Wall clock time and date at job start Tue Mar 31 2020 19:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46361 * 2 1 4 4 C 1.50699 * 109.47171 * 240.00096 * 2 1 3 5 5 O 1.21275 * 119.99794 * 239.99761 * 4 2 1 6 6 N 1.34775 * 119.99804 * 59.99601 * 4 2 1 7 7 C 1.47503 * 118.76097 * 359.73246 * 6 4 2 8 8 C 1.53953 * 110.82105 * 138.25019 * 7 6 4 9 9 C 1.51536 * 109.72720 * 320.30957 * 8 7 6 10 10 O 1.42154 * 108.76558 * 91.29403 * 9 8 7 11 11 C 1.38022 * 119.43684 * 272.78284 * 10 9 8 12 12 H 1.09002 * 109.46735 * 303.42673 * 11 10 9 13 13 C 1.52998 * 109.47026 * 183.43249 * 11 10 9 14 14 N 1.46499 * 109.47309 * 64.98356 * 13 11 10 15 15 C 1.36934 * 120.00373 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99764 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00334 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99881 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47039 * 89.99844 * 19 17 15 21 21 H 1.48498 * 109.47068 * 210.00080 * 19 17 15 22 22 H 1.48497 * 109.47092 * 330.00393 * 19 17 15 23 23 C 1.45121 * 118.75379 * 179.97438 * 6 4 2 24 24 C 1.50700 * 109.47307 * 119.99795 * 2 1 3 25 25 C 1.35320 * 126.12605 * 85.02485 * 24 2 1 26 26 C 1.39866 * 107.91898 * 179.97438 * 25 24 2 27 27 N 1.30844 * 108.20609 * 0.02562 * 26 25 24 28 28 N 1.34951 * 126.12824 * 264.97480 * 24 2 1 29 29 C 1.46504 * 126.03463 * 0.04487 * 28 24 2 30 30 H 1.09009 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47373 * 299.99436 * 1 2 3 32 32 H 1.08994 * 109.47730 * 60.00163 * 1 2 3 33 33 H 1.08997 * 109.17041 * 258.77438 * 7 6 4 34 34 H 1.09003 * 109.16291 * 17.97463 * 7 6 4 35 35 H 1.08998 * 109.46096 * 200.18104 * 8 7 6 36 36 H 1.09002 * 109.27561 * 80.32525 * 8 7 6 37 37 H 1.08999 * 109.58730 * 331.50900 * 9 8 7 38 38 H 1.09002 * 109.70644 * 211.14656 * 9 8 7 39 39 H 1.08997 * 109.47265 * 184.98621 * 13 11 10 40 40 H 1.08997 * 109.46812 * 304.98803 * 13 11 10 41 41 H 0.96999 * 119.99696 * 0.02562 * 14 13 11 42 42 H 0.96993 * 120.00339 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.46591 * 29.31097 * 23 6 4 44 44 H 1.09002 * 109.46206 * 149.28659 * 23 6 4 45 45 H 1.07993 * 126.03961 * 359.93639 * 25 24 2 46 46 H 1.08004 * 125.89910 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.46927 * 270.02579 * 29 28 24 48 48 H 1.08994 * 109.47314 * 30.02415 * 29 28 24 49 49 H 1.08998 * 109.46715 * 150.02896 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8521 0.9479 -2.5580 8 6 1.3605 1.8888 -3.6655 9 6 2.8752 1.9316 -3.6449 10 8 3.3729 0.9296 -4.5219 11 6 3.5657 -0.3521 -4.0477 12 1 4.2362 -0.3247 -3.1888 13 6 4.1832 -1.2159 -5.1493 14 7 5.5222 -0.7153 -5.4695 15 6 6.2722 -1.3344 -6.4335 16 1 5.8768 -2.1921 -6.9574 17 6 7.5412 -0.8604 -6.7366 18 7 8.2623 -1.4558 -7.6628 19 14 8.2255 0.6225 -5.8299 20 1 8.9550 0.1688 -4.6186 21 1 9.1562 1.3611 -6.7207 22 1 7.1093 1.5163 -5.4297 23 6 2.2056 -0.9545 -3.6210 24 6 2.0324 -0.7104 1.2305 25 6 2.2090 -2.0452 1.3648 26 6 2.6882 -2.2881 2.6562 27 7 2.7949 -1.1403 3.2752 28 7 2.3876 -0.1291 2.3954 29 6 2.3523 1.3058 2.6886 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.1687 0.6408 -2.7850 34 1 0.8621 1.4779 -1.6055 35 1 0.9668 2.8915 -3.4992 36 1 1.0209 1.5213 -4.6338 37 1 3.2324 1.7415 -2.6328 38 1 3.2197 2.9112 -3.9762 39 1 4.2537 -2.2478 -4.8052 40 1 3.5563 -1.1719 -6.0398 41 1 5.8775 0.0547 -4.9987 42 1 9.1492 -1.1249 -7.8744 43 1 2.3359 -2.0095 -3.3799 44 1 1.4918 -0.8544 -4.4386 45 1 2.0137 -2.7913 0.6088 46 1 2.9278 -3.2560 3.0711 47 1 3.3085 1.7552 2.4200 48 1 1.5555 1.7751 2.1117 49 1 2.1669 1.4548 3.7524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200536296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:04 Heat of formation + Delta-G solvation = 38.219499 kcal Electronic energy + Delta-G solvation = -30557.329699 eV Core-core repulsion = 26522.940470 eV Total energy + Delta-G solvation = -4034.389229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71862 -40.62861 -38.68855 -36.01182 -34.79822 -34.58399 -33.28766 -32.84099 -31.16381 -29.68282 -28.88124 -26.96860 -26.82936 -25.93238 -24.45866 -22.48201 -21.77582 -21.38726 -21.09705 -20.41348 -19.08823 -17.67951 -17.54918 -17.05649 -16.62001 -16.34391 -15.91061 -15.77769 -14.97038 -14.84781 -14.71232 -14.34426 -14.16727 -14.02921 -13.91441 -13.54330 -13.39444 -13.08081 -12.97616 -12.75575 -12.67155 -12.57351 -12.55397 -12.29549 -12.01982 -11.90213 -11.72721 -11.51084 -11.20752 -10.93469 -10.82222 -10.76685 -10.39668 -10.07848 -9.85096 -9.57162 -9.53054 -9.44203 -8.84404 -8.71439 -8.58154 -7.15527 -5.70151 -3.04575 1.63962 2.21424 2.36293 2.67954 2.84183 3.44294 3.48723 3.50568 3.77926 3.92480 4.07053 4.30892 4.37606 4.47703 4.55181 4.59894 4.66846 4.73575 4.79792 4.95890 5.03603 5.05216 5.09121 5.10044 5.18151 5.22168 5.27493 5.33011 5.45426 5.52786 5.60011 5.62736 5.67542 5.67975 5.78074 5.82866 5.94058 5.99477 6.11631 6.34805 6.56751 6.57260 6.67804 6.78523 7.04687 7.54985 7.82186 7.93307 8.05626 8.48892 9.28391 10.00994 10.21571 11.48385 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003163 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.768978 B = 8850.318144 C = 9660.738217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.045 4.045 3 H 0.103 0.897 4 C 0.515 3.485 5 O -0.510 6.510 6 N -0.607 5.607 7 C 0.100 3.900 8 C -0.168 4.168 9 C 0.072 3.928 10 O -0.371 6.371 11 C 0.084 3.916 12 H 0.051 0.949 13 C 0.171 3.829 14 N -0.750 5.750 15 C -0.241 4.241 16 H 0.091 0.909 17 C 0.004 3.996 18 N -0.936 5.936 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.275 1.275 23 C 0.083 3.917 24 C 0.084 3.916 25 C -0.225 4.225 26 C 0.041 3.959 27 N -0.297 5.297 28 N -0.375 5.375 29 C 0.099 3.901 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.154 0.846 46 H 0.183 0.817 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.717 8.786 19.379 31.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.068 4.068 3 H 0.121 0.879 4 C 0.301 3.699 5 O -0.384 6.384 6 N -0.341 5.341 7 C -0.022 4.022 8 C -0.207 4.207 9 C -0.004 4.004 10 O -0.289 6.289 11 C 0.024 3.976 12 H 0.069 0.931 13 C 0.043 3.957 14 N -0.396 5.396 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.584 5.584 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.201 1.201 23 C -0.040 4.040 24 C -0.043 4.043 25 C -0.254 4.254 26 C -0.144 4.144 27 N -0.118 5.118 28 N -0.159 5.159 29 C -0.043 4.043 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.172 0.828 46 H 0.200 0.800 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.918 8.861 20.192 31.091 hybrid contribution 0.340 0.786 0.143 0.869 sum -21.578 9.647 20.335 31.181 Atomic orbital electron populations 1.22104 0.91157 1.04195 1.03556 1.19744 0.97968 0.99588 0.89514 0.87920 1.20160 0.80586 0.84958 0.84232 1.90777 1.36315 1.25569 1.85732 1.47845 1.51282 1.29059 1.05875 1.22342 0.93863 0.85798 1.00186 1.22600 0.98053 0.99907 1.00099 1.22117 0.92028 0.92140 0.94151 1.86435 1.84553 1.18114 1.39819 1.22338 0.94114 0.83163 0.97999 0.93117 1.20588 0.86952 0.94187 0.93975 1.42570 1.14288 1.36163 1.46547 1.19060 0.96180 1.10305 1.11490 0.89149 1.24637 0.96836 0.98942 0.98727 1.69700 1.11691 1.42647 1.34368 0.86552 0.78765 0.83930 0.79467 1.21196 1.21755 1.20094 1.22403 0.96604 0.98120 0.86921 1.20211 1.02378 0.93614 0.88103 1.21421 1.10959 0.94938 0.98076 1.23894 0.99612 0.97038 0.93900 1.77343 1.22382 0.95798 1.16297 1.48384 1.51525 1.06726 1.09284 1.21824 1.03024 0.75671 1.03777 0.91082 0.91400 0.90038 0.90878 0.89696 0.89594 0.89677 0.93697 0.89294 0.93806 0.94623 0.80395 0.93127 0.88477 0.89546 0.82802 0.79986 0.90818 0.89827 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.69 37.16 0.32 -0.53 16 2 C -0.04 -0.38 1.92 -92.92 -0.18 -0.56 16 3 H 0.10 0.67 6.78 -51.93 -0.35 0.32 16 4 C 0.51 6.04 6.97 -10.99 -0.08 5.96 16 5 O -0.51 -8.08 13.16 5.56 0.07 -8.01 16 6 N -0.61 -6.25 2.18 -172.28 -0.38 -6.62 16 7 C 0.10 0.65 4.50 -3.00 -0.01 0.64 16 8 C -0.17 -1.26 5.79 -26.97 -0.16 -1.42 16 9 C 0.07 0.82 6.38 36.42 0.23 1.05 16 10 O -0.37 -5.97 9.38 -26.56 -0.25 -6.22 16 11 C 0.08 1.38 2.67 -25.81 -0.07 1.31 16 12 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 13 C 0.17 3.45 5.92 -4.04 -0.02 3.43 16 14 N -0.75 -18.96 5.34 -59.91 -0.32 -19.28 16 15 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 16 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 18 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 19 Si 0.88 23.10 27.74 -169.99 -4.71 18.38 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 23 C 0.08 1.05 4.86 -3.86 -0.02 1.04 16 24 C 0.08 0.94 5.73 -82.26 -0.47 0.47 16 25 C -0.23 -2.84 9.14 -40.01 -0.37 -3.21 16 26 C 0.04 0.49 12.03 -17.36 -0.21 0.28 16 27 N -0.30 -3.86 12.58 30.63 0.39 -3.47 16 28 N -0.38 -4.12 4.01 -63.88 -0.26 -4.38 16 29 C 0.10 0.63 11.06 59.85 0.66 1.29 16 30 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.08 0.31 4.59 -51.93 -0.24 0.07 16 33 H 0.07 0.36 7.56 -51.93 -0.39 -0.04 16 34 H 0.08 0.37 4.94 -51.93 -0.26 0.11 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.04 0.50 7.41 -51.93 -0.38 0.12 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.36 9.16 5.52 -40.82 -0.23 8.94 16 42 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 43 H 0.10 1.34 7.27 -51.93 -0.38 0.96 16 44 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.15 2.02 6.80 -52.49 -0.36 1.67 16 46 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.30 7.55 -51.93 -0.39 -0.09 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -38.42 382.96 -7.16 -45.58 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.63 Total: 5.19 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.62 Total: 2.52 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.21 Total: -63.22 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.18 Total: -14.23 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.42 -7.16 -45.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200536296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.804 kcal (2) G-P(sol) polarization free energy of solvation -38.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds