Wall clock time and date at job start Tue Mar 31 2020 19:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46864 * 2 1 4 4 O 1.42896 * 109.47330 * 239.99479 * 2 1 3 5 5 C 1.42902 * 113.99842 * 89.99888 * 4 2 1 6 6 C 1.50705 * 109.47219 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99606 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99839 * 180.02562 * 6 5 4 9 9 C 1.47022 * 125.65172 * 359.96662 * 8 6 5 10 10 C 1.54319 * 107.27343 * 178.99981 * 9 8 6 11 11 C 1.55160 * 102.94188 * 337.81048 * 10 9 8 12 12 H 1.09003 * 111.00529 * 277.39291 * 11 10 9 13 13 N 1.46497 * 111.00196 * 153.57405 * 11 10 9 14 14 C 1.46490 * 120.00395 * 304.57783 * 13 11 10 15 15 C 1.36948 * 119.99685 * 124.58576 * 13 11 10 16 16 H 1.07999 * 119.99727 * 340.69559 * 15 13 11 17 17 C 1.38806 * 119.99937 * 160.43039 * 15 13 11 18 18 N 1.31626 * 120.00054 * 347.09350 * 17 15 13 19 19 Si 1.86803 * 120.00029 * 167.10019 * 17 15 13 20 20 H 1.48497 * 109.47111 * 89.99720 * 19 17 15 21 21 H 1.48504 * 109.46951 * 209.99494 * 19 17 15 22 22 H 1.48503 * 109.46975 * 329.99542 * 19 17 15 23 23 C 1.47470 * 125.62527 * 179.97438 * 8 6 5 24 24 C 1.50703 * 109.46983 * 119.99531 * 2 1 3 25 25 N 1.30502 * 125.64783 * 75.02803 * 24 2 1 26 26 C 1.34126 * 109.25411 * 179.97438 * 25 24 2 27 27 C 1.34673 * 108.02239 * 0.02562 * 26 25 24 28 28 N 1.35041 * 125.64892 * 254.71701 * 24 2 1 29 29 C 1.46493 * 126.39842 * 0.02562 * 28 24 2 30 30 H 1.08996 * 109.46932 * 60.00245 * 1 2 3 31 31 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47266 * 299.99976 * 1 2 3 33 33 H 1.08993 * 109.47100 * 59.99984 * 5 4 2 34 34 H 1.09004 * 109.47467 * 299.99947 * 5 4 2 35 35 H 1.09005 * 109.87853 * 59.58110 * 9 8 6 36 36 H 1.09003 * 110.01323 * 298.49381 * 9 8 6 37 37 H 1.08999 * 110.72203 * 219.45061 * 10 9 8 38 38 H 1.09002 * 110.71771 * 96.17159 * 10 9 8 39 39 H 1.08995 * 109.47505 * 264.82838 * 14 13 11 40 40 H 1.09006 * 109.47086 * 24.83014 * 14 13 11 41 41 H 1.09004 * 109.47038 * 144.82791 * 14 13 11 42 42 H 0.96992 * 119.99914 * 179.97438 * 18 17 15 43 43 H 1.09003 * 110.34708 * 85.22870 * 23 8 6 44 44 H 1.08998 * 110.40693 * 322.88973 * 23 8 6 45 45 H 1.07998 * 125.98841 * 179.97438 * 26 25 24 46 46 H 1.07992 * 126.59315 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.47906 * 89.99479 * 29 28 24 48 48 H 1.09000 * 109.47211 * 209.99814 * 29 28 24 49 49 H 1.09004 * 109.47066 * 329.99073 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2940 6 6 2.7004 -0.6286 -3.4613 7 8 2.8743 -1.8226 -3.3396 8 7 2.9554 -0.0271 -4.6402 9 6 2.7895 1.4058 -4.9247 10 6 3.2244 1.6359 -6.3873 11 6 4.1457 0.4201 -6.6713 12 1 5.1549 0.5997 -6.3007 13 7 4.1636 0.0974 -8.1002 14 6 2.9081 -0.1661 -8.8075 15 6 5.3542 0.0418 -8.7746 16 1 6.2295 0.5244 -8.3656 17 6 5.4372 -0.6394 -9.9812 18 7 4.4602 -1.4386 -10.3543 19 14 6.9355 -0.4219 -11.0754 20 1 7.9608 -1.4348 -10.7178 21 1 6.5405 -0.5977 -12.4962 22 1 7.4961 0.9396 -10.8823 23 6 3.4470 -0.6977 -5.8581 24 6 2.0324 -0.7103 1.2306 25 7 2.0276 -2.0017 1.4185 26 6 2.5492 -2.2752 2.6235 27 6 2.8897 -1.1090 3.2046 28 7 2.5674 -0.1163 2.3189 29 6 2.7628 1.3220 2.5165 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9320 0.9512 -2.0450 34 1 1.2539 0.6545 -2.5589 35 1 3.4182 1.9919 -4.2543 36 1 1.7455 1.6926 -4.7988 37 1 3.7782 2.5699 -6.4826 38 1 2.3606 1.6287 -7.0521 39 1 2.7255 -1.2402 -8.8357 40 1 2.0876 0.3285 -8.2876 41 1 2.9772 0.2176 -9.8254 42 1 4.5180 -1.9143 -11.1976 43 1 2.6136 -1.1139 -6.4242 44 1 4.1597 -1.4808 -5.5995 45 1 2.6735 -3.2584 3.0530 46 1 3.3360 -0.9818 4.1797 47 1 1.8767 1.7479 2.9871 48 1 3.6291 1.4864 3.1572 49 1 2.9281 1.8021 1.5519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193744451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:28 Heat of formation + Delta-G solvation = 2.755440 kcal Electronic energy + Delta-G solvation = -29050.751987 eV Core-core repulsion = 25014.824921 eV Total energy + Delta-G solvation = -4035.927066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.05365 -41.14663 -39.41286 -38.47201 -36.56431 -34.95342 -33.60344 -33.20589 -31.37751 -30.05925 -29.62646 -28.27728 -28.03148 -27.78937 -25.12567 -24.43444 -23.75502 -22.28380 -20.96534 -20.85595 -20.34927 -18.97077 -18.52900 -17.97487 -17.68825 -17.42408 -16.96613 -16.69960 -16.43798 -16.01016 -15.55095 -15.36826 -15.01297 -14.89377 -14.67713 -14.39568 -14.32686 -14.16627 -13.87395 -13.79971 -13.65588 -13.45453 -13.37565 -13.18604 -13.10840 -12.94149 -12.76506 -12.48230 -12.39911 -12.15762 -12.05528 -12.01387 -11.79964 -11.38663 -10.93628 -10.88368 -10.79283 -10.64088 -10.53880 -9.68212 -9.39104 -8.83921 -7.83871 -5.30913 0.98868 1.47383 1.48038 1.54682 1.55719 1.58400 1.92156 2.17459 2.50881 2.91953 3.28027 3.36700 3.49577 3.58152 3.81677 3.93198 3.95913 4.06356 4.08245 4.12407 4.14229 4.20516 4.30330 4.39196 4.45760 4.47584 4.54819 4.66780 4.71405 4.72355 4.75752 4.80669 4.84136 4.88819 5.03866 5.19793 5.23173 5.24699 5.31862 5.33987 5.46125 5.63172 5.74174 5.81349 6.00558 6.25996 6.29776 6.55475 7.12041 7.14719 7.20799 7.84413 8.26551 9.19341 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.001999 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.517604 B =14001.068917 C =14199.282523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.173 3.827 3 H 0.117 0.883 4 O -0.382 6.382 5 C 0.057 3.943 6 C 0.514 3.486 7 O -0.588 6.588 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.139 4.139 11 C 0.165 3.835 12 H 0.075 0.925 13 N -0.603 5.603 14 C 0.179 3.821 15 C -0.263 4.263 16 H 0.078 0.922 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.972 3.028 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.264 1.264 23 C 0.097 3.903 24 C 0.180 3.820 25 N -0.522 5.522 26 C -0.071 4.071 27 C -0.037 4.037 28 N -0.453 5.453 29 C 0.057 3.943 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.073 0.927 39 H -0.006 1.006 40 H 0.037 0.963 41 H 0.023 0.977 42 H 0.247 0.753 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.176 0.824 46 H 0.216 0.784 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 16.664 28.401 33.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.134 0.866 4 O -0.300 6.300 5 C -0.022 4.022 6 C 0.304 3.696 7 O -0.467 6.467 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.179 4.179 11 C 0.056 3.944 12 H 0.093 0.907 13 N -0.324 5.324 14 C 0.034 3.966 15 C -0.393 4.393 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.588 5.588 19 Si 0.800 3.200 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.029 4.029 24 C -0.083 4.083 25 N -0.241 5.241 26 C -0.219 4.219 27 C -0.171 4.171 28 N -0.136 5.136 29 C -0.084 4.084 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.012 0.988 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.193 0.807 46 H 0.232 0.768 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.543 15.336 27.825 32.654 hybrid contribution 1.089 -0.579 -0.518 1.338 sum -6.454 14.757 27.307 31.703 Atomic orbital electron populations 1.22205 0.92748 1.02729 1.04265 1.20377 0.94732 0.94357 0.79136 0.86556 1.88188 1.86986 1.35110 1.19704 1.22396 1.03842 0.91807 0.84187 1.20839 0.77545 0.87682 0.83581 1.90733 1.54185 1.18176 1.83643 1.48517 1.65022 1.11344 1.09820 1.22376 1.03573 0.78967 0.96944 1.23069 1.00322 0.99320 0.95147 1.21632 0.97651 0.92314 0.82825 0.90693 1.44109 1.03378 1.81172 1.03734 1.20517 0.85426 0.96357 0.94281 1.19635 0.89865 1.26970 1.02866 0.90395 1.25819 1.00714 0.97294 1.01424 1.70281 1.34741 1.30794 1.22977 0.85196 0.78885 0.78203 0.77676 1.21701 1.22090 1.18885 1.22709 0.97436 0.97434 0.85308 1.23154 1.03916 0.88972 0.92234 1.70196 1.20883 1.14366 1.18695 1.22769 1.06399 1.00059 0.92649 1.23272 1.07675 0.87253 0.98907 1.45544 1.44871 1.09572 1.13625 1.22515 1.05409 0.74825 1.05634 0.89237 0.93898 0.89503 0.86431 0.86234 0.87883 0.88143 0.88189 0.90825 0.98803 0.94432 0.95845 0.94327 0.93541 0.94637 0.80668 0.76774 0.88249 0.87353 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.51 71.98 0.68 -1.72 16 2 C 0.17 3.09 3.10 29.85 0.09 3.18 16 3 H 0.12 0.93 6.38 -2.39 -0.02 0.92 16 4 O -0.38 -10.54 9.50 -129.94 -1.23 -11.78 16 5 C 0.06 1.13 5.42 71.24 0.39 1.52 16 6 C 0.51 17.01 7.93 87.66 0.69 17.71 16 7 O -0.59 -27.39 16.76 16.02 0.27 -27.12 16 8 N -0.61 -18.66 3.33 -811.71 -2.70 -21.37 16 9 C 0.10 1.98 6.49 86.73 0.56 2.54 16 10 C -0.14 -3.64 6.49 31.78 0.21 -3.44 16 11 C 0.16 6.31 3.54 46.38 0.16 6.47 16 12 H 0.07 2.89 7.92 -2.39 -0.02 2.87 16 13 N -0.60 -29.41 2.97 -695.07 -2.06 -31.47 16 14 C 0.18 8.74 7.71 127.77 0.98 9.73 16 15 C -0.26 -14.22 9.66 84.03 0.81 -13.41 16 16 H 0.08 4.01 7.82 -2.91 -0.02 3.99 16 17 C -0.06 -3.24 5.11 84.86 0.43 -2.81 16 18 N -0.94 -56.43 10.50 21.65 0.23 -56.20 16 19 Si 0.97 45.09 29.57 68.60 2.03 47.11 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 23 C 0.10 3.89 6.49 86.84 0.56 4.45 16 24 C 0.18 4.12 6.79 138.13 0.94 5.06 16 25 N -0.52 -16.09 11.25 -188.13 -2.12 -18.21 16 26 C -0.07 -1.67 11.87 83.52 0.99 -0.68 16 27 C -0.04 -0.57 11.58 83.09 0.96 0.39 16 28 N -0.45 -6.71 3.15 -537.63 -1.69 -8.40 16 29 C 0.06 0.18 10.93 127.77 1.40 1.58 16 30 H 0.09 0.92 7.87 -2.39 -0.02 0.90 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.12 1.45 7.87 -2.38 -0.02 1.43 16 35 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.04 6.17 -2.39 -0.01 2.02 16 39 H -0.01 -0.36 7.43 -2.39 -0.02 -0.37 16 40 H 0.04 1.52 6.17 -2.38 -0.01 1.51 16 41 H 0.02 1.22 7.10 -2.39 -0.02 1.21 16 42 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.05 2.05 7.20 -2.39 -0.02 2.03 16 44 H 0.03 1.65 8.04 -2.39 -0.02 1.63 16 45 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 46 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.10 0.05 6.92 -2.38 -0.02 0.03 16 Total: -1.00 -92.56 397.33 3.53 -89.03 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.94 Total: 7.83 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 9.87 Total: 30.58 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -8.35 Total: -135.65 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.97 Total: -38.90 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -92.56 3.53 -89.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193744451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.789 kcal (2) G-P(sol) polarization free energy of solvation -92.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds