Wall clock time and date at job start Tue Mar 31 2020 20:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.47371 * 15.00391 * 20 18 17 22 22 F 1.39898 * 109.47339 * 254.99808 * 20 18 17 23 23 C 1.53002 * 109.46961 * 135.00033 * 20 18 17 24 24 C 1.50694 * 109.47353 * 184.99966 * 23 20 18 25 25 C 1.38245 * 119.99855 * 269.72942 * 24 23 20 26 26 C 1.38231 * 119.99880 * 179.76884 * 25 24 23 27 27 C 1.38233 * 119.99835 * 0.49837 * 26 25 24 28 28 C 1.38232 * 120.00493 * 359.75125 * 27 26 25 29 29 C 1.38232 * 120.00176 * 90.00090 * 24 23 20 30 30 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 32 32 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 33 33 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 34 34 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 36 36 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 37 37 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 38 38 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 39 39 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 40 40 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 41 41 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 43 43 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 44 44 H 1.09003 * 109.46924 * 304.99811 * 23 20 18 45 45 H 1.09001 * 109.47201 * 64.99583 * 23 20 18 46 46 H 1.08000 * 119.99449 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.00380 * 180.22934 * 26 25 24 48 48 H 1.08004 * 119.99649 * 179.72638 * 27 26 25 49 49 H 1.08001 * 120.00355 * 179.97438 * 28 27 26 50 50 H 1.07993 * 120.00125 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.4619 -1.9269 4.5327 15 1 9.9816 -2.0087 6.9085 16 1 10.1821 -4.0658 5.6401 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8590 1.1588 -2.4115 20 6 2.6499 -0.7283 -3.5876 21 1 2.6031 -1.8058 -3.4298 22 9 3.9737 -0.3504 -3.8359 23 6 1.7781 -0.3502 -4.7868 24 6 2.2029 -1.1527 -5.9895 25 6 3.1742 -0.6602 -6.8411 26 6 3.5672 -1.3984 -7.9417 27 6 2.9817 -2.6244 -8.1965 28 6 2.0068 -3.1146 -7.3479 29 6 1.6174 -2.3786 -6.2444 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7518 -1.7716 1.2054 34 1 1.6055 -0.2619 2.1369 35 1 3.8533 0.4369 1.3573 36 1 3.9995 -1.0727 0.4257 37 1 3.6403 -0.8743 3.4506 38 1 3.7866 -2.3844 2.5197 39 1 6.0347 -1.6851 1.7403 40 1 5.8876 -0.1752 2.6713 41 1 5.4606 -2.3463 4.4258 42 1 7.3648 -3.6469 6.8362 43 1 2.2490 -1.6317 -1.1527 44 1 0.7338 -0.5632 -4.5583 45 1 1.8940 0.7125 -4.9996 46 1 3.6282 0.2999 -6.6445 47 1 4.3286 -1.0154 -8.6050 48 1 3.2857 -3.1992 -9.0589 49 1 1.5491 -4.0723 -7.5472 50 1 0.8558 -2.7616 -5.5813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176711412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:51 Heat of formation + Delta-G solvation = -78.392270 kcal Electronic energy + Delta-G solvation = -27815.260489 eV Core-core repulsion = 23755.894633 eV Total energy + Delta-G solvation = -4059.365856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.16479 -40.16065 -39.54284 -37.11155 -35.31072 -34.14907 -33.31675 -31.76910 -31.26908 -30.42786 -29.47873 -27.48175 -25.38483 -24.16864 -22.96195 -22.33099 -21.60642 -20.96611 -20.85767 -20.67516 -18.24461 -17.13383 -17.11199 -16.96359 -16.53035 -15.85540 -15.43543 -15.29207 -14.99905 -14.92830 -14.76371 -14.42121 -13.97002 -13.79248 -13.55962 -13.42423 -13.23086 -13.11063 -13.00484 -12.97425 -12.88780 -12.47859 -12.36765 -11.80983 -11.68980 -11.54160 -11.43665 -11.36201 -11.28365 -11.03061 -10.81895 -10.72766 -10.42055 -10.32185 -10.09018 -9.96149 -9.67049 -9.39563 -9.29632 -9.11748 -8.85224 -6.89121 -5.74574 -3.02856 0.91019 1.02786 2.10276 2.63864 3.37938 3.44703 3.50278 3.52737 3.98258 4.15058 4.23746 4.38533 4.45498 4.54132 4.63209 4.64536 4.67204 4.76492 4.82505 4.92338 5.11603 5.12187 5.19943 5.33072 5.34168 5.38942 5.39444 5.52818 5.58320 5.63142 5.64880 5.67442 5.74008 5.83233 5.89894 6.05790 6.06936 6.12813 6.14492 6.20664 6.29546 6.30521 6.38375 6.46481 6.61109 6.90335 6.94111 7.06807 7.72826 7.75495 8.44903 9.55680 10.14825 10.49421 11.48609 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.001884 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.598922 B =14857.588133 C =16501.272788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.712 5.712 18 C 0.494 3.506 19 O -0.521 6.521 20 C 0.089 3.911 21 H 0.100 0.900 22 F -0.184 7.184 23 C -0.096 4.096 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.403 0.597 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 2.410 -27.326 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.364 5.364 18 C 0.277 3.723 19 O -0.396 6.396 20 C 0.050 3.950 21 H 0.118 0.882 22 F -0.165 7.165 23 C -0.134 4.134 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.137 4.137 27 C -0.138 4.138 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.238 0.762 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.711 3.320 -27.367 32.767 hybrid contribution 1.076 -0.750 0.517 1.410 sum -16.635 2.569 -26.850 31.690 Atomic orbital electron populations 1.22173 0.95089 1.02205 1.02647 1.21142 0.93910 0.97864 0.83672 0.89133 1.21946 0.96979 1.00960 0.96599 1.21536 0.93856 1.01218 0.98742 1.21722 0.97302 1.00243 0.97037 1.20653 0.90982 0.95374 0.90571 1.42394 1.05349 1.65028 1.25120 1.19309 0.83933 1.28243 1.05378 0.91159 1.24755 0.97768 1.01015 0.97734 1.69674 1.32672 1.40946 1.15099 0.86102 0.85057 0.77213 0.77768 1.20546 1.21863 1.21867 1.46200 1.66328 1.14340 1.09534 1.20893 0.78705 0.87794 0.84907 1.90736 1.48689 1.15441 1.84743 1.21548 0.79383 1.00370 0.93730 0.88225 1.92919 1.35406 1.93188 1.95000 1.21027 0.99632 1.01891 0.90829 1.19681 0.97592 0.95349 0.96411 1.21138 0.96423 1.00184 0.94310 1.21190 0.99889 0.95006 0.97609 1.21207 0.96827 0.96183 0.99589 1.21149 0.97761 0.99872 0.95062 1.21069 1.00067 0.94245 0.97869 0.92348 0.91282 0.92266 0.91223 0.90009 0.91923 0.92120 0.92028 0.92115 0.96584 0.96550 0.78363 0.93612 0.76158 0.88777 0.88374 0.85742 0.85898 0.86061 0.85941 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.08 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 5 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.97 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.15 6.26 -4.05 -0.03 3.12 16 8 N -0.73 -19.30 5.60 -59.91 -0.34 -19.63 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 11 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 N -0.71 -5.99 4.53 -53.81 -0.24 -6.24 16 18 C 0.49 5.04 7.13 -10.98 -0.08 4.96 16 19 O -0.52 -7.17 16.27 5.56 0.09 -7.08 16 20 C 0.09 0.75 3.76 -27.88 -0.10 0.64 16 21 H 0.10 0.57 7.99 -51.93 -0.42 0.16 16 22 F -0.18 -2.09 16.76 2.25 0.04 -2.05 16 23 C -0.10 -0.72 4.83 -27.88 -0.13 -0.85 16 24 C -0.09 -0.70 5.00 -104.62 -0.52 -1.22 16 25 C -0.10 -0.83 9.56 -39.58 -0.38 -1.21 16 26 C -0.12 -0.87 10.05 -39.59 -0.40 -1.26 16 27 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 28 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 29 C -0.11 -0.77 9.70 -39.58 -0.38 -1.16 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.40 2.51 8.49 -40.82 -0.35 2.17 16 44 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.10 0.83 7.99 -51.93 -0.41 0.42 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 49 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 50 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 419.62 15.07 6.32 6.32 Total: -1.00 -34.82 419.62 -10.32 -45.14 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.59 Total: 5.59 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.30 Total: -11.80 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.15 Total: -53.94 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.82 -10.32 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176711412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.257 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds