Wall clock time and date at job start Tue Mar 31 2020 19:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 O 1.42901 * 109.47232 * 120.00221 * 2 1 3 5 5 C 1.42901 * 113.99796 * 269.99835 * 4 2 1 6 6 C 1.50703 * 109.47216 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99623 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.47422 * 125.64759 * 0.02562 * 8 6 5 10 10 C 1.54909 * 104.83580 * 204.09291 * 9 8 6 11 11 C 1.55154 * 101.58222 * 322.99767 * 10 9 8 12 12 H 1.09002 * 110.71950 * 277.13647 * 11 10 9 13 13 N 1.46502 * 110.72176 * 154.03848 * 11 10 9 14 14 C 1.46504 * 119.99915 * 301.45428 * 13 11 10 15 15 C 1.36940 * 119.99838 * 121.45031 * 13 11 10 16 16 H 1.07993 * 120.00085 * 326.75152 * 15 13 11 17 17 C 1.38811 * 119.99487 * 146.75378 * 15 13 11 18 18 N 1.31620 * 120.00056 * 154.28725 * 17 15 13 19 19 Si 1.86803 * 120.00229 * 334.28346 * 17 15 13 20 20 H 1.48507 * 109.46736 * 95.39466 * 19 17 15 21 21 H 1.48499 * 109.46892 * 215.39032 * 19 17 15 22 22 H 1.48498 * 109.47166 * 335.39469 * 19 17 15 23 23 C 1.47019 * 125.64953 * 179.71951 * 8 6 5 24 24 C 1.50704 * 109.47107 * 240.00071 * 2 1 3 25 25 N 1.30496 * 125.64780 * 285.00317 * 24 2 1 26 26 C 1.34122 * 109.25489 * 179.97438 * 25 24 2 27 27 C 1.34671 * 108.02229 * 359.97438 * 26 25 24 28 28 N 1.35040 * 125.64808 * 104.99448 * 24 2 1 29 29 C 1.46495 * 126.40103 * 0.27161 * 28 24 2 30 30 H 1.08997 * 109.47269 * 59.99708 * 1 2 3 31 31 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46986 * 299.99910 * 1 2 3 33 33 H 1.09004 * 109.47442 * 299.99806 * 5 4 2 34 34 H 1.09003 * 109.47065 * 60.00045 * 5 4 2 35 35 H 1.09003 * 110.37213 * 322.93829 * 9 8 6 36 36 H 1.09002 * 110.36674 * 85.14916 * 9 8 6 37 37 H 1.09003 * 110.99808 * 81.06646 * 10 9 8 38 38 H 1.08996 * 111.00699 * 204.87883 * 10 9 8 39 39 H 1.08993 * 109.47172 * 94.77449 * 14 13 11 40 40 H 1.08999 * 109.46876 * 214.77725 * 14 13 11 41 41 H 1.08999 * 109.46671 * 334.77398 * 14 13 11 42 42 H 0.96993 * 120.00219 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.87861 * 298.38681 * 23 8 6 44 44 H 1.08999 * 109.88712 * 59.55122 * 23 8 6 45 45 H 1.08007 * 125.99222 * 180.02562 * 26 25 24 46 46 H 1.08002 * 126.59298 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.46864 * 269.71272 * 29 28 24 48 48 H 1.09009 * 109.47025 * 29.70560 * 29 28 24 49 49 H 1.08998 * 109.47830 * 149.70676 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6282 3.4610 7 8 2.8753 -1.8224 3.3394 8 7 2.9559 -0.0269 4.6400 9 6 2.7877 1.4096 4.9258 10 6 3.7479 1.6939 6.1077 11 6 3.6136 0.3906 6.9386 12 1 2.7344 0.4321 7.5817 13 7 4.8227 0.1544 7.7314 14 6 6.1214 0.0248 7.0658 15 6 4.7390 0.0547 9.0946 16 1 4.0047 0.6343 9.6343 17 6 5.5980 -0.7911 9.7827 18 7 5.8917 -0.5481 11.0425 19 14 6.3371 -2.2745 8.9208 20 1 7.6831 -1.9244 8.4000 21 1 6.4560 -3.3983 9.8841 22 1 5.4600 -2.6797 7.7931 23 6 3.4408 -0.6958 5.8561 24 6 2.0324 -0.7104 -1.2305 25 7 2.0271 -2.0017 -1.4186 26 6 2.5478 -2.2753 -2.6239 27 6 2.8883 -1.1091 -3.2051 28 7 2.5624 -0.1161 -2.3211 29 6 2.7569 1.3223 -2.5192 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9321 0.9513 2.0450 34 1 1.2538 0.6546 2.5588 35 1 3.0689 2.0047 4.0569 36 1 1.7576 1.6213 5.2124 37 1 4.7707 1.8294 5.7561 38 1 3.4161 2.5595 6.6810 39 1 6.6244 0.9917 7.0594 40 1 6.7339 -0.6998 7.6023 41 1 5.9719 -0.3139 6.0407 42 1 6.4916 -1.1393 11.5234 43 1 2.7139 -1.4381 6.1857 44 1 4.3996 -1.1751 5.6583 45 1 2.6716 -3.2584 -3.0536 46 1 3.3334 -0.9818 -4.1809 47 1 1.8706 1.7473 -2.9904 48 1 2.9214 1.8029 -1.5547 49 1 3.6234 1.4871 -3.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193744448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:18 Heat of formation + Delta-G solvation = 6.804493 kcal Electronic energy + Delta-G solvation = -29261.557857 eV Core-core repulsion = 25225.806372 eV Total energy + Delta-G solvation = -4035.751486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.06591 -41.19488 -39.47726 -38.52847 -36.64979 -34.96449 -33.86721 -33.28530 -31.81125 -30.14320 -29.63755 -28.50075 -28.03440 -27.80158 -25.29928 -24.45967 -23.73478 -22.30170 -21.03891 -20.85409 -20.38654 -19.05320 -18.55037 -18.02589 -17.78753 -17.51351 -17.23068 -16.80592 -16.41858 -16.31455 -15.67109 -15.38486 -15.12083 -14.90595 -14.71647 -14.57883 -14.39729 -14.32374 -14.13434 -13.76669 -13.75557 -13.52795 -13.46309 -13.43461 -13.27703 -13.11097 -12.94142 -12.61738 -12.39275 -12.37300 -12.08168 -12.02429 -11.61604 -11.49394 -10.95282 -10.90361 -10.80603 -10.63702 -10.55030 -9.69915 -9.40222 -8.89274 -8.26046 -5.57251 0.97781 1.23851 1.37924 1.46945 1.52453 1.54128 1.90534 2.16214 2.36057 2.88790 2.99434 3.28680 3.35928 3.48934 3.77403 3.80870 3.94894 4.00380 4.07691 4.09342 4.13409 4.22806 4.28790 4.33191 4.44667 4.46028 4.47997 4.53674 4.65739 4.67890 4.70496 4.71887 4.74720 4.83582 4.89130 4.95485 4.98352 5.18131 5.22564 5.28400 5.30908 5.39422 5.80081 5.87173 5.99537 6.13484 6.24898 6.51876 6.89696 7.11788 7.19499 7.57229 7.98392 8.93449 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.002240 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.008093 B =12496.474348 C =12981.651771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.173 3.827 3 H 0.117 0.883 4 O -0.382 6.382 5 C 0.055 3.945 6 C 0.514 3.486 7 O -0.587 6.587 8 N -0.611 5.611 9 C 0.102 3.898 10 C -0.138 4.138 11 C 0.163 3.837 12 H 0.085 0.915 13 N -0.609 5.609 14 C 0.110 3.890 15 C -0.256 4.256 16 H 0.061 0.939 17 C -0.014 4.014 18 N -0.937 5.937 19 Si 0.931 3.069 20 H -0.275 1.275 21 H -0.309 1.309 22 H -0.276 1.276 23 C 0.092 3.908 24 C 0.180 3.820 25 N -0.522 5.522 26 C -0.071 4.071 27 C -0.037 4.037 28 N -0.453 5.453 29 C 0.057 3.943 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.176 0.824 46 H 0.215 0.785 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 13.887 -31.799 36.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.134 0.866 4 O -0.300 6.300 5 C -0.024 4.024 6 C 0.304 3.696 7 O -0.466 6.466 8 N -0.346 5.346 9 C -0.020 4.020 10 C -0.177 4.177 11 C 0.056 3.944 12 H 0.103 0.897 13 N -0.332 5.332 14 C -0.034 4.034 15 C -0.385 4.385 16 H 0.079 0.921 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.762 3.238 20 H -0.203 1.203 21 H -0.238 1.238 22 H -0.201 1.201 23 C -0.034 4.034 24 C -0.082 4.082 25 N -0.241 5.241 26 C -0.219 4.219 27 C -0.171 4.171 28 N -0.137 5.137 29 C -0.084 4.084 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.193 0.807 46 H 0.232 0.768 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.883 12.584 -31.248 35.107 hybrid contribution 1.035 -1.148 -0.234 1.563 sum -8.848 11.436 -31.482 34.644 Atomic orbital electron populations 1.22205 0.92710 1.02736 1.04290 1.20375 0.94741 0.94334 0.79122 0.86571 1.88186 1.86990 1.35090 1.19698 1.22412 1.03901 0.91823 0.84218 1.20838 0.77525 0.87673 0.83570 1.90738 1.54143 1.18158 1.83597 1.48518 1.65113 1.11440 1.09575 1.22705 1.01121 0.78653 0.99473 1.23196 1.00198 0.98187 0.96120 1.21671 0.89715 0.92615 0.90447 0.89702 1.44188 1.01942 1.84412 1.02617 1.21316 0.87255 0.99071 0.95755 1.18765 1.18985 1.19169 0.81596 0.92120 1.25858 0.99832 0.99870 0.95579 1.69981 1.37527 1.38477 1.12120 0.86101 0.78569 0.81397 0.77702 1.20270 1.23802 1.20108 1.22495 0.97851 0.97330 0.85701 1.23161 1.03964 0.88957 0.92156 1.70190 1.20875 1.14371 1.18686 1.22766 1.06371 1.00048 0.92694 1.23269 1.07642 0.87261 0.98968 1.45545 1.44965 1.09545 1.13598 1.22516 1.05406 0.74825 1.05633 0.89574 0.93887 0.89142 0.86539 0.86035 0.86704 0.88294 0.91026 0.88103 0.94511 0.96357 0.92778 0.92720 0.93709 0.94109 0.80681 0.76826 0.88242 0.88093 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.51 71.98 0.68 -1.55 16 2 C 0.17 2.92 3.10 29.85 0.09 3.01 16 3 H 0.12 0.82 6.38 -2.39 -0.02 0.81 16 4 O -0.38 -10.03 9.50 -129.94 -1.23 -11.26 16 5 C 0.06 1.02 5.23 71.24 0.37 1.39 16 6 C 0.51 15.95 7.93 87.66 0.69 16.64 16 7 O -0.59 -26.07 16.83 15.99 0.27 -25.81 16 8 N -0.61 -17.14 3.33 -811.78 -2.70 -19.84 16 9 C 0.10 1.73 6.69 86.86 0.58 2.31 16 10 C -0.14 -3.32 6.65 31.99 0.21 -3.11 16 11 C 0.16 5.79 3.42 46.18 0.16 5.95 16 12 H 0.08 3.05 7.95 -2.39 -0.02 3.03 16 13 N -0.61 -27.58 2.56 -696.13 -1.79 -29.36 16 14 C 0.11 4.66 8.43 127.77 1.08 5.73 16 15 C -0.26 -14.00 9.87 84.03 0.83 -13.17 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C -0.01 -0.81 5.29 84.86 0.45 -0.37 16 18 N -0.94 -57.75 13.97 21.65 0.30 -57.44 16 19 Si 0.93 47.83 25.09 68.60 1.72 49.55 16 20 H -0.28 -13.48 6.64 99.48 0.66 -12.82 16 21 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 22 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 23 C 0.09 3.37 6.41 86.73 0.56 3.92 16 24 C 0.18 3.99 6.79 138.13 0.94 4.93 16 25 N -0.52 -15.69 11.25 -188.13 -2.12 -17.81 16 26 C -0.07 -1.63 11.87 83.52 0.99 -0.64 16 27 C -0.04 -0.56 11.58 83.09 0.96 0.40 16 28 N -0.45 -6.46 3.15 -537.61 -1.69 -8.16 16 29 C 0.06 0.15 10.93 127.77 1.40 1.55 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.12 1.22 7.79 -2.38 -0.02 1.20 16 34 H 0.12 1.26 7.87 -2.39 -0.02 1.24 16 35 H 0.11 1.03 7.48 -2.39 -0.02 1.01 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.82 7.28 -2.39 -0.02 1.80 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.02 0.86 2.78 -2.39 -0.01 0.85 16 41 H 0.05 2.07 6.29 -2.39 -0.02 2.05 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.73 6.14 -2.39 -0.01 1.71 16 45 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 47 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.10 -0.01 6.91 -2.38 -0.02 -0.02 16 49 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -93.24 392.58 3.66 -89.59 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.90 Total: 3.52 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 10.00 Total: 27.02 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -7.99 Total: -132.61 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.97 Total: -37.07 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.72 Total: 49.55 kcal Total: -93.24 3.66 -89.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.390 kcal (2) G-P(sol) polarization free energy of solvation -93.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds