Wall clock time and date at job start Tue Mar 31 2020 20:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.47371 * 15.00391 * 20 18 17 22 22 F 1.39898 * 109.47339 * 254.99808 * 20 18 17 23 23 C 1.53002 * 109.46961 * 135.00033 * 20 18 17 24 24 C 1.50694 * 109.47353 * 184.99966 * 23 20 18 25 25 C 1.38245 * 119.99855 * 269.72942 * 24 23 20 26 26 C 1.38231 * 119.99880 * 179.76884 * 25 24 23 27 27 C 1.38233 * 119.99835 * 0.49837 * 26 25 24 28 28 C 1.38232 * 120.00493 * 359.75125 * 27 26 25 29 29 C 1.38232 * 120.00176 * 90.00090 * 24 23 20 30 30 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 32 32 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 33 33 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 34 34 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 36 36 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 37 37 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 38 38 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 39 39 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 40 40 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 41 41 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 43 43 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 44 44 H 1.09003 * 109.46924 * 304.99811 * 23 20 18 45 45 H 1.09001 * 109.47201 * 64.99583 * 23 20 18 46 46 H 1.08000 * 119.99449 * 359.97438 * 25 24 23 47 47 H 1.07999 * 120.00380 * 180.22934 * 26 25 24 48 48 H 1.08004 * 119.99649 * 179.72638 * 27 26 25 49 49 H 1.08001 * 120.00355 * 179.97438 * 28 27 26 50 50 H 1.07993 * 120.00125 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.4619 -1.9269 4.5327 15 1 9.9816 -2.0087 6.9085 16 1 10.1821 -4.0658 5.6401 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8590 1.1588 -2.4115 20 6 2.6499 -0.7283 -3.5876 21 1 2.6031 -1.8058 -3.4298 22 9 3.9737 -0.3504 -3.8359 23 6 1.7781 -0.3502 -4.7868 24 6 2.2029 -1.1527 -5.9895 25 6 3.1742 -0.6602 -6.8411 26 6 3.5672 -1.3984 -7.9417 27 6 2.9817 -2.6244 -8.1965 28 6 2.0068 -3.1146 -7.3479 29 6 1.6174 -2.3786 -6.2444 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7518 -1.7716 1.2054 34 1 1.6055 -0.2619 2.1369 35 1 3.8533 0.4369 1.3573 36 1 3.9995 -1.0727 0.4257 37 1 3.6403 -0.8743 3.4506 38 1 3.7866 -2.3844 2.5197 39 1 6.0347 -1.6851 1.7403 40 1 5.8876 -0.1752 2.6713 41 1 5.4606 -2.3463 4.4258 42 1 7.3648 -3.6469 6.8362 43 1 2.2490 -1.6317 -1.1527 44 1 0.7338 -0.5632 -4.5583 45 1 1.8940 0.7125 -4.9996 46 1 3.6282 0.2999 -6.6445 47 1 4.3286 -1.0154 -8.6050 48 1 3.2857 -3.1992 -9.0589 49 1 1.5491 -4.0723 -7.5472 50 1 0.8558 -2.7616 -5.5813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176711412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:50 Heat of formation + Delta-G solvation = -98.429143 kcal Electronic energy + Delta-G solvation = -27816.129353 eV Core-core repulsion = 23755.894633 eV Total energy + Delta-G solvation = -4060.234720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.95284 -40.95211 -40.06705 -38.10839 -36.87461 -34.84879 -34.71251 -33.07062 -31.84453 -31.75996 -30.10813 -28.82900 -26.16932 -25.73473 -23.72872 -23.46310 -22.37612 -22.03966 -21.70530 -21.59415 -19.15064 -18.96142 -17.83521 -17.64770 -17.27546 -16.70283 -16.59142 -16.20736 -16.01870 -15.83882 -15.64977 -15.46081 -15.32579 -15.13276 -14.61020 -14.27845 -14.18924 -14.09481 -14.01525 -13.74418 -13.60421 -13.27473 -13.06901 -12.97655 -12.90632 -12.86802 -12.47845 -12.35756 -12.24735 -12.12311 -11.99018 -11.90178 -11.85013 -11.82688 -11.50609 -11.41476 -10.96363 -10.89592 -10.19054 -9.80970 -9.64907 -9.02847 -7.98147 -5.27383 0.38753 0.51298 1.30512 1.45838 1.46851 1.57277 1.93110 2.54033 2.85260 3.33208 3.35144 3.55094 3.60438 3.64731 3.83473 3.96005 4.01905 4.04360 4.12571 4.13335 4.18080 4.32065 4.34090 4.40077 4.55450 4.59413 4.63472 4.64020 4.76114 4.80193 4.84435 4.86686 4.91849 4.98258 5.00662 5.08800 5.12844 5.18255 5.26232 5.32333 5.39970 5.44887 5.51597 5.52860 5.57401 5.64415 5.67960 6.12225 6.25126 6.37095 7.03273 7.30724 8.07080 8.30847 9.25571 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.001884 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.598922 B =14857.588133 C =16501.272788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.290 1.290 17 N -0.701 5.701 18 C 0.493 3.507 19 O -0.563 6.563 20 C 0.089 3.911 21 H 0.133 0.867 22 F -0.203 7.203 23 C -0.090 4.090 24 C -0.100 4.100 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.417 0.583 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.139 0.861 49 H 0.144 0.856 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 1.062 -28.105 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.020 3.980 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.217 1.217 17 N -0.353 5.353 18 C 0.277 3.723 19 O -0.441 6.441 20 C 0.050 3.950 21 H 0.150 0.850 22 F -0.184 7.184 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.207 0.793 42 H 0.061 0.939 43 H 0.254 0.746 44 H 0.129 0.871 45 H 0.098 0.902 46 H 0.135 0.865 47 H 0.152 0.848 48 H 0.157 0.843 49 H 0.162 0.838 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.433 1.964 -28.173 33.725 hybrid contribution 1.288 -0.315 0.720 1.508 sum -17.145 1.650 -27.453 32.409 Atomic orbital electron populations 1.22108 0.93707 1.03203 1.02436 1.21061 0.94911 0.96684 0.83729 0.91500 1.21853 0.94447 1.02229 0.96878 1.21447 0.96073 1.00077 0.96939 1.21593 0.93592 1.01043 0.98716 1.20866 0.94418 0.94213 0.88455 1.42624 1.04523 1.65423 1.26542 1.19690 0.85351 1.27727 1.05407 0.90969 1.25614 1.02312 1.01188 0.97802 1.69820 1.34603 1.41961 1.15535 0.85040 0.79803 0.77135 0.77579 1.19244 1.21803 1.21653 1.46154 1.65384 1.14925 1.08866 1.21219 0.78063 0.87320 0.85703 1.90719 1.50655 1.17315 1.85437 1.21764 0.78306 1.01834 0.93138 0.84976 1.92877 1.36962 1.93512 1.95076 1.20964 1.00398 1.00841 0.90540 1.19755 0.97856 0.96000 0.96435 1.21266 0.97258 1.00412 0.95266 1.21410 1.00402 0.95464 0.97644 1.21512 0.96753 0.96040 1.00275 1.21490 0.97522 1.00679 0.94754 1.21350 1.00236 0.93703 0.98305 0.90679 0.90527 0.93508 0.89342 0.89347 0.92839 0.91743 0.92320 0.91651 0.96528 0.97071 0.79350 0.93867 0.74566 0.87057 0.90189 0.86462 0.84849 0.84271 0.83839 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 71.98 0.68 -1.45 16 2 C 0.14 2.33 2.57 44.99 0.12 2.44 16 3 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.12 -1.87 4.75 30.59 0.15 -1.72 16 5 C -0.11 -2.44 5.10 30.60 0.16 -2.28 16 6 C -0.11 -3.38 5.33 30.60 0.16 -3.22 16 7 C 0.15 6.04 6.26 86.38 0.54 6.58 16 8 N -0.75 -39.40 5.60 -343.46 -1.92 -41.32 16 9 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 10 H 0.07 4.05 7.83 -2.90 -0.02 4.03 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 13 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 17 N -0.70 -10.57 4.53 -442.54 -2.00 -12.58 16 18 C 0.49 9.71 7.13 87.66 0.63 10.34 16 19 O -0.56 -15.76 16.27 -3.02 -0.05 -15.81 16 20 C 0.09 1.40 3.76 29.85 0.11 1.51 16 21 H 0.13 1.19 7.99 -2.39 -0.02 1.17 16 22 F -0.20 -4.60 16.76 44.97 0.75 -3.85 16 23 C -0.09 -1.29 4.83 29.85 0.14 -1.15 16 24 C -0.10 -1.48 5.00 -19.87 -0.10 -1.58 16 25 C -0.12 -2.05 9.56 22.27 0.21 -1.84 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 27 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 28 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 29 C -0.12 -1.37 9.70 22.27 0.22 -1.15 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.42 7.75 -2.39 -0.02 1.41 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.37 20.62 7.67 -92.70 -0.71 19.91 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.42 4.04 8.49 -92.71 -0.79 3.25 16 44 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 45 H 0.08 1.44 7.99 -2.39 -0.02 1.42 16 46 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 48 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 49 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 50 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -75.53 419.62 3.50 -72.02 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.58 Total: 27.66 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.99 Total: -15.34 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.65 Total: -113.59 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.81 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.75 Total: -3.85 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.53 3.50 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176711412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.404 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds