Wall clock time and date at job start Tue Mar 31 2020 20:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47411 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99721 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00196 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47001 * 59.99857 * 13 11 9 15 15 H 1.48493 * 109.47211 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47124 * 299.99989 * 13 11 9 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 H 1.08998 * 109.46768 * 345.00598 * 20 18 17 22 22 F 1.39900 * 109.47021 * 104.99882 * 20 18 17 23 23 C 1.52995 * 109.47311 * 225.00598 * 20 18 17 24 24 C 1.50696 * 109.47004 * 175.00121 * 23 20 18 25 25 C 1.38239 * 119.99936 * 269.72224 * 24 23 20 26 26 C 1.38231 * 120.00333 * 179.76915 * 25 24 23 27 27 C 1.38239 * 119.99966 * 0.50509 * 26 25 24 28 28 C 1.38237 * 119.99531 * 359.74573 * 27 26 25 29 29 C 1.38230 * 120.00204 * 0.02562 * 28 27 26 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 33 33 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 34 34 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 35 35 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 36 36 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 37 37 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 38 38 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 39 39 H 1.08997 * 109.47193 * 299.99893 * 7 6 5 40 40 H 1.08998 * 109.46968 * 60.00156 * 7 6 5 41 41 H 0.96995 * 119.99983 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00102 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 44 44 H 1.09004 * 109.46910 * 294.99673 * 23 20 18 45 45 H 1.09000 * 109.47353 * 54.99486 * 23 20 18 46 46 H 1.08001 * 119.99583 * 359.97438 * 25 24 23 47 47 H 1.07998 * 120.00480 * 180.23277 * 26 25 24 48 48 H 1.07993 * 120.00201 * 179.72926 * 27 26 25 49 49 H 1.08002 * 119.99812 * 179.97438 * 28 27 26 50 50 H 1.08007 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 6 5.5995 -1.2254 -2.6281 8 7 6.0878 -1.9161 -3.8243 9 6 7.4299 -1.9524 -4.0939 10 1 8.1284 -1.4715 -3.4250 11 6 7.8926 -2.6063 -5.2276 12 7 7.0414 -3.1919 -6.0430 13 14 9.7233 -2.6552 -5.5959 14 1 10.4352 -3.3266 -4.4788 15 1 9.9551 -3.4092 -6.8540 16 1 10.2349 -1.2695 -5.7472 17 7 2.0183 -0.6906 1.1962 18 6 2.1523 -0.0169 2.3557 19 8 1.8638 1.1599 2.4102 20 6 2.6605 -0.7257 3.5847 21 1 2.6130 -1.8034 3.4283 22 9 3.9856 -0.3477 3.8265 23 6 1.7942 -0.3462 4.7873 24 6 2.2244 -1.1473 5.9890 25 6 1.6358 -2.3704 6.2511 26 6 2.0337 -3.1075 7.3507 27 6 3.0128 -2.6168 8.1942 28 6 3.5977 -1.3913 7.9351 29 6 3.2031 -0.6564 6.8328 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.7863 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8875 -0.1751 -2.6715 40 1 6.0345 -1.6850 -1.7406 41 1 5.4605 -2.3476 -4.4251 42 1 7.3647 -3.6492 -6.8350 43 1 2.2491 -1.6318 1.1526 44 1 1.9113 0.7168 4.9984 45 1 0.7489 -0.5592 4.5637 46 1 0.8675 -2.7515 5.5948 47 1 1.5766 -4.0647 7.5534 48 1 3.3206 -3.1906 9.0558 49 1 4.3623 -1.0077 8.5943 50 1 3.6598 0.3012 6.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176711416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:01 Heat of formation + Delta-G solvation = -78.202942 kcal Electronic energy + Delta-G solvation = -27817.606794 eV Core-core repulsion = 23758.249148 eV Total energy + Delta-G solvation = -4059.357646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.16363 -40.15918 -39.54205 -37.10998 -35.30699 -34.14775 -33.31342 -31.76770 -31.26809 -30.42583 -29.47819 -27.47852 -25.38316 -24.16323 -22.96029 -22.32676 -21.60493 -20.96497 -20.85760 -20.67288 -18.24358 -17.13188 -17.11131 -16.95941 -16.52843 -15.85598 -15.43496 -15.28926 -14.99732 -14.92613 -14.76008 -14.42218 -13.96834 -13.79123 -13.55897 -13.42526 -13.22579 -13.10649 -13.00067 -12.97207 -12.88824 -12.47740 -12.36759 -11.80555 -11.68777 -11.54000 -11.43570 -11.36090 -11.28072 -11.02500 -10.78723 -10.72327 -10.44768 -10.31681 -10.09126 -10.00205 -9.65920 -9.39486 -9.29561 -9.11628 -8.83883 -6.88919 -5.73887 -3.02239 0.91096 1.02919 2.10324 2.63981 3.38053 3.46135 3.49916 3.51407 3.98346 4.15193 4.23842 4.38629 4.45637 4.54282 4.63318 4.64831 4.67317 4.76614 4.82651 4.92423 5.11721 5.12320 5.20044 5.33208 5.34287 5.39075 5.39564 5.52952 5.58547 5.63261 5.65029 5.67539 5.74145 5.83360 5.90004 6.05922 6.07057 6.12926 6.14575 6.20781 6.29746 6.30668 6.38710 6.46697 6.61212 6.90584 6.94393 7.06885 7.72208 7.75570 8.45564 9.56175 10.15318 10.50029 11.49133 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.001887 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.217153 B =14831.134685 C =16484.388114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.712 5.712 18 C 0.494 3.506 19 O -0.521 6.521 20 C 0.089 3.911 21 H 0.100 0.900 22 F -0.184 7.184 23 C -0.096 4.096 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.103 4.103 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 2.388 27.260 32.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.364 5.364 18 C 0.277 3.723 19 O -0.396 6.396 20 C 0.050 3.950 21 H 0.118 0.882 22 F -0.165 7.165 23 C -0.134 4.134 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.121 4.121 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.668 3.286 27.286 32.672 hybrid contribution 1.091 -0.735 -0.498 1.406 sum -16.578 2.551 26.788 31.606 Atomic orbital electron populations 1.22173 0.95083 1.02205 1.02642 1.21142 0.93919 0.97860 0.83669 0.89131 1.21949 0.96978 1.00963 0.96602 1.21534 0.93856 1.01217 0.98745 1.21722 0.97307 1.00241 0.97031 1.20651 0.90978 0.95362 0.90586 1.42376 1.05321 1.64973 1.25197 1.19216 0.83937 1.28422 1.05447 0.91275 1.24752 0.97755 1.00992 0.97703 1.69653 1.32851 1.40772 1.15137 0.86245 0.85095 0.77482 0.77254 1.21273 1.21676 1.21266 1.46197 1.66287 1.14287 1.09624 1.20895 0.78726 0.87783 0.84900 1.90738 1.48761 1.15454 1.84663 1.21547 0.79340 1.00377 0.93765 0.88226 1.92919 1.35289 1.93188 1.95116 1.21026 0.99659 1.01896 0.90794 1.19679 0.97521 0.95390 0.96445 1.21070 1.00044 0.94255 0.97879 1.21148 0.97719 0.99855 0.95125 1.21208 0.96836 0.96167 0.99593 1.21191 0.99907 0.95031 0.97569 1.21136 0.96396 1.00197 0.94324 0.92347 0.92268 0.91286 0.91222 0.90009 0.91925 0.92126 0.92116 0.92031 0.96556 0.96597 0.78360 0.93512 0.76157 0.88375 0.88775 0.85937 0.85943 0.86060 0.85899 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.49 37.16 0.35 -0.92 16 2 C 0.14 1.25 2.58 -67.93 -0.17 1.08 16 3 H 0.09 1.01 7.57 -51.93 -0.39 0.62 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.30 16 5 C -0.12 -1.41 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 8 N -0.73 -19.31 5.60 -59.91 -0.34 -19.64 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.79 13.06 55.49 0.72 -28.07 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 N -0.71 -6.00 4.53 -53.81 -0.24 -6.24 16 18 C 0.49 5.04 7.14 -10.98 -0.08 4.96 16 19 O -0.52 -7.18 16.27 5.55 0.09 -7.09 16 20 C 0.09 0.75 3.76 -27.88 -0.10 0.64 16 21 H 0.10 0.57 7.99 -51.93 -0.42 0.16 16 22 F -0.18 -2.09 16.75 2.25 0.04 -2.05 16 23 C -0.10 -0.72 4.83 -27.89 -0.13 -0.85 16 24 C -0.09 -0.70 5.00 -104.63 -0.52 -1.22 16 25 C -0.11 -0.78 9.70 -39.58 -0.38 -1.16 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 29 C -0.10 -0.83 9.55 -39.59 -0.38 -1.21 16 30 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.40 2.52 8.49 -40.82 -0.35 2.17 16 44 H 0.10 0.84 7.99 -51.93 -0.42 0.42 16 45 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 46 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 47 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 419.60 15.07 6.32 6.32 Total: -1.00 -34.76 419.60 -10.32 -45.08 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.59 Total: 5.69 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.30 Total: -11.83 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.15 Total: -53.95 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.09 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.76 -10.32 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176711416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.122 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds