Wall clock time and date at job start Tue Mar 31 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46912 * 2 1 4 4 O 1.42900 * 109.47410 * 120.00236 * 2 1 3 5 5 C 1.42895 * 114.00028 * 270.00416 * 4 2 1 6 6 C 1.50697 * 109.47336 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99696 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00475 * 179.97438 * 6 5 4 9 9 C 1.47431 * 125.64342 * 359.68872 * 8 6 5 10 10 C 1.55129 * 104.71716 * 155.81787 * 9 8 6 11 11 C 1.55158 * 101.48887 * 37.29945 * 10 9 8 12 12 H 1.09002 * 110.72221 * 82.69242 * 11 10 9 13 13 N 1.46495 * 110.87181 * 205.89681 * 11 10 9 14 14 C 1.46505 * 120.00073 * 53.60577 * 13 11 10 15 15 C 1.36938 * 119.99825 * 233.60780 * 13 11 10 16 16 H 1.07998 * 120.00373 * 21.71716 * 15 13 11 17 17 C 1.38815 * 119.99783 * 201.71783 * 15 13 11 18 18 N 1.31616 * 119.99974 * 13.66942 * 17 15 13 19 19 Si 1.86796 * 120.00003 * 193.66744 * 17 15 13 20 20 H 1.48500 * 109.47132 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47164 * 119.99873 * 19 17 15 22 22 H 1.48498 * 109.47397 * 239.99956 * 19 17 15 23 23 C 1.47013 * 125.65360 * 179.97438 * 8 6 5 24 24 C 1.50699 * 109.47192 * 240.00239 * 2 1 3 25 25 N 1.30501 * 125.65151 * 284.69166 * 24 2 1 26 26 C 1.34134 * 109.25670 * 179.89202 * 25 24 2 27 27 C 1.34668 * 108.01894 * 0.36967 * 26 25 24 28 28 N 1.35042 * 125.65154 * 104.99953 * 24 2 1 29 29 C 1.46500 * 126.39588 * 359.94104 * 28 24 2 30 30 H 1.09004 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47343 * 299.99595 * 1 2 3 32 32 H 1.09005 * 109.47168 * 59.99879 * 1 2 3 33 33 H 1.09003 * 109.46682 * 299.99675 * 5 4 2 34 34 H 1.09000 * 109.47392 * 59.99554 * 5 4 2 35 35 H 1.09000 * 110.36645 * 274.74694 * 9 8 6 36 36 H 1.08998 * 110.36424 * 37.07513 * 9 8 6 37 37 H 1.09000 * 111.19432 * 279.18739 * 10 9 8 38 38 H 1.09001 * 110.93694 * 155.29274 * 10 9 8 39 39 H 1.09009 * 109.46551 * 94.46139 * 14 13 11 40 40 H 1.08997 * 109.46963 * 214.45793 * 14 13 11 41 41 H 1.08994 * 109.47174 * 334.45938 * 14 13 11 42 42 H 0.97009 * 119.99842 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.88535 * 300.44117 * 23 8 6 44 44 H 1.09007 * 109.88033 * 61.60260 * 23 8 6 45 45 H 1.07997 * 125.98652 * 180.11225 * 26 25 24 46 46 H 1.07999 * 126.58638 * 179.81321 * 27 26 25 47 47 H 1.09005 * 109.47234 * 90.00185 * 29 28 24 48 48 H 1.09008 * 109.47303 * 209.99913 * 29 28 24 49 49 H 1.08998 * 109.47425 * 330.00302 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 0.1828 2.2940 6 6 2.7002 -0.6285 3.4613 7 8 2.8734 -1.8228 3.3398 8 7 2.9553 -0.0271 4.6402 9 6 2.7956 1.4109 4.9233 10 6 2.5975 1.4905 6.4598 11 6 3.5638 0.3816 6.9538 12 1 4.5846 0.7589 7.0152 13 7 3.1307 -0.1492 8.2487 14 6 1.7632 -0.6476 8.4158 15 6 4.0041 -0.1797 9.3029 16 1 4.8615 0.4770 9.3131 17 6 3.7875 -1.0546 10.3587 18 7 2.9150 -2.0322 10.2347 19 14 4.7343 -0.8445 11.9551 20 1 5.6467 0.3214 11.8398 21 1 3.7802 -0.6173 13.0703 22 1 5.5281 -2.0702 12.2249 23 6 3.4443 -0.6953 5.8549 24 6 2.0323 -0.7103 -1.2305 25 7 2.0323 -2.0021 -1.4163 26 6 2.5496 -2.2753 -2.6234 27 6 2.8903 -1.1091 -3.2043 28 7 2.5624 -0.1161 -2.3211 29 6 2.7509 1.3228 -2.5218 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9319 0.9512 2.0450 34 1 1.2537 0.6545 2.5588 35 1 3.6900 1.9579 4.6250 36 1 1.9196 1.8041 4.4074 37 1 1.5679 1.2634 6.7367 38 1 2.8959 2.4671 6.8410 39 1 1.7467 -1.7252 8.2523 40 1 1.4174 -0.4280 9.4258 41 1 1.1082 -0.1604 7.6935 42 1 2.7633 -2.6434 10.9726 43 1 2.7372 -1.4647 6.1651 44 1 4.4208 -1.1411 5.6653 45 1 2.6750 -3.2585 -3.0522 46 1 3.3361 -0.9819 -4.1797 47 1 3.7334 1.6157 -2.1516 48 1 2.6794 1.5539 -3.5847 49 1 1.9801 1.8695 -1.9785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193744446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:13 Heat of formation + Delta-G solvation = 2.030750 kcal Electronic energy + Delta-G solvation = -29110.366793 eV Core-core repulsion = 25074.408302 eV Total energy + Delta-G solvation = -4035.958491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.05318 -41.14416 -39.41397 -38.47107 -36.54334 -34.95059 -33.59853 -33.21088 -31.36320 -30.07281 -29.62394 -28.30367 -28.01145 -27.78822 -25.10385 -24.41885 -23.80796 -22.28615 -20.94529 -20.85294 -20.35825 -18.96328 -18.51797 -17.99931 -17.64015 -17.39044 -16.96528 -16.70211 -16.49571 -16.02210 -15.53855 -15.43194 -15.05791 -14.96369 -14.62106 -14.46155 -14.35054 -14.07227 -13.88466 -13.72216 -13.60167 -13.43973 -13.27653 -13.17121 -13.10842 -12.93402 -12.78813 -12.51344 -12.39349 -12.19594 -12.05727 -12.03767 -11.78959 -11.39540 -10.94467 -10.87888 -10.78277 -10.65062 -10.54952 -9.66984 -9.38802 -8.84011 -7.84208 -5.33393 0.98470 1.46947 1.48017 1.55159 1.56646 1.59265 1.92920 2.17649 2.50667 2.92083 3.28184 3.36827 3.50291 3.59739 3.83234 3.86326 3.96996 4.06900 4.07148 4.12077 4.14617 4.27108 4.31974 4.39565 4.44209 4.49088 4.55185 4.66732 4.69408 4.71047 4.75549 4.80788 4.83891 4.91340 5.05422 5.21043 5.21389 5.22834 5.32160 5.33395 5.46089 5.64362 5.70229 5.81361 6.00924 6.26293 6.30273 6.56028 7.11205 7.15338 7.21028 7.83436 8.27620 9.19308 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.001995 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.273381 B =14034.818410 C =14282.439943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.118 0.882 4 O -0.382 6.382 5 C 0.057 3.943 6 C 0.512 3.488 7 O -0.589 6.589 8 N -0.611 5.611 9 C 0.102 3.898 10 C -0.140 4.140 11 C 0.165 3.835 12 H 0.085 0.915 13 N -0.602 5.602 14 C 0.179 3.821 15 C -0.262 4.262 16 H 0.082 0.918 17 C -0.059 4.059 18 N -0.942 5.942 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.292 1.292 22 H -0.298 1.298 23 C 0.098 3.902 24 C 0.180 3.820 25 N -0.522 5.522 26 C -0.072 4.072 27 C -0.036 4.036 28 N -0.453 5.453 29 C 0.056 3.944 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.105 0.895 39 H -0.010 1.010 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.029 0.971 44 H 0.037 0.963 45 H 0.176 0.824 46 H 0.216 0.784 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 18.538 -28.637 34.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.114 3.886 3 H 0.135 0.865 4 O -0.300 6.300 5 C -0.022 4.022 6 C 0.301 3.699 7 O -0.469 6.469 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.179 4.179 11 C 0.056 3.944 12 H 0.103 0.897 13 N -0.323 5.323 14 C 0.034 3.966 15 C -0.392 4.392 16 H 0.100 0.900 17 C -0.254 4.254 18 N -0.589 5.589 19 Si 0.801 3.199 20 H -0.183 1.183 21 H -0.218 1.218 22 H -0.226 1.226 23 C -0.028 4.028 24 C -0.083 4.083 25 N -0.242 5.242 26 C -0.219 4.219 27 C -0.170 4.170 28 N -0.136 5.136 29 C -0.084 4.084 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.009 0.991 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.193 0.807 46 H 0.233 0.767 47 H 0.108 0.892 48 H 0.131 0.869 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.127 17.178 -28.092 33.076 hybrid contribution 0.756 -0.760 0.680 1.269 sum -2.371 16.418 -27.412 32.041 Atomic orbital electron populations 1.22220 0.92841 1.02724 1.04286 1.20363 0.94657 0.94416 0.79145 0.86463 1.88190 1.86983 1.35125 1.19706 1.22397 1.03820 0.91827 0.84156 1.20889 0.77564 0.87680 0.83718 1.90736 1.54225 1.18238 1.83685 1.48554 1.65029 1.11418 1.09651 1.22751 1.04291 0.78929 0.95928 1.23262 1.00349 1.00049 0.94271 1.21606 0.98386 0.91593 0.82817 0.89716 1.44164 1.09057 1.72337 1.06775 1.20465 0.84166 0.94910 0.97034 1.19693 1.06863 1.15325 0.97368 0.90043 1.25891 1.00608 0.95692 1.03176 1.70292 1.39461 1.17415 1.31689 0.85115 0.77859 0.77416 0.79498 1.18308 1.21845 1.22568 1.22518 0.97050 0.97650 0.85596 1.23150 1.04001 0.88938 0.92178 1.70199 1.20879 1.14423 1.18685 1.22770 1.06455 1.00085 0.92624 1.23275 1.07458 0.87256 0.99041 1.45545 1.44904 1.09540 1.13613 1.22524 1.04824 0.74784 1.06307 0.93974 0.89281 0.89393 0.86235 0.86350 0.88106 0.86817 0.91340 0.87676 0.99126 0.96037 0.94647 0.94385 0.95205 0.94410 0.80697 0.76728 0.89233 0.86898 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.51 71.98 0.68 -1.80 16 2 C 0.17 3.14 2.99 29.85 0.09 3.23 16 3 H 0.12 0.95 6.72 -2.39 -0.02 0.93 16 4 O -0.38 -10.73 9.50 -129.94 -1.23 -11.97 16 5 C 0.06 1.16 5.23 71.23 0.37 1.54 16 6 C 0.51 17.30 7.93 87.66 0.69 18.00 16 7 O -0.59 -28.05 16.83 15.99 0.27 -27.78 16 8 N -0.61 -18.93 3.32 -811.34 -2.70 -21.62 16 9 C 0.10 1.94 6.70 86.93 0.58 2.52 16 10 C -0.14 -3.65 6.61 32.06 0.21 -3.44 16 11 C 0.16 6.23 3.43 46.18 0.16 6.39 16 12 H 0.08 3.08 7.92 -2.39 -0.02 3.07 16 13 N -0.60 -29.53 2.93 -696.14 -2.04 -31.57 16 14 C 0.18 8.99 7.82 127.77 1.00 9.99 16 15 C -0.26 -14.11 9.63 84.03 0.81 -13.30 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.32 5.08 84.86 0.43 -2.88 16 18 N -0.94 -57.27 10.67 21.65 0.23 -57.04 16 19 Si 0.97 45.12 29.57 68.60 2.03 47.15 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 C 0.10 3.98 6.51 86.73 0.56 4.54 16 24 C 0.18 4.15 6.79 138.13 0.94 5.09 16 25 N -0.52 -16.25 11.25 -188.13 -2.12 -18.37 16 26 C -0.07 -1.69 11.87 83.52 0.99 -0.70 16 27 C -0.04 -0.56 11.58 83.09 0.96 0.40 16 28 N -0.45 -6.69 3.15 -537.60 -1.69 -8.39 16 29 C 0.06 0.17 10.75 127.77 1.37 1.54 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.97 7.87 -2.39 -0.02 0.95 16 32 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.12 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.12 1.50 7.58 -2.39 -0.02 1.49 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.24 7.48 -2.39 -0.02 1.22 16 37 H 0.07 1.96 6.07 -2.39 -0.01 1.95 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H -0.01 -0.56 7.33 -2.38 -0.02 -0.57 16 40 H 0.02 1.14 7.23 -2.39 -0.02 1.12 16 41 H 0.04 1.50 6.04 -2.39 -0.01 1.49 16 42 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 43 H 0.03 1.46 7.11 -2.38 -0.02 1.44 16 44 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 48 H 0.11 -0.17 8.14 -2.38 -0.02 -0.19 16 49 H 0.11 -0.09 7.33 -2.39 -0.02 -0.10 16 Total: -1.00 -94.59 396.99 3.54 -91.05 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.94 Total: 7.44 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 9.86 Total: 31.10 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -8.32 Total: -136.98 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.97 Total: -39.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -94.59 3.54 -91.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.076 kcal (2) G-P(sol) polarization free energy of solvation -94.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds