Wall clock time and date at job start Tue Mar 31 2020 20:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 5 5 C 1.53005 * 109.47150 * 185.00058 * 4 2 1 6 6 C 1.52999 * 109.47150 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47123 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47411 * 180.02562 * 7 6 5 9 9 C 1.36937 * 120.00569 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00474 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99722 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47086 * 59.99793 * 13 11 9 15 15 H 1.48500 * 109.47110 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46814 * 299.99922 * 13 11 9 17 17 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 18 18 C 1.34773 * 119.99969 * 84.72073 * 17 2 1 19 19 O 1.21573 * 120.00176 * 0.02562 * 18 17 2 20 20 C 1.47726 * 119.99715 * 179.97438 * 18 17 2 21 21 C 1.41300 * 125.94824 * 180.02562 * 20 18 17 22 22 C 1.34851 * 107.70378 * 179.97438 * 21 20 18 23 23 N 1.36397 * 107.92455 * 0.11499 * 22 21 20 24 24 N 1.32111 * 125.95592 * 359.69970 * 20 18 17 25 25 C 1.46733 * 123.62245 * 179.77405 * 23 22 21 26 26 C 1.53527 * 107.95560 * 343.03543 * 25 23 22 27 27 C 1.53223 * 109.30675 * 47.28521 * 26 25 23 28 28 O 1.36034 * 128.63600 * 180.17001 * 22 21 20 29 29 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 30 30 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 31 31 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47238 * 304.99606 * 4 2 1 33 33 H 1.09004 * 109.47119 * 65.00146 * 4 2 1 34 34 H 1.09006 * 109.46641 * 299.99859 * 5 4 2 35 35 H 1.09000 * 109.47259 * 59.99588 * 5 4 2 36 36 H 1.08997 * 109.47007 * 300.00047 * 6 5 4 37 37 H 1.09000 * 109.47376 * 59.99659 * 6 5 4 38 38 H 1.09007 * 109.47260 * 299.99939 * 7 6 5 39 39 H 1.09000 * 109.47190 * 59.99647 * 7 6 5 40 40 H 0.97011 * 119.99562 * 359.97438 * 8 7 6 41 41 H 0.96998 * 120.00393 * 179.97438 * 12 11 9 42 42 H 0.97005 * 119.99811 * 265.00126 * 17 2 1 43 43 H 1.07999 * 126.14879 * 359.97438 * 21 20 18 44 44 H 1.08995 * 109.76481 * 223.41711 * 25 23 22 45 45 H 1.09001 * 109.80166 * 102.67322 * 25 23 22 46 46 H 1.09007 * 109.49628 * 287.33221 * 26 25 23 47 47 H 1.09008 * 109.49835 * 167.24004 * 26 25 23 48 48 H 1.09002 * 109.50294 * 175.46307 * 27 26 25 49 49 H 1.08996 * 109.49982 * 55.34375 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3352 2.5625 7 6 5.5997 -1.2278 2.6266 8 7 6.0882 -1.9195 3.8220 9 6 7.4303 -1.9561 4.0916 10 1 8.1287 -1.4753 3.4227 11 6 7.8930 -2.6110 5.2246 12 7 7.0418 -3.1965 6.0401 13 14 9.7239 -2.6615 5.5920 14 1 10.2366 -1.2762 5.7438 15 1 9.9558 -3.4164 6.8496 16 1 10.4347 -3.3327 4.4741 17 7 2.0183 -0.6905 -1.1963 18 6 2.1417 -0.0195 -2.3585 19 8 1.8482 1.1589 -2.4142 20 6 2.6347 -0.7157 -3.5646 21 6 2.8125 -0.1377 -4.8416 22 6 3.2770 -1.0987 -5.6657 23 7 3.3903 -2.2511 -4.9448 24 7 2.9918 -1.9857 -3.6357 25 6 3.8628 -3.5200 -5.5102 26 6 3.7743 -3.4188 -7.0396 27 6 4.3854 -2.0897 -7.4955 28 8 3.5960 -1.0053 -6.9848 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 3.9994 -1.0729 0.4258 35 1 3.8532 0.4369 1.3573 36 1 3.6403 -0.8762 3.4504 37 1 3.7866 -2.3854 2.5184 38 1 6.0340 -1.6871 1.7385 39 1 5.8885 -0.1776 2.6705 40 1 5.4608 -2.3510 4.4231 41 1 7.3652 -3.6545 6.8317 42 1 2.2490 -1.6318 -1.1527 43 1 2.6124 0.8892 -5.1095 44 1 3.2337 -4.3374 -5.1579 45 1 4.8963 -3.6953 -5.2115 46 1 2.7296 -3.4636 -7.3473 47 1 4.3229 -4.2454 -7.4913 48 1 4.3976 -2.0494 -8.5847 49 1 5.4040 -2.0084 -7.1162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171766621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:51 Heat of formation + Delta-G solvation = 1.621157 kcal Electronic energy + Delta-G solvation = -28204.139377 eV Core-core repulsion = 24168.163125 eV Total energy + Delta-G solvation = -4035.976252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20108 -39.97601 -38.75105 -36.88805 -35.23964 -35.15801 -33.23992 -31.97813 -30.98147 -30.15019 -29.80877 -27.39133 -27.01390 -24.69603 -24.07640 -23.22042 -21.97599 -20.78795 -20.59752 -20.54377 -20.19630 -18.72997 -17.22257 -16.97400 -16.63032 -16.49554 -16.05204 -15.57373 -15.39843 -15.08367 -14.92401 -14.65751 -14.59273 -14.14720 -13.86620 -13.69825 -13.49577 -13.10201 -13.04144 -12.88511 -12.81087 -12.33098 -12.21250 -11.93580 -11.78496 -11.70187 -11.40815 -11.21850 -11.19410 -10.94627 -10.76479 -10.64485 -10.39910 -10.29831 -10.21120 -9.96608 -9.62764 -9.57778 -9.16786 -8.82895 -8.81502 -6.86058 -5.71627 -2.99753 1.03901 1.68418 1.83238 2.45305 3.05163 3.21440 3.47023 3.50704 3.52310 3.54793 3.78522 4.08177 4.19218 4.42042 4.56640 4.58924 4.68213 4.72695 4.83201 4.94763 5.02273 5.03799 5.06566 5.14051 5.33052 5.46772 5.50330 5.52748 5.59170 5.59689 5.68246 5.76302 5.84630 5.95754 6.02747 6.04913 6.17656 6.28388 6.37828 6.43590 6.44919 6.53875 6.78883 6.95824 6.96350 7.00066 7.41290 7.74064 8.02427 8.47955 9.58397 10.18300 10.53030 11.51499 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.002126 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.118458 B =13169.542101 C =15274.811199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.287 1.287 17 N -0.706 5.706 18 C 0.603 3.397 19 O -0.526 6.526 20 C 0.052 3.948 21 C -0.227 4.227 22 C 0.263 3.737 23 N -0.392 5.392 24 N -0.241 5.241 25 C 0.126 3.874 26 C -0.175 4.175 27 C 0.048 3.952 28 O -0.286 6.286 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.407 0.593 43 H 0.166 0.834 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 0.094 -29.329 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.110 0.890 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.358 5.358 18 C 0.386 3.614 19 O -0.399 6.399 20 C -0.116 4.116 21 C -0.257 4.257 22 C 0.097 3.903 23 N -0.189 5.189 24 N -0.072 5.072 25 C 0.006 3.994 26 C -0.214 4.214 27 C -0.027 4.027 28 O -0.193 6.193 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.243 0.757 43 H 0.184 0.816 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.131 0.869 48 H 0.139 0.861 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.105 -0.003 -28.985 31.809 hybrid contribution 1.066 -0.355 -0.097 1.128 sum -12.039 -0.359 -29.082 31.477 Atomic orbital electron populations 1.22186 0.95178 1.02209 1.02618 1.21129 0.93895 0.97809 0.83531 0.89001 1.21940 0.96907 1.01013 0.96583 1.21534 0.93972 1.01138 0.98705 1.21717 0.97184 1.00276 0.97105 1.20652 0.91091 0.95300 0.90506 1.42389 1.05294 1.64924 1.25281 1.19214 0.83962 1.28298 1.05421 0.91314 1.24747 0.97700 1.01052 0.97738 1.69650 1.32819 1.40801 1.15174 0.86254 0.85172 0.77472 0.77229 1.21271 1.21680 1.21332 1.45983 1.66211 1.14592 1.09009 1.16834 0.77534 0.85674 0.81360 1.90810 1.49962 1.14816 1.84356 1.21980 1.02601 0.91753 0.95232 1.20197 1.15042 1.00378 0.90055 1.19439 0.99855 0.87416 0.83598 1.49299 1.53694 1.08801 1.07152 1.77575 1.19141 1.15425 0.95037 1.22019 1.01758 0.83239 0.92414 1.22653 1.04520 0.99810 0.94372 1.23147 0.94143 0.84426 1.01011 1.86665 1.69175 1.45647 1.17798 0.91337 0.92139 0.92419 0.90033 0.91263 0.92056 0.91910 0.92049 0.92145 0.96646 0.96554 0.78349 0.93522 0.75700 0.81647 0.87624 0.88789 0.89178 0.86910 0.86072 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.48 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.13 -1.32 4.75 -26.73 -0.13 -1.45 16 5 C -0.12 -1.51 5.10 -26.73 -0.14 -1.65 16 6 C -0.12 -2.06 5.33 -26.73 -0.14 -2.20 16 7 C 0.15 3.23 6.26 -4.05 -0.03 3.21 16 8 N -0.73 -19.59 5.60 -59.91 -0.34 -19.93 16 9 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.94 -29.03 13.06 55.49 0.72 -28.30 16 13 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 17 N -0.71 -7.81 4.53 -54.78 -0.25 -8.06 16 18 C 0.60 7.89 7.79 -12.39 -0.10 7.80 16 19 O -0.53 -8.22 16.57 5.30 0.09 -8.13 16 20 C 0.05 0.65 7.10 -82.71 -0.59 0.06 16 21 C -0.23 -2.68 10.58 -39.62 -0.42 -3.10 16 22 C 0.26 2.71 7.57 -16.72 -0.13 2.58 16 23 N -0.39 -3.75 4.08 -60.93 -0.25 -4.00 16 24 N -0.24 -2.82 12.32 33.43 0.41 -2.41 16 25 C 0.13 0.64 7.41 -3.64 -0.03 0.61 16 26 C -0.18 -0.46 6.16 -26.34 -0.16 -0.62 16 27 C 0.05 0.19 7.00 37.27 0.26 0.45 16 28 O -0.29 -2.39 10.65 -19.85 -0.21 -2.61 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 41 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.41 4.11 8.30 -40.82 -0.34 3.77 16 43 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 47 H 0.11 -0.02 8.14 -51.92 -0.42 -0.45 16 48 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -36.16 406.05 -8.56 -44.72 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.18 Total: 6.52 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.66 Total: -1.87 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.30 Total: -62.69 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.12 Total: -10.73 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.16 -8.56 -44.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171766621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.345 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds