Wall clock time and date at job start Tue Mar 31 2020 20:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47411 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99721 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00196 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47001 * 59.99857 * 13 11 9 15 15 H 1.48493 * 109.47211 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47124 * 299.99989 * 13 11 9 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 H 1.08998 * 109.46768 * 345.00598 * 20 18 17 22 22 F 1.39900 * 109.47021 * 104.99882 * 20 18 17 23 23 C 1.52995 * 109.47311 * 225.00598 * 20 18 17 24 24 C 1.50696 * 109.47004 * 175.00121 * 23 20 18 25 25 C 1.38239 * 119.99936 * 269.72224 * 24 23 20 26 26 C 1.38231 * 120.00333 * 179.76915 * 25 24 23 27 27 C 1.38239 * 119.99966 * 0.50509 * 26 25 24 28 28 C 1.38237 * 119.99531 * 359.74573 * 27 26 25 29 29 C 1.38230 * 120.00204 * 0.02562 * 28 27 26 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 33 33 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 34 34 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 35 35 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 36 36 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 37 37 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 38 38 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 39 39 H 1.08997 * 109.47193 * 299.99893 * 7 6 5 40 40 H 1.08998 * 109.46968 * 60.00156 * 7 6 5 41 41 H 0.96995 * 119.99983 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00102 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 44 44 H 1.09004 * 109.46910 * 294.99673 * 23 20 18 45 45 H 1.09000 * 109.47353 * 54.99486 * 23 20 18 46 46 H 1.08001 * 119.99583 * 359.97438 * 25 24 23 47 47 H 1.07998 * 120.00480 * 180.23277 * 26 25 24 48 48 H 1.07993 * 120.00201 * 179.72926 * 27 26 25 49 49 H 1.08002 * 119.99812 * 179.97438 * 28 27 26 50 50 H 1.08007 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 6 5.5995 -1.2254 -2.6281 8 7 6.0878 -1.9161 -3.8243 9 6 7.4299 -1.9524 -4.0939 10 1 8.1284 -1.4715 -3.4250 11 6 7.8926 -2.6063 -5.2276 12 7 7.0414 -3.1919 -6.0430 13 14 9.7233 -2.6552 -5.5959 14 1 10.4352 -3.3266 -4.4788 15 1 9.9551 -3.4092 -6.8540 16 1 10.2349 -1.2695 -5.7472 17 7 2.0183 -0.6906 1.1962 18 6 2.1523 -0.0169 2.3557 19 8 1.8638 1.1599 2.4102 20 6 2.6605 -0.7257 3.5847 21 1 2.6130 -1.8034 3.4283 22 9 3.9856 -0.3477 3.8265 23 6 1.7942 -0.3462 4.7873 24 6 2.2244 -1.1473 5.9890 25 6 1.6358 -2.3704 6.2511 26 6 2.0337 -3.1075 7.3507 27 6 3.0128 -2.6168 8.1942 28 6 3.5977 -1.3913 7.9351 29 6 3.2031 -0.6564 6.8328 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.7863 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8875 -0.1751 -2.6715 40 1 6.0345 -1.6850 -1.7406 41 1 5.4605 -2.3476 -4.4251 42 1 7.3647 -3.6492 -6.8350 43 1 2.2491 -1.6318 1.1526 44 1 1.9113 0.7168 4.9984 45 1 0.7489 -0.5592 4.5637 46 1 0.8675 -2.7515 5.5948 47 1 1.5766 -4.0647 7.5534 48 1 3.3206 -3.1906 9.0558 49 1 4.3623 -1.0077 8.5943 50 1 3.6598 0.3012 6.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176711416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:00 Heat of formation + Delta-G solvation = -98.191552 kcal Electronic energy + Delta-G solvation = -27818.473565 eV Core-core repulsion = 23758.249148 eV Total energy + Delta-G solvation = -4060.224417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.95281 -40.95166 -40.06741 -38.10761 -36.87137 -34.84690 -34.71199 -33.06954 -31.84401 -31.76009 -30.10870 -28.82655 -26.16622 -25.73088 -23.72573 -23.46257 -22.37599 -22.03954 -21.70596 -21.59500 -19.14525 -18.96117 -17.83554 -17.64738 -17.27483 -16.69883 -16.59270 -16.20767 -16.01858 -15.83698 -15.64785 -15.46139 -15.31616 -15.13792 -14.60923 -14.27840 -14.18936 -14.09444 -14.01446 -13.74492 -13.60145 -13.26886 -13.06268 -12.97749 -12.88783 -12.84559 -12.46508 -12.35710 -12.24854 -12.20596 -11.99101 -11.89218 -11.85020 -11.82737 -11.50479 -11.41585 -10.94249 -10.89554 -10.19122 -9.81011 -9.64905 -9.02649 -7.97431 -5.26791 0.38724 0.51314 1.30448 1.45793 1.49283 1.55602 1.93122 2.54591 2.85263 3.33178 3.35454 3.55104 3.60455 3.64720 3.83462 3.96002 4.01896 4.04322 4.12600 4.13464 4.18079 4.32079 4.34072 4.40135 4.55469 4.59452 4.63475 4.64003 4.76125 4.80205 4.84427 4.86689 4.91843 4.98258 5.00630 5.08755 5.12842 5.18237 5.26222 5.32325 5.39960 5.44640 5.51501 5.52826 5.57414 5.64383 5.67965 6.12214 6.25369 6.37057 7.03234 7.31079 8.07504 8.31422 9.25804 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.001887 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.217153 B =14831.134685 C =16484.388114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.253 4.253 10 H 0.072 0.928 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.701 5.701 18 C 0.493 3.507 19 O -0.563 6.563 20 C 0.089 3.911 21 H 0.133 0.867 22 F -0.203 7.203 23 C -0.090 4.090 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.131 4.131 29 C -0.124 4.124 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.016 0.984 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.417 0.583 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.145 0.855 47 H 0.144 0.856 48 H 0.139 0.861 49 H 0.134 0.866 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.380 1.035 28.034 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.384 4.384 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.205 1.205 17 N -0.353 5.353 18 C 0.277 3.723 19 O -0.441 6.441 20 C 0.050 3.950 21 H 0.150 0.850 22 F -0.184 7.184 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.149 4.149 29 C -0.142 4.142 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.254 0.746 44 H 0.098 0.902 45 H 0.129 0.871 46 H 0.163 0.837 47 H 0.162 0.838 48 H 0.157 0.843 49 H 0.151 0.849 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.381 1.927 28.087 33.622 hybrid contribution 1.299 -0.296 -0.696 1.503 sum -17.082 1.631 27.391 32.322 Atomic orbital electron populations 1.22108 0.93698 1.03202 1.02433 1.21060 0.94922 0.96679 0.83725 0.91499 1.21856 0.94442 1.02233 0.96883 1.21446 0.96078 1.00074 0.96939 1.21594 0.93594 1.01041 0.98711 1.20864 0.94415 0.94195 0.88471 1.42606 1.04503 1.65376 1.26614 1.19617 0.85369 1.27942 1.05514 0.91004 1.25618 1.02335 1.01143 0.97757 1.69806 1.34751 1.41773 1.15530 0.85175 0.79743 0.77649 0.76977 1.20291 1.21768 1.20456 1.46151 1.65343 1.14870 1.08954 1.21222 0.78089 0.87308 0.85693 1.90721 1.50722 1.17326 1.85360 1.21762 0.78257 1.01842 0.93180 0.84981 1.92878 1.36847 1.93512 1.95190 1.20962 1.00430 1.00845 0.90501 1.19754 0.97778 0.96040 0.96475 1.21351 1.00232 0.93710 0.98298 1.21489 0.97481 1.00661 0.94815 1.21513 0.96766 0.96022 1.00275 1.21411 1.00424 0.95490 0.97599 1.21263 0.97229 1.00427 0.95281 0.90679 0.93507 0.90529 0.89342 0.89345 0.92843 0.91751 0.91654 0.92323 0.97084 0.96554 0.79351 0.93857 0.74566 0.90191 0.87052 0.83737 0.83839 0.84270 0.84851 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.49 71.98 0.68 -1.46 16 2 C 0.14 2.33 2.58 44.99 0.12 2.45 16 3 H 0.07 1.47 7.57 -2.39 -0.02 1.45 16 4 C -0.12 -1.87 4.75 30.59 0.15 -1.73 16 5 C -0.11 -2.45 5.10 30.59 0.16 -2.29 16 6 C -0.11 -3.39 5.33 30.59 0.16 -3.23 16 7 C 0.15 6.05 6.26 86.38 0.54 6.59 16 8 N -0.75 -39.44 5.60 -343.45 -1.92 -41.36 16 9 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 13 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 N -0.70 -10.59 4.53 -442.53 -2.00 -12.60 16 18 C 0.49 9.72 7.14 87.66 0.63 10.35 16 19 O -0.56 -15.78 16.27 -3.04 -0.05 -15.82 16 20 C 0.09 1.40 3.76 29.85 0.11 1.51 16 21 H 0.13 1.20 7.99 -2.39 -0.02 1.18 16 22 F -0.20 -4.61 16.75 44.97 0.75 -3.86 16 23 C -0.09 -1.29 4.83 29.85 0.14 -1.15 16 24 C -0.10 -1.48 5.00 -19.87 -0.10 -1.58 16 25 C -0.12 -1.37 9.70 22.27 0.22 -1.15 16 26 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 27 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 28 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 29 C -0.12 -2.05 9.55 22.27 0.21 -1.84 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.43 7.75 -2.39 -0.02 1.41 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.42 4.05 8.49 -92.71 -0.79 3.26 16 44 H 0.08 1.44 7.99 -2.38 -0.02 1.42 16 45 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 46 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 47 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 49 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -75.43 419.60 3.50 -71.93 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.58 Total: 27.97 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.99 Total: -15.47 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -3.65 Total: -113.61 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.82 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.75 Total: -3.86 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.43 3.50 -71.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176711416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.260 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds