Wall clock time and date at job start Tue Mar 31 2020 19:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46864 * 2 1 4 4 O 1.42896 * 109.47330 * 239.99479 * 2 1 3 5 5 C 1.42902 * 113.99842 * 89.99888 * 4 2 1 6 6 C 1.50705 * 109.47219 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99606 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99839 * 180.02562 * 6 5 4 9 9 C 1.47022 * 125.65172 * 359.96662 * 8 6 5 10 10 C 1.54319 * 107.27343 * 178.99981 * 9 8 6 11 11 C 1.55160 * 102.94188 * 337.81048 * 10 9 8 12 12 H 1.09003 * 111.00529 * 277.39291 * 11 10 9 13 13 N 1.46497 * 111.00196 * 153.57405 * 11 10 9 14 14 C 1.46490 * 120.00395 * 304.57783 * 13 11 10 15 15 C 1.36948 * 119.99685 * 124.58576 * 13 11 10 16 16 H 1.07999 * 119.99727 * 340.69559 * 15 13 11 17 17 C 1.38806 * 119.99937 * 160.43039 * 15 13 11 18 18 N 1.31626 * 120.00054 * 347.09350 * 17 15 13 19 19 Si 1.86803 * 120.00029 * 167.10019 * 17 15 13 20 20 H 1.48497 * 109.47111 * 89.99720 * 19 17 15 21 21 H 1.48504 * 109.46951 * 209.99494 * 19 17 15 22 22 H 1.48503 * 109.46975 * 329.99542 * 19 17 15 23 23 C 1.47470 * 125.62527 * 179.97438 * 8 6 5 24 24 C 1.50703 * 109.46983 * 119.99531 * 2 1 3 25 25 N 1.30502 * 125.64783 * 75.02803 * 24 2 1 26 26 C 1.34126 * 109.25411 * 179.97438 * 25 24 2 27 27 C 1.34673 * 108.02239 * 0.02562 * 26 25 24 28 28 N 1.35041 * 125.64892 * 254.71701 * 24 2 1 29 29 C 1.46493 * 126.39842 * 0.02562 * 28 24 2 30 30 H 1.08996 * 109.46932 * 60.00245 * 1 2 3 31 31 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47266 * 299.99976 * 1 2 3 33 33 H 1.08993 * 109.47100 * 59.99984 * 5 4 2 34 34 H 1.09004 * 109.47467 * 299.99947 * 5 4 2 35 35 H 1.09005 * 109.87853 * 59.58110 * 9 8 6 36 36 H 1.09003 * 110.01323 * 298.49381 * 9 8 6 37 37 H 1.08999 * 110.72203 * 219.45061 * 10 9 8 38 38 H 1.09002 * 110.71771 * 96.17159 * 10 9 8 39 39 H 1.08995 * 109.47505 * 264.82838 * 14 13 11 40 40 H 1.09006 * 109.47086 * 24.83014 * 14 13 11 41 41 H 1.09004 * 109.47038 * 144.82791 * 14 13 11 42 42 H 0.96992 * 119.99914 * 179.97438 * 18 17 15 43 43 H 1.09003 * 110.34708 * 85.22870 * 23 8 6 44 44 H 1.08998 * 110.40693 * 322.88973 * 23 8 6 45 45 H 1.07998 * 125.98841 * 179.97438 * 26 25 24 46 46 H 1.07992 * 126.59315 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.47906 * 89.99479 * 29 28 24 48 48 H 1.09000 * 109.47211 * 209.99814 * 29 28 24 49 49 H 1.09004 * 109.47066 * 329.99073 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2940 6 6 2.7004 -0.6286 -3.4613 7 8 2.8743 -1.8226 -3.3396 8 7 2.9554 -0.0271 -4.6402 9 6 2.7895 1.4058 -4.9247 10 6 3.2244 1.6359 -6.3873 11 6 4.1457 0.4201 -6.6713 12 1 5.1549 0.5997 -6.3007 13 7 4.1636 0.0974 -8.1002 14 6 2.9081 -0.1661 -8.8075 15 6 5.3542 0.0418 -8.7746 16 1 6.2295 0.5244 -8.3656 17 6 5.4372 -0.6394 -9.9812 18 7 4.4602 -1.4386 -10.3543 19 14 6.9355 -0.4219 -11.0754 20 1 7.9608 -1.4348 -10.7178 21 1 6.5405 -0.5977 -12.4962 22 1 7.4961 0.9396 -10.8823 23 6 3.4470 -0.6977 -5.8581 24 6 2.0324 -0.7103 1.2306 25 7 2.0276 -2.0017 1.4185 26 6 2.5492 -2.2752 2.6235 27 6 2.8897 -1.1090 3.2046 28 7 2.5674 -0.1163 2.3189 29 6 2.7628 1.3220 2.5165 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9320 0.9512 -2.0450 34 1 1.2539 0.6545 -2.5589 35 1 3.4182 1.9919 -4.2543 36 1 1.7455 1.6926 -4.7988 37 1 3.7782 2.5699 -6.4826 38 1 2.3606 1.6287 -7.0521 39 1 2.7255 -1.2402 -8.8357 40 1 2.0876 0.3285 -8.2876 41 1 2.9772 0.2176 -9.8254 42 1 4.5180 -1.9143 -11.1976 43 1 2.6136 -1.1139 -6.4242 44 1 4.1597 -1.4808 -5.5995 45 1 2.6735 -3.2584 3.0530 46 1 3.3360 -0.9818 4.1797 47 1 1.8767 1.7479 2.9871 48 1 3.6291 1.4864 3.1572 49 1 2.9281 1.8021 1.5519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193744451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:29 Heat of formation + Delta-G solvation = 28.549290 kcal Electronic energy + Delta-G solvation = -29049.633481 eV Core-core repulsion = 25014.824921 eV Total energy + Delta-G solvation = -4034.808560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.36401 -39.85827 -38.33604 -37.10928 -34.81715 -34.35384 -32.55612 -31.70287 -29.84007 -28.96587 -28.78589 -27.38068 -26.97942 -26.05948 -23.93951 -23.25621 -22.35438 -21.59119 -20.11380 -19.36798 -19.16275 -17.71250 -17.15667 -17.00518 -16.57876 -16.27565 -16.00859 -15.63899 -15.13323 -14.81264 -14.53872 -14.20609 -13.85326 -13.72158 -13.41464 -13.31309 -13.25757 -13.14729 -13.04443 -12.72292 -12.62183 -12.43206 -12.34030 -12.05876 -11.94594 -11.50804 -11.31990 -10.91075 -10.81251 -10.52082 -10.44101 -10.29482 -10.12539 -10.00894 -9.90298 -9.86148 -9.82361 -9.52902 -8.67791 -8.60400 -8.31865 -6.85973 -5.76610 -3.21638 1.67428 2.27291 2.78942 2.81715 3.04346 3.37078 3.43351 3.44856 3.73820 4.05253 4.22409 4.32837 4.45804 4.59329 4.61920 4.66979 4.78721 4.86946 4.89416 4.96321 5.00904 5.16155 5.24845 5.27784 5.30572 5.39718 5.45261 5.45958 5.60729 5.76977 5.86441 5.87636 5.96931 5.98609 6.28491 6.36875 6.46844 6.52075 6.60685 6.74551 6.78775 6.85126 6.91364 7.36747 7.69174 7.78076 7.78779 7.93362 8.32389 8.41793 9.18006 9.80445 10.27371 11.28100 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.001999 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.517604 B =14001.068917 C =14199.282523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.072 0.928 4 O -0.335 6.335 5 C 0.047 3.953 6 C 0.524 3.476 7 O -0.517 6.517 8 N -0.615 5.615 9 C 0.102 3.898 10 C -0.153 4.153 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.586 5.586 14 C 0.160 3.840 15 C -0.259 4.259 16 H 0.072 0.928 17 C 0.002 3.998 18 N -0.906 5.906 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.089 3.911 24 C 0.202 3.798 25 N -0.457 5.457 26 C -0.028 4.028 27 C -0.057 4.057 28 N -0.458 5.458 29 C 0.068 3.932 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.001 0.999 41 H 0.048 0.952 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.171 0.829 46 H 0.176 0.824 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 11.755 25.903 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.252 6.252 5 C -0.033 4.033 6 C 0.311 3.689 7 O -0.392 6.392 8 N -0.352 5.352 9 C -0.022 4.022 10 C -0.193 4.193 11 C 0.062 3.938 12 H 0.096 0.904 13 N -0.306 5.306 14 C 0.016 3.984 15 C -0.389 4.389 16 H 0.089 0.911 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.738 3.262 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.035 4.035 24 C -0.060 4.060 25 N -0.175 5.175 26 C -0.177 4.177 27 C -0.190 4.190 28 N -0.143 5.143 29 C -0.075 4.075 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.020 0.980 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.534 10.322 25.279 28.326 hybrid contribution 1.079 0.944 0.124 1.439 sum -6.456 11.265 25.403 28.529 Atomic orbital electron populations 1.22234 0.93527 1.04459 1.02275 1.20035 0.94131 0.92952 0.81249 0.90989 1.88232 1.86341 1.32583 1.17996 1.22304 1.01115 0.92961 0.86925 1.19690 0.78881 0.87960 0.82415 1.90762 1.51204 1.14811 1.82443 1.48476 1.65841 1.09751 1.11111 1.22054 1.00240 0.81525 0.98350 1.23202 1.01746 1.01151 0.93239 1.21438 0.96472 0.90420 0.85463 0.90404 1.43907 1.04127 1.80904 1.01677 1.20846 0.84104 0.98459 0.94982 1.19238 0.88805 1.28082 1.02753 0.91061 1.25009 0.97900 0.96980 0.99745 1.70094 1.32728 1.29365 1.22859 0.86213 0.82212 0.77858 0.79954 1.21380 1.21566 1.20532 1.23154 0.98988 0.97930 0.83471 1.22807 1.03209 0.89248 0.90736 1.70312 1.18731 1.11786 1.16630 1.22434 1.04398 0.98289 0.92538 1.22718 1.09940 0.88200 0.98105 1.45263 1.46491 1.07692 1.14829 1.22091 1.03506 0.77807 1.04065 0.91257 0.90291 0.91614 0.90555 0.90223 0.91975 0.92041 0.90511 0.90280 0.95130 0.98044 0.93320 0.93603 0.91326 0.90842 0.81130 0.80668 0.90288 0.89284 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.51 37.16 0.35 -1.07 16 2 C 0.18 1.81 3.10 -27.88 -0.09 1.72 16 3 H 0.07 0.48 6.38 -51.93 -0.33 0.15 16 4 O -0.33 -4.86 9.50 -55.14 -0.52 -5.39 16 5 C 0.05 0.56 5.42 36.01 0.20 0.76 16 6 C 0.52 8.94 7.93 -10.98 -0.09 8.85 16 7 O -0.52 -11.53 16.76 -14.35 -0.24 -11.77 16 8 N -0.62 -9.94 3.33 -170.49 -0.57 -10.51 16 9 C 0.10 1.25 6.49 -3.07 -0.02 1.23 16 10 C -0.15 -2.29 6.49 -24.90 -0.16 -2.45 16 11 C 0.17 3.37 3.54 -65.79 -0.23 3.14 16 12 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 13 N -0.59 -14.13 2.97 -171.05 -0.51 -14.63 16 14 C 0.16 3.82 7.71 59.84 0.46 4.28 16 15 C -0.26 -6.93 9.66 -15.06 -0.15 -7.08 16 16 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 17 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 18 N -0.91 -26.11 10.50 55.49 0.58 -25.53 16 19 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.09 1.73 6.49 -2.51 -0.02 1.72 16 24 C 0.20 2.43 6.79 -155.41 -1.05 1.37 16 25 N -0.46 -6.77 11.25 -10.81 -0.12 -6.90 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 27 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 28 N -0.46 -4.01 3.15 -121.28 -0.38 -4.39 16 29 C 0.07 0.26 10.93 59.84 0.65 0.92 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 39 H 0.03 0.80 7.43 -51.93 -0.39 0.42 16 40 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 41 H 0.05 1.25 7.10 -51.93 -0.37 0.88 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.07 1.44 7.20 -51.93 -0.37 1.07 16 44 H 0.07 1.60 8.04 -51.93 -0.42 1.18 16 45 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.09 0.25 6.92 -51.93 -0.36 -0.11 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -37.50 397.33 -9.31 -46.81 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.88 Total: -2.37 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -0.63 Total: 12.14 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -1.00 Total: -61.96 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.76 Total: -17.15 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.50 -9.31 -46.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.356 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds