Wall clock time and date at job start Tue Mar 31 2020 19:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46361 * 2 1 4 4 C 1.50699 * 109.47171 * 240.00096 * 2 1 3 5 5 O 1.21275 * 119.99794 * 239.99761 * 4 2 1 6 6 N 1.34775 * 119.99804 * 59.99601 * 4 2 1 7 7 C 1.47503 * 118.76097 * 359.73246 * 6 4 2 8 8 C 1.53953 * 110.82105 * 138.25019 * 7 6 4 9 9 C 1.51536 * 109.72720 * 320.30957 * 8 7 6 10 10 O 1.42154 * 108.76558 * 91.29403 * 9 8 7 11 11 C 1.38022 * 119.43684 * 272.78284 * 10 9 8 12 12 H 1.09002 * 109.46735 * 303.42673 * 11 10 9 13 13 C 1.52998 * 109.47026 * 183.43249 * 11 10 9 14 14 N 1.46499 * 109.47309 * 64.98356 * 13 11 10 15 15 C 1.36934 * 120.00373 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99764 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00334 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99881 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47039 * 89.99844 * 19 17 15 21 21 H 1.48498 * 109.47068 * 210.00080 * 19 17 15 22 22 H 1.48497 * 109.47092 * 330.00393 * 19 17 15 23 23 C 1.45121 * 118.75379 * 179.97438 * 6 4 2 24 24 C 1.50700 * 109.47307 * 119.99795 * 2 1 3 25 25 C 1.35320 * 126.12605 * 85.02485 * 24 2 1 26 26 C 1.39866 * 107.91898 * 179.97438 * 25 24 2 27 27 N 1.30844 * 108.20609 * 0.02562 * 26 25 24 28 28 N 1.34951 * 126.12824 * 264.97480 * 24 2 1 29 29 C 1.46504 * 126.03463 * 0.04487 * 28 24 2 30 30 H 1.09009 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47373 * 299.99436 * 1 2 3 32 32 H 1.08994 * 109.47730 * 60.00163 * 1 2 3 33 33 H 1.08997 * 109.17041 * 258.77438 * 7 6 4 34 34 H 1.09003 * 109.16291 * 17.97463 * 7 6 4 35 35 H 1.08998 * 109.46096 * 200.18104 * 8 7 6 36 36 H 1.09002 * 109.27561 * 80.32525 * 8 7 6 37 37 H 1.08999 * 109.58730 * 331.50900 * 9 8 7 38 38 H 1.09002 * 109.70644 * 211.14656 * 9 8 7 39 39 H 1.08997 * 109.47265 * 184.98621 * 13 11 10 40 40 H 1.08997 * 109.46812 * 304.98803 * 13 11 10 41 41 H 0.96999 * 119.99696 * 0.02562 * 14 13 11 42 42 H 0.96993 * 120.00339 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.46591 * 29.31097 * 23 6 4 44 44 H 1.09002 * 109.46206 * 149.28659 * 23 6 4 45 45 H 1.07993 * 126.03961 * 359.93639 * 25 24 2 46 46 H 1.08004 * 125.89910 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.46927 * 270.02579 * 29 28 24 48 48 H 1.08994 * 109.47314 * 30.02415 * 29 28 24 49 49 H 1.08998 * 109.46715 * 150.02896 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8521 0.9479 -2.5580 8 6 1.3605 1.8888 -3.6655 9 6 2.8752 1.9316 -3.6449 10 8 3.3729 0.9296 -4.5219 11 6 3.5657 -0.3521 -4.0477 12 1 4.2362 -0.3247 -3.1888 13 6 4.1832 -1.2159 -5.1493 14 7 5.5222 -0.7153 -5.4695 15 6 6.2722 -1.3344 -6.4335 16 1 5.8768 -2.1921 -6.9574 17 6 7.5412 -0.8604 -6.7366 18 7 8.2623 -1.4558 -7.6628 19 14 8.2255 0.6225 -5.8299 20 1 8.9550 0.1688 -4.6186 21 1 9.1562 1.3611 -6.7207 22 1 7.1093 1.5163 -5.4297 23 6 2.2056 -0.9545 -3.6210 24 6 2.0324 -0.7104 1.2305 25 6 2.2090 -2.0452 1.3648 26 6 2.6882 -2.2881 2.6562 27 7 2.7949 -1.1403 3.2752 28 7 2.3876 -0.1291 2.3954 29 6 2.3523 1.3058 2.6886 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.1687 0.6408 -2.7850 34 1 0.8621 1.4779 -1.6055 35 1 0.9668 2.8915 -3.4992 36 1 1.0209 1.5213 -4.6338 37 1 3.2324 1.7415 -2.6328 38 1 3.2197 2.9112 -3.9762 39 1 4.2537 -2.2478 -4.8052 40 1 3.5563 -1.1719 -6.0398 41 1 5.8775 0.0547 -4.9987 42 1 9.1492 -1.1249 -7.8744 43 1 2.3359 -2.0095 -3.3799 44 1 1.4918 -0.8544 -4.4386 45 1 2.0137 -2.7913 0.6088 46 1 2.9278 -3.2560 3.0711 47 1 3.3085 1.7552 2.4200 48 1 1.5555 1.7751 2.1117 49 1 2.1669 1.4548 3.7524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200536296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:03 Heat of formation + Delta-G solvation = 10.022451 kcal Electronic energy + Delta-G solvation = -30558.552414 eV Core-core repulsion = 26522.940470 eV Total energy + Delta-G solvation = -4035.611944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53936 -41.53656 -39.75545 -37.11012 -36.40783 -35.34612 -34.32723 -33.87822 -32.97888 -30.73014 -29.94409 -27.81441 -27.58820 -27.01718 -25.50253 -24.05831 -22.86849 -22.36610 -22.21359 -21.23786 -19.88161 -19.81100 -18.31340 -18.01736 -17.60702 -17.39463 -16.92060 -16.50502 -16.39434 -16.13592 -15.67675 -15.42090 -15.20896 -14.92854 -14.84130 -14.72053 -14.65555 -14.28241 -13.95220 -13.80603 -13.71082 -13.43381 -13.35851 -13.24015 -13.16856 -12.89546 -12.84159 -12.55442 -12.41776 -12.27035 -12.12299 -11.94775 -11.83016 -11.62752 -11.44211 -11.05161 -10.76261 -10.57118 -10.24907 -9.65642 -9.43370 -9.33803 -8.05562 -5.38616 0.81356 1.33650 1.36863 1.45046 1.48741 1.52468 1.84769 2.01695 2.45629 2.69128 3.20899 3.26194 3.40983 3.47792 3.71828 3.80624 3.89037 3.99144 4.01685 4.04326 4.08183 4.26864 4.28780 4.33155 4.38977 4.45641 4.50705 4.63736 4.67167 4.69132 4.70966 4.74346 4.82793 4.85350 4.85951 4.89140 5.06787 5.14356 5.19833 5.22728 5.27498 5.51448 5.70716 5.71117 6.05404 6.18023 6.26233 6.69500 6.71562 7.03758 7.09081 7.79710 7.99458 9.15994 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003163 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.768978 B = 8850.318144 C = 9660.738217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 H 0.134 0.866 4 C 0.508 3.492 5 O -0.562 6.562 6 N -0.602 5.602 7 C 0.092 3.908 8 C -0.159 4.159 9 C 0.061 3.939 10 O -0.399 6.399 11 C 0.102 3.898 12 H 0.025 0.975 13 C 0.164 3.836 14 N -0.754 5.754 15 C -0.235 4.235 16 H 0.060 0.940 17 C -0.062 4.062 18 N -0.982 5.982 19 Si 0.954 3.046 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.255 1.255 23 C 0.095 3.905 24 C 0.087 3.913 25 C -0.256 4.256 26 C 0.030 3.970 27 N -0.328 5.328 28 N -0.375 5.375 29 C 0.085 3.915 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.365 0.635 42 H 0.259 0.741 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.138 0.862 46 H 0.200 0.800 47 H 0.078 0.922 48 H 0.120 0.880 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.459 12.535 20.980 35.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 H 0.151 0.849 4 C 0.296 3.704 5 O -0.440 6.440 6 N -0.334 5.334 7 C -0.028 4.028 8 C -0.197 4.197 9 C -0.015 4.015 10 O -0.318 6.318 11 C 0.042 3.958 12 H 0.043 0.957 13 C 0.038 3.962 14 N -0.400 5.400 15 C -0.366 4.366 16 H 0.078 0.922 17 C -0.254 4.254 18 N -0.633 5.633 19 Si 0.781 3.219 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.180 1.180 23 C -0.030 4.030 24 C -0.042 4.042 25 C -0.286 4.286 26 C -0.154 4.154 27 N -0.150 5.150 28 N -0.158 5.158 29 C -0.055 4.055 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.156 0.844 46 H 0.216 0.784 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.733 12.659 21.829 35.334 hybrid contribution 1.142 -0.386 -0.400 1.269 sum -23.592 12.274 21.429 34.153 Atomic orbital electron populations 1.22140 0.88426 1.04006 1.05841 1.19858 0.99897 0.99933 0.86256 0.84855 1.20815 0.79721 0.84455 0.85427 1.90769 1.38715 1.27999 1.86530 1.47914 1.51090 1.29902 1.04533 1.22773 0.94226 0.84225 1.01625 1.22534 0.94918 1.02228 1.00005 1.22468 0.94801 0.90885 0.93346 1.86357 1.85458 1.18313 1.41695 1.21893 0.95380 0.83602 0.94949 0.95681 1.20746 0.84984 0.94956 0.95558 1.42592 1.15812 1.35994 1.45569 1.19073 0.96646 1.09349 1.11554 0.92187 1.25468 0.97319 1.02518 1.00054 1.69871 1.12194 1.44753 1.36450 0.85418 0.78323 0.80200 0.77967 1.20821 1.21482 1.18026 1.22073 0.95107 0.97210 0.88569 1.20592 1.01130 0.93432 0.89017 1.21462 1.13015 0.95909 0.98174 1.24230 0.99439 0.97824 0.93894 1.77266 1.23635 0.96510 1.17600 1.48732 1.50382 1.07947 1.08777 1.22261 1.04761 0.73273 1.05182 0.92648 0.89378 0.87382 0.88049 0.86533 0.85828 0.90689 0.93720 0.88448 0.94280 0.94390 0.80255 0.93212 0.90206 0.87615 0.84383 0.78377 0.90297 0.86167 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.69 71.98 0.63 -0.37 16 2 C -0.04 -0.50 1.92 -12.29 -0.02 -0.52 16 3 H 0.13 1.02 6.78 -2.38 -0.02 1.00 16 4 C 0.51 11.11 6.97 87.66 0.61 11.72 16 5 O -0.56 -18.26 13.16 -3.01 -0.04 -18.30 16 6 N -0.60 -10.82 2.18 -817.36 -1.78 -12.60 16 7 C 0.09 0.71 4.50 86.51 0.39 1.10 16 8 C -0.16 -1.61 5.79 30.44 0.18 -1.44 16 9 C 0.06 1.17 6.38 71.50 0.46 1.63 16 10 O -0.40 -12.23 9.38 -117.95 -1.11 -13.34 16 11 C 0.10 3.33 2.67 31.19 0.08 3.41 16 12 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 13 C 0.16 6.78 5.92 86.38 0.51 7.29 16 14 N -0.75 -38.61 5.34 -343.47 -1.83 -40.44 16 15 C -0.24 -14.28 10.47 84.03 0.88 -13.40 16 16 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 17 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 18 N -0.98 -65.17 13.97 21.65 0.30 -64.86 16 19 Si 0.95 48.16 27.74 68.60 1.90 50.06 16 20 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 23 C 0.10 2.33 4.86 87.24 0.42 2.75 16 24 C 0.09 1.83 5.73 41.41 0.24 2.06 16 25 C -0.26 -6.65 9.14 21.99 0.20 -6.45 16 26 C 0.03 0.75 12.03 85.23 1.02 1.78 16 27 N -0.33 -8.43 12.58 -57.02 -0.72 -9.14 16 28 N -0.37 -7.57 4.01 -356.02 -1.43 -8.99 16 29 C 0.08 0.81 11.06 127.77 1.41 2.22 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.11 0.16 4.59 -2.39 -0.01 0.15 16 33 H 0.10 0.34 7.56 -2.39 -0.02 0.32 16 34 H 0.12 0.21 4.94 -2.39 -0.01 0.20 16 35 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.98 8.01 -2.39 -0.02 0.97 16 37 H 0.04 0.86 7.41 -2.39 -0.02 0.84 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.36 18.26 5.52 -92.71 -0.51 17.75 16 42 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 43 H 0.08 2.25 7.27 -2.39 -0.02 2.23 16 44 H 0.11 2.17 8.11 -2.39 -0.02 2.15 16 45 H 0.14 3.93 6.80 -2.91 -0.02 3.91 16 46 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 47 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.12 0.23 7.55 -2.39 -0.02 0.21 16 49 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -89.26 382.96 3.16 -86.10 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.39 Total: 23.11 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 7.48 Total: 8.41 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -5.46 Total: -136.04 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.15 Total: -31.63 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.90 Total: 50.06 kcal Total: -89.26 3.16 -86.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200536296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.118 kcal (2) G-P(sol) polarization free energy of solvation -89.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds