Wall clock time and date at job start Tue Mar 31 2020 19:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46987 * 2 1 4 4 C 1.50701 * 109.47052 * 119.99726 * 2 1 3 5 5 O 1.21280 * 120.00056 * 119.99727 * 4 2 1 6 6 N 1.34785 * 119.99974 * 300.00204 * 4 2 1 7 7 C 1.47510 * 118.75374 * 359.97438 * 6 4 2 8 8 C 1.53572 * 111.02653 * 221.63478 * 7 6 4 9 9 C 1.51529 * 109.58392 * 39.97717 * 8 7 6 10 10 O 1.42079 * 108.75797 * 268.59402 * 9 8 7 11 11 C 1.38007 * 119.44325 * 87.24691 * 10 9 8 12 12 H 1.09000 * 109.47140 * 56.55404 * 11 10 9 13 13 C 1.53004 * 109.46917 * 176.55003 * 11 10 9 14 14 N 1.46499 * 109.47198 * 300.00873 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.45115 * 118.75609 * 180.02562 * 6 4 2 24 24 C 1.50695 * 109.47175 * 239.99422 * 2 1 3 25 25 C 1.35313 * 126.13006 * 275.02752 * 24 2 1 26 26 C 1.39872 * 107.92249 * 179.97438 * 25 24 2 27 27 N 1.30837 * 108.20305 * 359.97438 * 26 25 24 28 28 N 1.34955 * 126.12221 * 94.71345 * 24 2 1 29 29 C 1.46492 * 126.03885 * 0.03595 * 28 24 2 30 30 H 1.09000 * 109.46796 * 60.00372 * 1 2 3 31 31 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47320 * 300.00414 * 1 2 3 33 33 H 1.08999 * 109.16921 * 342.03216 * 7 6 4 34 34 H 1.09000 * 109.16932 * 101.28572 * 7 6 4 35 35 H 1.08999 * 109.45505 * 160.01680 * 8 7 6 36 36 H 1.09010 * 109.44746 * 279.96241 * 8 7 6 37 37 H 1.09001 * 109.58765 * 28.37726 * 9 8 7 38 38 H 1.08998 * 109.59251 * 148.67545 * 9 8 7 39 39 H 1.09009 * 109.46730 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.46846 * 60.01205 * 13 11 10 41 41 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46143 * 330.69017 * 23 6 4 44 44 H 1.09007 * 109.45643 * 210.74011 * 23 6 4 45 45 H 1.07996 * 126.04127 * 359.97438 * 25 24 2 46 46 H 1.08003 * 125.90115 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47085 * 90.00119 * 29 28 24 48 48 H 1.09001 * 109.47263 * 209.99325 * 29 28 24 49 49 H 1.08992 * 109.47402 * 329.99933 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 0.8576 0.9520 2.5580 8 6 1.3613 1.8890 3.6655 9 6 2.8759 1.9312 3.6452 10 8 3.3726 0.9297 4.5221 11 6 3.5655 -0.3520 4.0482 12 1 4.2364 -0.3248 3.1895 13 6 4.1825 -1.2157 5.1502 14 7 5.4700 -0.6454 5.5543 15 6 6.2131 -1.2553 6.5295 16 1 5.8480 -2.1543 7.0038 17 6 7.4357 -0.7181 6.9084 18 7 7.8805 0.3777 6.3307 19 14 8.4491 -1.5497 8.2392 20 1 8.7811 -2.9340 7.8163 21 1 9.7027 -0.7843 8.4577 22 1 7.6687 -1.5916 9.5020 23 6 2.2056 -0.9544 3.6211 24 6 2.0324 -0.7105 -1.2303 25 6 2.2080 -2.0454 -1.3649 26 6 2.6865 -2.2885 -2.6566 27 7 2.7937 -1.1408 -3.2755 28 7 2.3820 -0.1299 -2.3973 29 6 2.3412 1.3044 -2.6926 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.8715 1.4829 1.6061 34 1 -0.1649 0.6494 2.7838 35 1 0.9680 2.8919 3.4992 36 1 1.0216 1.5218 4.6340 37 1 3.2332 1.7408 2.6332 38 1 3.2187 2.9117 3.9755 39 1 4.3353 -2.2280 4.7757 40 1 3.5116 -1.2431 6.0088 41 1 5.7981 0.1618 5.1281 42 1 8.7347 0.7532 6.5957 43 1 2.3358 -2.0094 3.3800 44 1 1.4915 -0.8545 4.4386 45 1 2.0132 -2.7914 -0.6087 46 1 2.9261 -3.2565 -3.0715 47 1 3.2968 1.7572 -2.4283 48 1 2.1515 1.4512 -3.7559 49 1 1.5450 1.7721 -2.1135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200536295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:58 Heat of formation + Delta-G solvation = 7.381140 kcal Electronic energy + Delta-G solvation = -30441.125142 eV Core-core repulsion = 26405.398662 eV Total energy + Delta-G solvation = -4035.726480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53111 -41.52283 -39.72343 -37.02255 -36.30080 -35.33668 -34.30103 -33.85712 -32.65166 -30.60929 -29.80954 -27.73642 -27.57707 -26.95636 -25.58950 -24.30819 -22.80991 -22.30532 -22.20106 -21.23339 -19.86542 -19.25968 -18.30806 -17.99733 -17.58007 -17.41775 -16.83112 -16.50315 -16.49063 -15.97035 -15.62265 -15.41309 -15.16590 -14.94832 -14.79300 -14.71448 -14.63259 -14.22568 -13.87644 -13.70642 -13.59478 -13.37310 -13.23338 -13.17097 -13.09299 -12.83107 -12.73409 -12.58761 -12.38323 -12.23843 -12.14645 -11.94570 -11.81418 -11.62050 -11.42225 -10.97009 -10.75734 -10.52661 -10.24286 -9.63713 -9.42725 -9.01607 -7.94507 -5.24272 0.81991 1.45855 1.49895 1.50675 1.52602 1.56590 1.85837 2.02637 2.56102 2.74031 3.21536 3.38659 3.42615 3.64640 3.72498 3.83799 3.92017 4.02228 4.02518 4.09186 4.16197 4.30336 4.33503 4.39511 4.40131 4.46529 4.54005 4.64243 4.68045 4.70224 4.71469 4.74977 4.83390 4.85705 4.87876 4.89952 5.10383 5.16058 5.20380 5.23831 5.28118 5.46331 5.52468 5.71589 6.05847 6.25763 6.27400 6.70125 6.77544 7.09624 7.32255 8.06948 8.32053 9.29217 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.002855 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.272638 B = 9805.474808 C =10713.401289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 H 0.132 0.868 4 C 0.508 3.492 5 O -0.563 6.563 6 N -0.602 5.602 7 C 0.093 3.907 8 C -0.158 4.158 9 C 0.062 3.938 10 O -0.397 6.397 11 C 0.106 3.894 12 H 0.016 0.984 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.979 3.021 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.096 3.904 24 C 0.087 3.913 25 C -0.256 4.256 26 C 0.031 3.969 27 N -0.328 5.328 28 N -0.375 5.375 29 C 0.085 3.915 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.139 0.861 46 H 0.201 0.799 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.216 6.380 -16.398 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 H 0.150 0.850 4 C 0.296 3.704 5 O -0.441 6.441 6 N -0.334 5.334 7 C -0.028 4.028 8 C -0.196 4.196 9 C -0.013 4.013 10 O -0.316 6.316 11 C 0.046 3.954 12 H 0.033 0.967 13 C 0.035 3.965 14 N -0.383 5.383 15 C -0.381 4.381 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.807 3.193 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.200 1.200 23 C -0.028 4.028 24 C -0.042 4.042 25 C -0.286 4.286 26 C -0.153 4.153 27 N -0.150 5.150 28 N -0.159 5.159 29 C -0.055 4.055 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.157 0.843 46 H 0.217 0.783 47 H 0.096 0.904 48 H 0.117 0.883 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.495 6.529 -17.278 29.886 hybrid contribution 1.266 -0.876 0.994 1.833 sum -22.228 5.653 -16.284 28.129 Atomic orbital electron populations 1.22130 0.88308 1.04045 1.05834 1.19858 0.99988 0.99860 0.86279 0.85044 1.20826 0.79682 0.84484 0.85434 1.90760 1.38687 1.28106 1.86547 1.47917 1.51243 1.29682 1.04572 1.22684 0.94380 0.84161 1.01525 1.22477 0.94761 1.02320 1.00048 1.22408 0.94855 0.90912 0.93164 1.86346 1.85456 1.18369 1.41456 1.21846 0.95059 0.83637 0.94865 0.96654 1.20769 0.86836 0.94215 0.94707 1.42405 1.19555 1.31096 1.45197 1.19657 0.99677 1.06635 1.12133 0.90443 1.25650 0.99460 0.98813 1.03066 1.69850 1.21510 1.23825 1.46954 0.85131 0.77607 0.77498 0.79026 1.20385 1.21988 1.20030 1.22078 0.95052 0.97169 0.88516 1.20586 1.01184 0.93480 0.88923 1.21461 1.13077 0.95851 0.98162 1.24237 0.99398 0.97829 0.93873 1.77260 1.23492 0.96514 1.17719 1.48729 1.50429 1.07997 1.08721 1.22255 1.04702 0.73327 1.05195 0.89339 0.92544 0.87431 0.86589 0.87879 0.85800 0.90681 0.94071 0.88929 0.95036 0.94807 0.79498 0.94016 0.90179 0.87655 0.84345 0.78274 0.90424 0.88314 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.69 71.98 0.63 -0.55 16 2 C -0.04 -0.57 1.91 -12.29 -0.02 -0.59 16 3 H 0.13 1.29 6.77 -2.39 -0.02 1.28 16 4 C 0.51 12.11 6.96 87.66 0.61 12.72 16 5 O -0.56 -19.31 13.17 -3.03 -0.04 -19.35 16 6 N -0.60 -12.13 2.19 -818.07 -1.79 -13.92 16 7 C 0.09 0.91 4.46 86.38 0.39 1.30 16 8 C -0.16 -2.04 5.78 30.30 0.18 -1.86 16 9 C 0.06 1.46 6.37 71.50 0.46 1.91 16 10 O -0.40 -13.92 9.18 -117.77 -1.08 -15.00 16 11 C 0.11 3.85 2.73 31.19 0.09 3.93 16 12 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 13 C 0.16 7.12 5.95 86.38 0.51 7.63 16 14 N -0.74 -41.25 5.49 -343.44 -1.88 -43.13 16 15 C -0.25 -14.83 9.99 84.03 0.84 -13.99 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 18 N -0.97 -62.42 13.06 21.65 0.28 -62.13 16 19 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.10 2.58 4.86 87.23 0.42 3.00 16 24 C 0.09 1.95 5.73 41.40 0.24 2.18 16 25 C -0.26 -6.92 9.14 21.99 0.20 -6.72 16 26 C 0.03 0.79 12.03 85.24 1.03 1.82 16 27 N -0.33 -8.75 12.58 -57.02 -0.72 -9.47 16 28 N -0.38 -8.07 4.01 -356.06 -1.43 -9.50 16 29 C 0.08 0.93 11.06 127.77 1.41 2.34 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.30 4.61 -2.39 -0.01 0.29 16 33 H 0.12 0.46 4.96 -2.39 -0.01 0.45 16 34 H 0.10 0.51 7.55 -2.39 -0.02 0.49 16 35 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.18 8.01 -2.38 -0.02 1.16 16 37 H 0.04 0.97 7.40 -2.39 -0.02 0.95 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.37 22.43 7.53 -92.71 -0.70 21.73 16 42 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.08 2.39 7.27 -2.39 -0.02 2.38 16 44 H 0.11 2.38 8.11 -2.38 -0.02 2.36 16 45 H 0.14 4.07 6.80 -2.91 -0.02 4.05 16 46 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.12 0.41 7.55 -2.39 -0.02 0.39 16 Total: -1.00 -87.41 385.77 3.06 -84.35 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.26 Total: 29.26 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 7.44 Total: 8.88 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -5.54 Total: -138.15 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.12 Total: -34.35 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -87.41 3.06 -84.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200536295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.730 kcal (2) G-P(sol) polarization free energy of solvation -87.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds