Wall clock time and date at job start Tue Mar 31 2020 19:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 O 1.42901 * 109.47232 * 120.00221 * 2 1 3 5 5 C 1.42901 * 113.99796 * 269.99835 * 4 2 1 6 6 C 1.50703 * 109.47216 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99623 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64759 * 0.02562 * 8 6 5 10 10 C 1.54909 * 104.83580 * 204.09291 * 9 8 6 11 11 C 1.55154 * 101.58222 * 322.99767 * 10 9 8 12 12 H 1.09002 * 110.71950 * 277.13647 * 11 10 9 13 13 N 1.46502 * 110.72176 * 154.03848 * 11 10 9 14 14 C 1.46504 * 119.99915 * 301.45428 * 13 11 10 15 15 C 1.36940 * 119.99838 * 121.45031 * 13 11 10 16 16 H 1.07993 * 120.00085 * 326.75152 * 15 13 11 17 17 C 1.38811 * 119.99487 * 146.75378 * 15 13 11 18 18 N 1.31620 * 120.00056 * 154.28725 * 17 15 13 19 19 Si 1.86803 * 120.00229 * 334.28346 * 17 15 13 20 20 H 1.48507 * 109.46736 * 95.39466 * 19 17 15 21 21 H 1.48499 * 109.46892 * 215.39032 * 19 17 15 22 22 H 1.48498 * 109.47166 * 335.39469 * 19 17 15 23 23 C 1.47019 * 125.64953 * 179.71951 * 8 6 5 24 24 C 1.50704 * 109.47107 * 240.00071 * 2 1 3 25 25 N 1.30496 * 125.64780 * 285.00317 * 24 2 1 26 26 C 1.34122 * 109.25489 * 179.97438 * 25 24 2 27 27 C 1.34671 * 108.02229 * 359.97438 * 26 25 24 28 28 N 1.35040 * 125.64808 * 104.99448 * 24 2 1 29 29 C 1.46495 * 126.40103 * 0.27161 * 28 24 2 30 30 H 1.08997 * 109.47269 * 59.99708 * 1 2 3 31 31 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46986 * 299.99910 * 1 2 3 33 33 H 1.09004 * 109.47442 * 299.99806 * 5 4 2 34 34 H 1.09003 * 109.47065 * 60.00045 * 5 4 2 35 35 H 1.09003 * 110.37213 * 322.93829 * 9 8 6 36 36 H 1.09002 * 110.36674 * 85.14916 * 9 8 6 37 37 H 1.09003 * 110.99808 * 81.06646 * 10 9 8 38 38 H 1.08996 * 111.00699 * 204.87883 * 10 9 8 39 39 H 1.08993 * 109.47172 * 94.77449 * 14 13 11 40 40 H 1.08999 * 109.46876 * 214.77725 * 14 13 11 41 41 H 1.08999 * 109.46671 * 334.77398 * 14 13 11 42 42 H 0.96993 * 120.00219 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.87861 * 298.38681 * 23 8 6 44 44 H 1.08999 * 109.88712 * 59.55122 * 23 8 6 45 45 H 1.08007 * 125.99222 * 180.02562 * 26 25 24 46 46 H 1.08002 * 126.59298 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.46864 * 269.71272 * 29 28 24 48 48 H 1.09009 * 109.47025 * 29.70560 * 29 28 24 49 49 H 1.08998 * 109.47830 * 149.70676 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6282 3.4610 7 8 2.8753 -1.8224 3.3394 8 7 2.9559 -0.0269 4.6400 9 6 2.7877 1.4096 4.9258 10 6 3.7479 1.6939 6.1077 11 6 3.6136 0.3906 6.9386 12 1 2.7344 0.4321 7.5817 13 7 4.8227 0.1544 7.7314 14 6 6.1214 0.0248 7.0658 15 6 4.7390 0.0547 9.0946 16 1 4.0047 0.6343 9.6343 17 6 5.5980 -0.7911 9.7827 18 7 5.8917 -0.5481 11.0425 19 14 6.3371 -2.2745 8.9208 20 1 7.6831 -1.9244 8.4000 21 1 6.4560 -3.3983 9.8841 22 1 5.4600 -2.6797 7.7931 23 6 3.4408 -0.6958 5.8561 24 6 2.0324 -0.7104 -1.2305 25 7 2.0271 -2.0017 -1.4186 26 6 2.5478 -2.2753 -2.6239 27 6 2.8883 -1.1091 -3.2051 28 7 2.5624 -0.1161 -2.3211 29 6 2.7569 1.3223 -2.5192 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9321 0.9513 2.0450 34 1 1.2538 0.6546 2.5588 35 1 3.0689 2.0047 4.0569 36 1 1.7576 1.6213 5.2124 37 1 4.7707 1.8294 5.7561 38 1 3.4161 2.5595 6.6810 39 1 6.6244 0.9917 7.0594 40 1 6.7339 -0.6998 7.6023 41 1 5.9719 -0.3139 6.0407 42 1 6.4916 -1.1393 11.5234 43 1 2.7139 -1.4381 6.1857 44 1 4.3996 -1.1751 5.6583 45 1 2.6716 -3.2584 -3.0536 46 1 3.3334 -0.9818 -4.1809 47 1 1.8706 1.7473 -2.9904 48 1 2.9214 1.8029 -1.5547 49 1 3.6234 1.4871 -3.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193744448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:19 Heat of formation + Delta-G solvation = 34.397496 kcal Electronic energy + Delta-G solvation = -29260.361335 eV Core-core repulsion = 25225.806372 eV Total energy + Delta-G solvation = -4034.554963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40150 -39.97606 -38.43691 -37.24688 -34.98213 -34.38849 -32.60637 -31.87413 -30.38057 -29.02577 -28.93420 -27.43093 -27.28458 -26.18893 -24.02951 -23.45301 -22.39714 -21.63275 -20.16117 -19.58932 -19.18867 -17.77489 -17.19593 -17.08226 -16.58002 -16.44173 -16.16527 -15.67848 -15.38451 -15.03942 -14.79945 -14.10595 -14.05424 -13.83633 -13.63853 -13.42577 -13.33256 -13.19389 -13.14064 -12.80215 -12.64322 -12.48931 -12.36120 -12.30252 -12.04445 -11.93267 -11.76851 -11.37259 -10.97221 -10.84724 -10.57235 -10.21639 -10.16148 -10.05536 -9.99115 -9.89805 -9.64549 -9.56322 -8.71363 -8.53029 -8.43030 -6.98664 -6.06638 -3.43680 1.63749 2.23098 2.72090 2.72773 2.98806 3.31141 3.48674 3.54950 3.66641 4.00711 4.18872 4.27752 4.49113 4.54706 4.58407 4.59724 4.73276 4.77364 4.80761 4.85614 4.91519 5.02971 5.12573 5.16446 5.23666 5.30769 5.35450 5.38666 5.42199 5.61470 5.70166 5.83475 5.83991 5.93142 6.09548 6.23574 6.25637 6.38490 6.41411 6.47307 6.62307 6.65549 6.71823 6.75540 6.85656 7.66193 7.89589 7.93391 8.27822 8.32000 8.88336 9.63955 10.01097 11.08484 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.002240 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.008093 B =12496.474348 C =12981.651771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.073 0.927 4 O -0.335 6.335 5 C 0.047 3.953 6 C 0.524 3.476 7 O -0.517 6.517 8 N -0.615 5.615 9 C 0.098 3.902 10 C -0.149 4.149 11 C 0.171 3.829 12 H 0.089 0.911 13 N -0.595 5.595 14 C 0.108 3.892 15 C -0.275 4.275 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.893 5.893 19 Si 0.878 3.122 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.085 3.915 24 C 0.202 3.798 25 N -0.457 5.457 26 C -0.028 4.028 27 C -0.057 4.057 28 N -0.458 5.458 29 C 0.068 3.932 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 9.950 -28.520 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.117 3.883 3 H 0.090 0.910 4 O -0.252 6.252 5 C -0.033 4.033 6 C 0.310 3.690 7 O -0.392 6.392 8 N -0.351 5.351 9 C -0.025 4.025 10 C -0.189 4.189 11 C 0.062 3.938 12 H 0.107 0.893 13 N -0.317 5.317 14 C -0.036 4.036 15 C -0.403 4.403 16 H 0.101 0.899 17 C -0.164 4.164 18 N -0.533 5.533 19 Si 0.708 3.292 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.039 4.039 24 C -0.060 4.060 25 N -0.175 5.175 26 C -0.177 4.177 27 C -0.189 4.189 28 N -0.143 5.143 29 C -0.075 4.075 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.189 0.811 46 H 0.194 0.806 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.281 8.565 -27.917 30.641 hybrid contribution 0.921 0.005 -1.165 1.485 sum -8.360 8.570 -29.082 31.449 Atomic orbital electron populations 1.22234 0.93489 1.04462 1.02307 1.20037 0.94146 0.92955 0.81206 0.90967 1.88230 1.86361 1.32575 1.18004 1.22294 1.01142 0.92928 0.86900 1.19727 0.78851 0.87970 0.82436 1.90768 1.51155 1.14848 1.82405 1.48471 1.65985 1.09832 1.10854 1.22392 1.00178 0.81103 0.98853 1.23305 0.99226 1.00605 0.95796 1.21510 0.91657 0.90179 0.90496 0.89305 1.44089 0.99905 1.84081 1.03586 1.21328 0.87996 0.98895 0.95356 1.18774 1.20921 1.21072 0.79563 0.89876 1.25374 0.98230 0.97735 0.95047 1.69896 1.35469 1.37276 1.10674 0.86983 0.78747 0.84188 0.79265 1.21422 1.22915 1.19399 1.22900 0.99696 0.97566 0.83768 1.22791 1.03348 0.89239 0.90662 1.70303 1.18726 1.11798 1.16663 1.22434 1.04379 0.98306 0.92560 1.22724 1.09840 0.88176 0.98167 1.45262 1.46547 1.07686 1.14778 1.22097 1.03544 0.77778 1.04063 0.91583 0.90295 0.91241 0.90541 0.90088 0.91399 0.91206 0.90716 0.89926 0.96028 0.94140 0.94581 0.92562 0.91606 0.91235 0.81122 0.80644 0.90251 0.89562 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.51 37.16 0.35 -1.00 16 2 C 0.18 1.74 3.10 -27.88 -0.09 1.66 16 3 H 0.07 0.46 6.38 -51.93 -0.33 0.13 16 4 O -0.34 -4.70 9.50 -55.14 -0.52 -5.23 16 5 C 0.05 0.54 5.23 36.01 0.19 0.73 16 6 C 0.52 8.57 7.93 -10.99 -0.09 8.48 16 7 O -0.52 -11.19 16.83 -14.36 -0.24 -11.44 16 8 N -0.61 -9.39 3.33 -170.51 -0.57 -9.96 16 9 C 0.10 1.10 6.69 -2.53 -0.02 1.08 16 10 C -0.15 -2.09 6.65 -24.58 -0.16 -2.25 16 11 C 0.17 3.14 3.42 -66.09 -0.23 2.91 16 12 H 0.09 1.63 7.95 -51.93 -0.41 1.21 16 13 N -0.59 -13.60 2.56 -171.38 -0.44 -14.04 16 14 C 0.11 2.35 8.43 59.85 0.50 2.86 16 15 C -0.28 -7.44 9.87 -15.06 -0.15 -7.59 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 18 N -0.89 -26.81 13.97 55.49 0.78 -26.04 16 19 Si 0.88 22.49 25.09 -169.99 -4.27 18.23 16 20 H -0.29 -7.14 6.64 56.52 0.38 -6.76 16 21 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 22 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 23 C 0.08 1.56 6.41 -3.06 -0.02 1.54 16 24 C 0.20 2.37 6.79 -155.42 -1.05 1.31 16 25 N -0.46 -6.66 11.25 -10.81 -0.12 -6.78 16 26 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 27 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 28 N -0.46 -3.90 3.15 -121.28 -0.38 -4.29 16 29 C 0.07 0.25 10.93 59.84 0.65 0.90 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 33 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 34 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.07 0.57 7.48 -51.93 -0.39 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.10 7.28 -51.93 -0.38 0.72 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.96 2.78 -51.93 -0.14 0.82 16 41 H 0.04 0.71 6.29 -51.93 -0.33 0.38 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.45 6.14 -51.93 -0.32 1.13 16 45 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 46 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.09 0.23 6.91 -51.92 -0.36 -0.13 16 49 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -38.53 392.58 -8.14 -46.67 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.69 Total: -3.44 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -0.60 Total: 10.40 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.74 Total: -61.10 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.77 Total: -16.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.27 Total: 18.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.53 -8.14 -46.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.066 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds