Wall clock time and date at job start Tue Mar 31 2020 19:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46912 * 2 1 4 4 O 1.42900 * 109.47410 * 120.00236 * 2 1 3 5 5 C 1.42895 * 114.00028 * 270.00416 * 4 2 1 6 6 C 1.50697 * 109.47336 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99696 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00475 * 179.97438 * 6 5 4 9 9 C 1.47431 * 125.64342 * 359.68872 * 8 6 5 10 10 C 1.55129 * 104.71716 * 155.81787 * 9 8 6 11 11 C 1.55158 * 101.48887 * 37.29945 * 10 9 8 12 12 H 1.09002 * 110.72221 * 82.69242 * 11 10 9 13 13 N 1.46495 * 110.87181 * 205.89681 * 11 10 9 14 14 C 1.46505 * 120.00073 * 53.60577 * 13 11 10 15 15 C 1.36938 * 119.99825 * 233.60780 * 13 11 10 16 16 H 1.07998 * 120.00373 * 21.71716 * 15 13 11 17 17 C 1.38815 * 119.99783 * 201.71783 * 15 13 11 18 18 N 1.31616 * 119.99974 * 13.66942 * 17 15 13 19 19 Si 1.86796 * 120.00003 * 193.66744 * 17 15 13 20 20 H 1.48500 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47164 * 119.99873 * 19 17 15 22 22 H 1.48498 * 109.47397 * 239.99956 * 19 17 15 23 23 C 1.47013 * 125.65360 * 179.97438 * 8 6 5 24 24 C 1.50699 * 109.47192 * 240.00239 * 2 1 3 25 25 N 1.30501 * 125.65151 * 284.69166 * 24 2 1 26 26 C 1.34134 * 109.25670 * 179.89202 * 25 24 2 27 27 C 1.34668 * 108.01894 * 0.36967 * 26 25 24 28 28 N 1.35042 * 125.65154 * 104.99953 * 24 2 1 29 29 C 1.46500 * 126.39588 * 359.94104 * 28 24 2 30 30 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47343 * 299.99595 * 1 2 3 32 32 H 1.09005 * 109.47168 * 59.99879 * 1 2 3 33 33 H 1.09003 * 109.46682 * 299.99675 * 5 4 2 34 34 H 1.09000 * 109.47392 * 59.99554 * 5 4 2 35 35 H 1.09000 * 110.36645 * 274.74694 * 9 8 6 36 36 H 1.08998 * 110.36424 * 37.07513 * 9 8 6 37 37 H 1.09000 * 111.19432 * 279.18739 * 10 9 8 38 38 H 1.09001 * 110.93694 * 155.29274 * 10 9 8 39 39 H 1.09009 * 109.46551 * 94.46139 * 14 13 11 40 40 H 1.08997 * 109.46963 * 214.45793 * 14 13 11 41 41 H 1.08994 * 109.47174 * 334.45938 * 14 13 11 42 42 H 0.97009 * 119.99842 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.88535 * 300.44117 * 23 8 6 44 44 H 1.09007 * 109.88033 * 61.60260 * 23 8 6 45 45 H 1.07997 * 125.98652 * 180.11225 * 26 25 24 46 46 H 1.07999 * 126.58638 * 179.81321 * 27 26 25 47 47 H 1.09005 * 109.47234 * 90.00185 * 29 28 24 48 48 H 1.09008 * 109.47303 * 209.99913 * 29 28 24 49 49 H 1.08998 * 109.47425 * 330.00302 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 0.1828 2.2940 6 6 2.7002 -0.6285 3.4613 7 8 2.8734 -1.8228 3.3398 8 7 2.9553 -0.0271 4.6402 9 6 2.7956 1.4109 4.9233 10 6 2.5975 1.4905 6.4598 11 6 3.5638 0.3816 6.9538 12 1 4.5846 0.7589 7.0152 13 7 3.1307 -0.1492 8.2487 14 6 1.7632 -0.6476 8.4158 15 6 4.0041 -0.1797 9.3029 16 1 4.8615 0.4770 9.3131 17 6 3.7875 -1.0546 10.3587 18 7 2.9150 -2.0322 10.2347 19 14 4.7343 -0.8445 11.9551 20 1 5.6467 0.3214 11.8398 21 1 3.7802 -0.6173 13.0703 22 1 5.5281 -2.0702 12.2249 23 6 3.4443 -0.6953 5.8549 24 6 2.0323 -0.7103 -1.2305 25 7 2.0323 -2.0021 -1.4163 26 6 2.5496 -2.2753 -2.6234 27 6 2.8903 -1.1091 -3.2043 28 7 2.5624 -0.1161 -2.3211 29 6 2.7509 1.3228 -2.5218 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9319 0.9512 2.0450 34 1 1.2537 0.6545 2.5588 35 1 3.6900 1.9579 4.6250 36 1 1.9196 1.8041 4.4074 37 1 1.5679 1.2634 6.7367 38 1 2.8959 2.4671 6.8410 39 1 1.7467 -1.7252 8.2523 40 1 1.4174 -0.4280 9.4258 41 1 1.1082 -0.1604 7.6935 42 1 2.7633 -2.6434 10.9726 43 1 2.7372 -1.4647 6.1651 44 1 4.4208 -1.1411 5.6653 45 1 2.6750 -3.2585 -3.0522 46 1 3.3361 -0.9819 -4.1797 47 1 3.7334 1.6157 -2.1516 48 1 2.6794 1.5539 -3.5847 49 1 1.9801 1.8695 -1.9785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193744446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:14 Heat of formation + Delta-G solvation = 28.463798 kcal Electronic energy + Delta-G solvation = -29109.220570 eV Core-core repulsion = 25074.408302 eV Total energy + Delta-G solvation = -4034.812268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36005 -39.84054 -38.32476 -37.09124 -34.78400 -34.34954 -32.54836 -31.68521 -29.81187 -28.95685 -28.78901 -27.38309 -26.97669 -26.02698 -23.91600 -23.23615 -22.39143 -21.58989 -20.12045 -19.40526 -19.07987 -17.70178 -17.17560 -16.96882 -16.54598 -16.26627 -15.94367 -15.65159 -15.08497 -14.84837 -14.60456 -14.21603 -13.85100 -13.73596 -13.45731 -13.33491 -13.18516 -13.13762 -12.99423 -12.82663 -12.53965 -12.41934 -12.14931 -12.07721 -11.83855 -11.54470 -11.31935 -10.93612 -10.81510 -10.56656 -10.44952 -10.27608 -10.11829 -9.98420 -9.88615 -9.86960 -9.82174 -9.50603 -8.67208 -8.58268 -8.29109 -6.83597 -5.76384 -3.23144 1.67440 2.27787 2.80238 2.84505 3.05273 3.36575 3.43543 3.45811 3.74768 4.06369 4.23476 4.35188 4.46077 4.56858 4.64293 4.68321 4.78477 4.86660 4.88119 4.96253 5.03947 5.16584 5.25357 5.27980 5.31036 5.40811 5.46297 5.47379 5.58725 5.76265 5.87519 5.88621 5.97718 5.98264 6.32492 6.35928 6.47987 6.53070 6.64062 6.77098 6.83102 6.86447 6.92610 7.34472 7.71593 7.78454 7.80203 7.93926 8.33628 8.44730 9.17988 9.80634 10.28984 11.28194 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.001995 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.273381 B =14034.818410 C =14282.439943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.177 3.823 3 H 0.072 0.928 4 O -0.334 6.334 5 C 0.047 3.953 6 C 0.523 3.477 7 O -0.517 6.517 8 N -0.614 5.614 9 C 0.099 3.901 10 C -0.153 4.153 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.586 5.586 14 C 0.159 3.841 15 C -0.261 4.261 16 H 0.072 0.928 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.089 3.911 24 C 0.202 3.798 25 N -0.456 5.456 26 C -0.028 4.028 27 C -0.057 4.057 28 N -0.459 5.459 29 C 0.068 3.932 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.171 0.829 46 H 0.176 0.824 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 13.210 -26.359 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.251 6.251 5 C -0.033 4.033 6 C 0.309 3.691 7 O -0.392 6.392 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.193 4.193 11 C 0.062 3.938 12 H 0.097 0.903 13 N -0.306 5.306 14 C 0.015 3.985 15 C -0.391 4.391 16 H 0.089 0.911 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.737 3.263 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.036 4.036 24 C -0.060 4.060 25 N -0.174 5.174 26 C -0.177 4.177 27 C -0.190 4.190 28 N -0.143 5.143 29 C -0.075 4.075 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.537 11.734 -25.772 28.538 hybrid contribution 0.841 0.880 0.106 1.222 sum -2.697 12.614 -25.666 28.725 Atomic orbital electron populations 1.22246 0.93556 1.04517 1.02272 1.20021 0.94110 0.92960 0.81271 0.91001 1.88233 1.86332 1.32556 1.17972 1.22303 1.01107 0.92954 0.86919 1.19702 0.78951 0.87971 0.82461 1.90767 1.51208 1.14794 1.82404 1.48497 1.65930 1.09650 1.11002 1.22399 1.00482 0.81677 0.97877 1.23378 1.02644 1.01095 0.92186 1.21353 0.96556 0.90706 0.85169 0.90340 1.43951 1.09399 1.72103 1.05147 1.20820 0.83020 0.96994 0.97671 1.19263 1.06858 1.16147 0.96797 0.91066 1.25053 0.99124 0.95586 0.99799 1.70098 1.37260 1.16181 1.31157 0.86155 0.79142 0.77452 0.83572 1.20275 1.21593 1.21684 1.22964 0.99269 0.98132 0.83200 1.22815 1.03272 0.89224 0.90677 1.70316 1.18704 1.11804 1.16586 1.22436 1.04417 0.98301 0.92526 1.22715 1.09795 0.88219 0.98231 1.45266 1.46549 1.07637 1.14861 1.22094 1.03503 0.77780 1.04132 0.90255 0.91216 0.91641 0.90601 0.90213 0.91544 0.91477 0.90265 0.90370 0.95088 0.93592 0.97914 0.93626 0.90806 0.92178 0.81136 0.80673 0.90293 0.89294 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.51 37.15 0.35 -1.11 16 2 C 0.18 1.83 2.99 -27.89 -0.08 1.75 16 3 H 0.07 0.49 6.72 -51.93 -0.35 0.14 16 4 O -0.33 -4.92 9.50 -55.14 -0.52 -5.44 16 5 C 0.05 0.57 5.23 36.00 0.19 0.76 16 6 C 0.52 9.06 7.93 -10.99 -0.09 8.97 16 7 O -0.52 -11.72 16.83 -14.36 -0.24 -11.96 16 8 N -0.61 -10.03 3.32 -170.38 -0.57 -10.60 16 9 C 0.10 1.20 6.70 -2.41 -0.02 1.18 16 10 C -0.15 -2.28 6.61 -24.46 -0.16 -2.44 16 11 C 0.17 3.35 3.43 -66.10 -0.23 3.12 16 12 H 0.08 1.49 7.92 -51.93 -0.41 1.08 16 13 N -0.59 -14.18 2.93 -171.39 -0.50 -14.68 16 14 C 0.16 3.85 7.82 59.85 0.47 4.32 16 15 C -0.26 -6.97 9.63 -15.06 -0.14 -7.12 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 18 N -0.90 -26.24 10.67 55.49 0.59 -25.64 16 19 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.09 1.75 6.51 -3.07 -0.02 1.73 16 24 C 0.20 2.44 6.79 -155.42 -1.06 1.39 16 25 N -0.46 -6.81 11.25 -10.82 -0.12 -6.93 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 27 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 28 N -0.46 -4.01 3.15 -121.27 -0.38 -4.39 16 29 C 0.07 0.26 10.75 59.85 0.64 0.90 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.08 0.74 7.58 -51.93 -0.39 0.34 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 37 H 0.08 1.27 6.07 -51.93 -0.32 0.95 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.83 7.33 -51.92 -0.38 0.45 16 40 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 41 H 0.00 0.05 6.04 -51.93 -0.31 -0.26 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.69 7.11 -51.93 -0.37 1.32 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 46 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 49 H 0.09 0.20 7.33 -51.93 -0.38 -0.18 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -37.94 396.99 -9.28 -47.22 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.86 Total: -2.35 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -0.63 Total: 12.24 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.98 Total: -62.24 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.77 Total: -17.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.94 -9.28 -47.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.683 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds