Wall clock time and date at job start Tue Mar 31 2020 20:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 5 5 C 1.53005 * 109.47150 * 185.00058 * 4 2 1 6 6 C 1.52999 * 109.47150 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47123 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47411 * 180.02562 * 7 6 5 9 9 C 1.36937 * 120.00569 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00474 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99722 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47086 * 59.99793 * 13 11 9 15 15 H 1.48500 * 109.47110 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46814 * 299.99922 * 13 11 9 17 17 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 18 18 C 1.34773 * 119.99969 * 84.72073 * 17 2 1 19 19 O 1.21573 * 120.00176 * 0.02562 * 18 17 2 20 20 C 1.47726 * 119.99715 * 179.97438 * 18 17 2 21 21 C 1.41300 * 125.94824 * 180.02562 * 20 18 17 22 22 C 1.34851 * 107.70378 * 179.97438 * 21 20 18 23 23 N 1.36397 * 107.92455 * 0.11499 * 22 21 20 24 24 N 1.32111 * 125.95592 * 359.69970 * 20 18 17 25 25 C 1.46733 * 123.62245 * 179.77405 * 23 22 21 26 26 C 1.53527 * 107.95560 * 343.03543 * 25 23 22 27 27 C 1.53223 * 109.30675 * 47.28521 * 26 25 23 28 28 O 1.36034 * 128.63600 * 180.17001 * 22 21 20 29 29 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 30 30 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 31 31 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47238 * 304.99606 * 4 2 1 33 33 H 1.09004 * 109.47119 * 65.00146 * 4 2 1 34 34 H 1.09006 * 109.46641 * 299.99859 * 5 4 2 35 35 H 1.09000 * 109.47259 * 59.99588 * 5 4 2 36 36 H 1.08997 * 109.47007 * 300.00047 * 6 5 4 37 37 H 1.09000 * 109.47376 * 59.99659 * 6 5 4 38 38 H 1.09007 * 109.47260 * 299.99939 * 7 6 5 39 39 H 1.09000 * 109.47190 * 59.99647 * 7 6 5 40 40 H 0.97011 * 119.99562 * 359.97438 * 8 7 6 41 41 H 0.96998 * 120.00393 * 179.97438 * 12 11 9 42 42 H 0.97005 * 119.99811 * 265.00126 * 17 2 1 43 43 H 1.07999 * 126.14879 * 359.97438 * 21 20 18 44 44 H 1.08995 * 109.76481 * 223.41711 * 25 23 22 45 45 H 1.09001 * 109.80166 * 102.67322 * 25 23 22 46 46 H 1.09007 * 109.49628 * 287.33221 * 26 25 23 47 47 H 1.09008 * 109.49835 * 167.24004 * 26 25 23 48 48 H 1.09002 * 109.50294 * 175.46307 * 27 26 25 49 49 H 1.08996 * 109.49982 * 55.34375 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3352 2.5625 7 6 5.5997 -1.2278 2.6266 8 7 6.0882 -1.9195 3.8220 9 6 7.4303 -1.9561 4.0916 10 1 8.1287 -1.4753 3.4227 11 6 7.8930 -2.6110 5.2246 12 7 7.0418 -3.1965 6.0401 13 14 9.7239 -2.6615 5.5920 14 1 10.2366 -1.2762 5.7438 15 1 9.9558 -3.4164 6.8496 16 1 10.4347 -3.3327 4.4741 17 7 2.0183 -0.6905 -1.1963 18 6 2.1417 -0.0195 -2.3585 19 8 1.8482 1.1589 -2.4142 20 6 2.6347 -0.7157 -3.5646 21 6 2.8125 -0.1377 -4.8416 22 6 3.2770 -1.0987 -5.6657 23 7 3.3903 -2.2511 -4.9448 24 7 2.9918 -1.9857 -3.6357 25 6 3.8628 -3.5200 -5.5102 26 6 3.7743 -3.4188 -7.0396 27 6 4.3854 -2.0897 -7.4955 28 8 3.5960 -1.0053 -6.9848 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 3.9994 -1.0729 0.4258 35 1 3.8532 0.4369 1.3573 36 1 3.6403 -0.8762 3.4504 37 1 3.7866 -2.3854 2.5184 38 1 6.0340 -1.6871 1.7385 39 1 5.8885 -0.1776 2.6705 40 1 5.4608 -2.3510 4.4231 41 1 7.3652 -3.6545 6.8317 42 1 2.2490 -1.6318 -1.1527 43 1 2.6124 0.8892 -5.1095 44 1 3.2337 -4.3374 -5.1579 45 1 4.8963 -3.6953 -5.2115 46 1 2.7296 -3.4636 -7.3473 47 1 4.3229 -4.2454 -7.4913 48 1 4.3976 -2.0494 -8.5847 49 1 5.4040 -2.0084 -7.1162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171766621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:50 Heat of formation + Delta-G solvation = -24.521766 kcal Electronic energy + Delta-G solvation = -28205.273019 eV Core-core repulsion = 24168.163125 eV Total energy + Delta-G solvation = -4037.109894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.92730 -40.88482 -39.43040 -38.02493 -36.83724 -35.68398 -34.80228 -33.17869 -32.21031 -31.25841 -30.58514 -28.81372 -27.52850 -25.98701 -25.25762 -24.04023 -23.42673 -22.04409 -21.68506 -21.35059 -20.80430 -19.45803 -19.12341 -17.90586 -17.39324 -17.27365 -16.71646 -16.65600 -16.44432 -16.10338 -16.04881 -15.71854 -15.43324 -15.29429 -15.19121 -14.96770 -14.57599 -14.32522 -14.17630 -14.06126 -13.42304 -13.24622 -13.03514 -12.87948 -12.83776 -12.66256 -12.46227 -12.42726 -12.29025 -12.20253 -12.14698 -11.91024 -11.87832 -11.80489 -11.51832 -11.39841 -11.27076 -10.93771 -10.36935 -10.07407 -9.61679 -9.02320 -7.96848 -5.26403 0.16994 0.99613 1.04497 1.45577 1.49445 1.55774 1.79841 2.24813 2.28134 2.54892 3.01791 3.35885 3.49465 3.54564 3.61946 3.93681 3.95859 4.03819 4.06461 4.12983 4.19667 4.28135 4.36153 4.41727 4.42783 4.52026 4.57269 4.61680 4.65926 4.68840 4.78547 4.88018 4.89952 4.94504 4.99789 5.01753 5.04744 5.11534 5.23388 5.27674 5.34305 5.42425 5.45066 5.53133 5.55586 6.12290 6.15107 6.25837 6.51104 7.07050 7.31361 8.07824 8.32031 9.26563 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.002126 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.118458 B =13169.542101 C =15274.811199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.111 4.111 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.697 5.697 18 C 0.601 3.399 19 O -0.560 6.560 20 C 0.035 3.965 21 C -0.255 4.255 22 C 0.270 3.730 23 N -0.386 5.386 24 N -0.254 5.254 25 C 0.110 3.890 26 C -0.164 4.164 27 C 0.035 3.965 28 O -0.298 6.298 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.413 0.587 43 H 0.161 0.839 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -1.146 -30.752 33.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.384 4.384 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.348 5.348 18 C 0.385 3.615 19 O -0.436 6.436 20 C -0.131 4.131 21 C -0.285 4.285 22 C 0.103 3.897 23 N -0.185 5.185 24 N -0.085 5.085 25 C -0.008 4.008 26 C -0.202 4.202 27 C -0.039 4.039 28 O -0.206 6.206 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.206 0.794 41 H 0.062 0.938 42 H 0.250 0.750 43 H 0.179 0.821 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.168 0.832 48 H 0.168 0.832 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.663 -1.259 -30.443 32.996 hybrid contribution 0.973 -0.021 0.216 0.997 sum -11.690 -1.280 -30.227 32.434 Atomic orbital electron populations 1.22128 0.93878 1.02927 1.02635 1.21137 0.94846 0.96978 0.83251 0.90510 1.21853 0.94636 1.01966 0.96899 1.21437 0.95946 1.00312 0.96782 1.21587 0.93682 1.00894 0.98746 1.20849 0.94325 0.94271 0.88385 1.42620 1.04541 1.65339 1.26637 1.19616 0.85322 1.27909 1.05533 0.90995 1.25629 1.02395 1.01130 0.97747 1.69808 1.34797 1.41779 1.15575 0.85166 0.79669 0.77684 0.76971 1.20381 1.21752 1.20288 1.45971 1.65418 1.14761 1.08660 1.16987 0.77143 0.85341 0.81998 1.90778 1.51684 1.16198 1.84968 1.21889 1.03713 0.92268 0.95229 1.20301 1.16676 1.00924 0.90625 1.19394 0.98733 0.87273 0.84344 1.49675 1.52552 1.09938 1.06312 1.77476 1.19519 1.14941 0.96564 1.22535 1.02527 0.81680 0.94074 1.22676 1.04847 1.00264 0.92395 1.23594 0.93851 0.83887 1.02573 1.86675 1.69662 1.47775 1.16460 0.89832 0.93619 0.91312 0.88760 0.89961 0.92257 0.92272 0.92049 0.91980 0.96783 0.96837 0.79361 0.93842 0.75002 0.82109 0.86510 0.87566 0.89485 0.83207 0.83223 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.88 2.57 44.99 0.12 2.99 16 3 H 0.08 1.83 7.58 -2.38 -0.02 1.82 16 4 C -0.12 -2.21 4.75 30.60 0.15 -2.06 16 5 C -0.11 -2.68 5.10 30.60 0.16 -2.52 16 6 C -0.11 -3.57 5.33 30.59 0.16 -3.41 16 7 C 0.15 6.27 6.26 86.38 0.54 6.81 16 8 N -0.75 -40.12 5.60 -343.46 -1.92 -42.04 16 9 C -0.25 -14.73 9.99 84.03 0.84 -13.89 16 10 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 12 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 13 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 N -0.70 -15.33 4.53 -445.51 -2.02 -17.35 16 18 C 0.60 16.31 7.79 86.75 0.68 16.99 16 19 O -0.56 -18.36 16.57 -3.94 -0.07 -18.42 16 20 C 0.04 0.91 7.10 42.36 0.30 1.21 16 21 C -0.26 -6.32 10.58 22.24 0.24 -6.09 16 22 C 0.27 5.53 7.57 83.20 0.63 6.16 16 23 N -0.39 -7.09 4.08 -457.15 -1.87 -8.96 16 24 N -0.25 -5.92 12.32 -48.14 -0.59 -6.51 16 25 C 0.11 0.89 7.41 86.51 0.64 1.53 16 26 C -0.16 -0.38 6.16 30.85 0.19 -0.19 16 27 C 0.03 0.19 7.00 72.06 0.50 0.69 16 28 O -0.30 -4.74 10.65 -93.93 -1.00 -5.74 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.52 7.75 -2.38 -0.02 1.50 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.37 20.99 7.67 -92.70 -0.71 20.28 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.41 8.10 8.30 -92.70 -0.77 7.33 16 43 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 44 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 47 H 0.15 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -79.08 406.05 0.61 -78.48 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.52 Total: 29.63 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.29 Total: 2.08 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -6.12 Total: -135.10 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.07 Total: -24.16 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -79.08 0.61 -78.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171766621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.955 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds