 -1.92 -40.44 16 9 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 10 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 11 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 12 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 13 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 N -0.71 -12.12 4.52 -446.44 -2.02 -14.14 16 18 C 0.60 13.97 7.74 86.47 0.67 14.64 16 19 O -0.56 -16.89 16.59 -4.27 -0.07 -16.96 16 20 C -0.09 -2.03 6.95 40.23 0.28 -1.75 16 21 C 0.05 1.14 11.68 84.12 0.98 2.12 16 22 N -0.51 -11.85 11.19 -186.48 -2.09 -13.93 16 23 C 0.19 3.54 7.78 138.29 1.08 4.62 16 24 N -0.44 -7.49 3.16 -500.85 -1.59 -9.07 16 25 C 0.04 0.41 5.59 86.54 0.48 0.89 16 26 C 0.05 0.30 6.83 72.14 0.49 0.79 16 27 O -0.38 -4.60 10.79 -148.98 -1.61 -6.21 16 28 C 0.15 1.63 7.29 71.37 0.52 2.15 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.25 7.75 -2.38 -0.02 1.24 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 38 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.38 20.18 7.67 -92.71 -0.71 19.47 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.40 4.95 4.80 -92.71 -0.44 4.50 16 43 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.13 0.59 6.72 -2.39 -0.02 0.57 16 45 H 0.11 1.05 8.06 -2.39 -0.02 1.03 16 46 H 0.09 0.28 8.10 -2.39 -0.02 0.26 16 47 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -78.43 399.36 0.44 -77.99 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.20 Total: 26.68 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 7.61 Total: 6.67 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -7.33 Total: -136.37 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.68 Total: -23.17 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.43 0.44 -77.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171350021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.265 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds