Wall clock time and date at job start Tue Mar 31 2020 19:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46987 * 2 1 4 4 C 1.50701 * 109.47052 * 119.99726 * 2 1 3 5 5 O 1.21280 * 120.00056 * 119.99727 * 4 2 1 6 6 N 1.34785 * 119.99974 * 300.00204 * 4 2 1 7 7 C 1.47510 * 118.75374 * 359.97438 * 6 4 2 8 8 C 1.53572 * 111.02653 * 221.63478 * 7 6 4 9 9 C 1.51529 * 109.58392 * 39.97717 * 8 7 6 10 10 O 1.42079 * 108.75797 * 268.59402 * 9 8 7 11 11 C 1.38007 * 119.44325 * 87.24691 * 10 9 8 12 12 H 1.09000 * 109.47140 * 56.55404 * 11 10 9 13 13 C 1.53004 * 109.46917 * 176.55003 * 11 10 9 14 14 N 1.46499 * 109.47198 * 300.00873 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.45115 * 118.75609 * 180.02562 * 6 4 2 24 24 C 1.50695 * 109.47175 * 239.99422 * 2 1 3 25 25 C 1.35313 * 126.13006 * 275.02752 * 24 2 1 26 26 C 1.39872 * 107.92249 * 179.97438 * 25 24 2 27 27 N 1.30837 * 108.20305 * 359.97438 * 26 25 24 28 28 N 1.34955 * 126.12221 * 94.71345 * 24 2 1 29 29 C 1.46492 * 126.03885 * 0.03595 * 28 24 2 30 30 H 1.09000 * 109.46796 * 60.00372 * 1 2 3 31 31 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47320 * 300.00414 * 1 2 3 33 33 H 1.08999 * 109.16921 * 342.03216 * 7 6 4 34 34 H 1.09000 * 109.16932 * 101.28572 * 7 6 4 35 35 H 1.08999 * 109.45505 * 160.01680 * 8 7 6 36 36 H 1.09010 * 109.44746 * 279.96241 * 8 7 6 37 37 H 1.09001 * 109.58765 * 28.37726 * 9 8 7 38 38 H 1.08998 * 109.59251 * 148.67545 * 9 8 7 39 39 H 1.09009 * 109.46730 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.46846 * 60.01205 * 13 11 10 41 41 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46143 * 330.69017 * 23 6 4 44 44 H 1.09007 * 109.45643 * 210.74011 * 23 6 4 45 45 H 1.07996 * 126.04127 * 359.97438 * 25 24 2 46 46 H 1.08003 * 125.90115 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47085 * 90.00119 * 29 28 24 48 48 H 1.09001 * 109.47263 * 209.99325 * 29 28 24 49 49 H 1.08992 * 109.47402 * 329.99933 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 0.8576 0.9520 2.5580 8 6 1.3613 1.8890 3.6655 9 6 2.8759 1.9312 3.6452 10 8 3.3726 0.9297 4.5221 11 6 3.5655 -0.3520 4.0482 12 1 4.2364 -0.3248 3.1895 13 6 4.1825 -1.2157 5.1502 14 7 5.4700 -0.6454 5.5543 15 6 6.2131 -1.2553 6.5295 16 1 5.8480 -2.1543 7.0038 17 6 7.4357 -0.7181 6.9084 18 7 7.8805 0.3777 6.3307 19 14 8.4491 -1.5497 8.2392 20 1 8.7811 -2.9340 7.8163 21 1 9.7027 -0.7843 8.4577 22 1 7.6687 -1.5916 9.5020 23 6 2.2056 -0.9544 3.6211 24 6 2.0324 -0.7105 -1.2303 25 6 2.2080 -2.0454 -1.3649 26 6 2.6865 -2.2885 -2.6566 27 7 2.7937 -1.1408 -3.2755 28 7 2.3820 -0.1299 -2.3973 29 6 2.3412 1.3044 -2.6926 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.8715 1.4829 1.6061 34 1 -0.1649 0.6494 2.7838 35 1 0.9680 2.8919 3.4992 36 1 1.0216 1.5218 4.6340 37 1 3.2332 1.7408 2.6332 38 1 3.2187 2.9117 3.9755 39 1 4.3353 -2.2280 4.7757 40 1 3.5116 -1.2431 6.0088 41 1 5.7981 0.1618 5.1281 42 1 8.7347 0.7532 6.5957 43 1 2.3358 -2.0094 3.3800 44 1 1.4915 -0.8545 4.4386 45 1 2.0132 -2.7914 -0.6087 46 1 2.9261 -3.2565 -3.0715 47 1 3.2968 1.7572 -2.4283 48 1 2.1515 1.4512 -3.7559 49 1 1.5450 1.7721 -2.1135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200536295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:59 Heat of formation + Delta-G solvation = 34.529921 kcal Electronic energy + Delta-G solvation = -30439.947882 eV Core-core repulsion = 26405.398662 eV Total energy + Delta-G solvation = -4034.549221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65860 -40.54233 -38.56500 -35.90657 -34.59694 -34.50970 -33.23070 -32.77948 -30.90913 -29.55637 -28.61077 -26.91071 -26.67802 -25.75437 -24.37827 -22.70467 -21.74158 -21.33285 -20.97015 -20.35052 -19.01276 -17.48172 -17.18878 -16.92990 -16.47618 -16.29133 -15.77970 -15.70992 -14.90558 -14.79885 -14.63165 -14.33830 -14.04859 -13.93459 -13.85758 -13.45339 -13.16159 -13.02636 -12.97550 -12.71679 -12.61674 -12.53274 -12.48788 -12.16926 -11.89800 -11.71785 -11.61685 -11.37745 -10.97539 -10.79919 -10.74022 -10.71395 -10.27108 -10.04061 -9.78722 -9.63573 -9.42571 -9.38468 -8.80076 -8.59939 -8.53096 -6.82127 -5.66939 -2.95036 1.69201 2.27120 2.43676 2.74686 2.90150 3.50316 3.53843 3.55355 3.93392 3.98981 4.13996 4.36287 4.47110 4.56566 4.61356 4.65403 4.69643 4.84681 4.85680 5.00820 5.10752 5.14873 5.17261 5.21373 5.28474 5.31846 5.39367 5.43385 5.56929 5.58912 5.65690 5.68010 5.73008 5.81369 5.93721 5.97858 6.08472 6.16553 6.35792 6.44870 6.61936 6.67827 6.79987 6.83909 7.12995 7.59758 7.76344 7.99275 8.01911 8.51493 9.62877 10.21410 10.57427 11.55963 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.002855 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.272638 B = 9805.474808 C =10713.401289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 H 0.103 0.897 4 C 0.515 3.485 5 O -0.511 6.511 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.169 4.169 9 C 0.074 3.926 10 O -0.366 6.366 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.166 3.834 14 N -0.725 5.725 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.082 3.918 24 C 0.085 3.915 25 C -0.226 4.226 26 C 0.040 3.960 27 N -0.297 5.297 28 N -0.375 5.375 29 C 0.099 3.901 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.026 0.974 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.154 0.846 46 H 0.183 0.817 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.490 4.707 -16.413 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.068 4.068 3 H 0.121 0.879 4 C 0.301 3.699 5 O -0.385 6.385 6 N -0.339 5.339 7 C -0.021 4.021 8 C -0.207 4.207 9 C -0.003 4.003 10 O -0.284 6.284 11 C 0.029 3.971 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.370 5.370 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.041 4.041 24 C -0.042 4.042 25 C -0.255 4.255 26 C -0.145 4.145 27 N -0.119 5.119 28 N -0.159 5.159 29 C -0.043 4.043 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.172 0.828 46 H 0.200 0.800 47 H 0.092 0.908 48 H 0.108 0.892 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.699 4.838 -17.279 27.393 hybrid contribution 0.440 -0.425 1.013 1.184 sum -20.259 4.412 -16.265 26.353 Atomic orbital electron populations 1.22096 0.91203 1.04134 1.03537 1.19747 0.97920 0.99648 0.89528 0.87866 1.20146 0.80562 0.84965 0.84226 1.90771 1.36344 1.25668 1.85746 1.47843 1.51423 1.28807 1.05873 1.22252 0.93888 0.85779 1.00210 1.22557 0.98375 0.99839 0.99966 1.22083 0.91725 0.92339 0.94169 1.86431 1.84481 1.17973 1.39540 1.22264 0.93655 0.83214 0.97983 0.93152 1.20614 0.88691 0.93665 0.93217 1.42198 1.17770 1.31475 1.45511 1.19192 0.99216 1.06492 1.11980 0.91241 1.24733 0.98085 0.97901 1.00332 1.69673 1.21211 1.22121 1.45152 0.86257 0.79613 0.78511 0.81744 1.21295 1.21754 1.21316 1.22434 0.96862 0.98035 0.86810 1.20213 1.02325 0.93608 0.88027 1.21414 1.11088 0.94937 0.98023 1.23884 0.99651 0.97017 0.93929 1.77336 1.22281 0.95806 1.16435 1.48384 1.51524 1.06782 1.09214 1.21825 1.03075 0.75688 1.03722 0.91432 0.91135 0.90043 0.89739 0.91039 0.89644 0.89767 0.93776 0.89261 0.94788 0.95595 0.77891 0.93592 0.88692 0.89741 0.82836 0.80028 0.90771 0.89201 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.69 37.16 0.32 -0.60 16 2 C -0.05 -0.41 1.91 -92.92 -0.18 -0.59 16 3 H 0.10 0.74 6.77 -51.93 -0.35 0.39 16 4 C 0.52 6.39 6.96 -10.98 -0.08 6.31 16 5 O -0.51 -8.43 13.17 5.56 0.07 -8.35 16 6 N -0.61 -6.71 2.19 -172.51 -0.38 -7.09 16 7 C 0.10 0.73 4.46 -3.19 -0.01 0.72 16 8 C -0.17 -1.43 5.78 -27.18 -0.16 -1.58 16 9 C 0.07 0.92 6.37 36.41 0.23 1.15 16 10 O -0.37 -6.39 9.18 -26.51 -0.24 -6.63 16 11 C 0.09 1.57 2.73 -25.81 -0.07 1.50 16 12 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 13 C 0.17 3.55 5.95 -4.04 -0.02 3.52 16 14 N -0.73 -19.54 5.49 -59.90 -0.33 -19.87 16 15 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 19 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.08 1.11 4.86 -3.87 -0.02 1.10 16 24 C 0.09 1.00 5.73 -82.26 -0.47 0.52 16 25 C -0.23 -2.94 9.14 -40.01 -0.37 -3.31 16 26 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 27 N -0.30 -3.97 12.58 30.63 0.39 -3.58 16 28 N -0.38 -4.28 4.01 -63.89 -0.26 -4.53 16 29 C 0.10 0.67 11.06 59.84 0.66 1.33 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.36 4.61 -51.93 -0.24 0.12 16 33 H 0.08 0.43 4.96 -51.93 -0.26 0.17 16 34 H 0.07 0.40 7.55 -51.93 -0.39 0.01 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.81 8.01 -51.92 -0.42 0.39 16 37 H 0.04 0.55 7.40 -51.93 -0.38 0.17 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.39 11.12 7.53 -40.82 -0.31 10.81 16 42 H 0.25 7.69 8.31 -40.82 -0.34 7.36 16 43 H 0.09 1.38 7.27 -51.93 -0.38 1.00 16 44 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 45 H 0.15 2.08 6.80 -52.49 -0.36 1.72 16 46 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.34 7.55 -51.93 -0.39 -0.05 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -37.64 385.77 -7.52 -45.16 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.67 Total: 6.81 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.61 Total: 2.74 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.15 Total: -63.61 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.17 Total: -14.98 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.64 -7.52 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200536295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.686 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds