Wall clock time and date at job start Tue Mar 31 2020 19:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47085 * 2 1 4 4 C 1.52998 * 109.46850 * 119.99919 * 2 1 3 5 5 C 1.50699 * 109.47194 * 294.99832 * 4 2 1 6 6 C 1.34670 * 126.58561 * 85.02625 * 5 4 2 7 7 N 1.34130 * 108.01730 * 179.97438 * 6 5 4 8 8 C 1.30507 * 109.25717 * 359.97438 * 7 6 5 9 9 N 1.35041 * 108.69410 * 359.76794 * 8 7 6 10 10 H 0.97001 * 126.39434 * 180.26376 * 9 8 7 11 11 C 1.50698 * 109.47131 * 240.00106 * 2 1 3 12 12 O 1.21279 * 120.00073 * 239.99965 * 11 2 1 13 13 N 1.34780 * 119.99805 * 60.00156 * 11 2 1 14 14 C 1.47502 * 118.76206 * 359.97438 * 13 11 2 15 15 C 1.53570 * 111.02842 * 138.37584 * 14 13 11 16 16 C 1.51536 * 109.57569 * 320.01742 * 15 14 13 17 17 O 1.42159 * 108.75535 * 91.40977 * 16 15 14 18 18 C 1.38081 * 119.44880 * 272.79340 * 17 16 15 19 19 H 1.09004 * 109.44836 * 303.40631 * 18 17 16 20 20 C 1.52996 * 109.49047 * 183.40844 * 18 17 16 21 21 N 1.46499 * 109.47586 * 64.98107 * 20 18 17 22 22 C 1.36939 * 120.00387 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99450 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00181 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99712 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99921 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46716 * 90.00123 * 26 24 22 28 28 H 1.48498 * 109.47019 * 209.99710 * 26 24 22 29 29 H 1.48501 * 109.47196 * 330.00020 * 26 24 22 30 30 C 1.45128 * 118.75646 * 180.02562 * 13 11 2 31 31 H 1.09001 * 109.47298 * 300.00342 * 1 2 3 32 32 H 1.09006 * 109.47176 * 59.99730 * 1 2 3 33 33 H 1.08999 * 109.47085 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46931 * 55.00414 * 4 2 1 35 35 H 1.09004 * 109.46900 * 175.00001 * 4 2 1 36 36 H 1.07992 * 125.99500 * 359.96530 * 6 5 4 37 37 H 1.07998 * 125.64671 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.16762 * 17.97658 * 14 13 11 39 39 H 1.09007 * 109.12595 * 258.74471 * 14 13 11 40 40 H 1.09000 * 109.45269 * 199.98925 * 15 14 13 41 41 H 1.08994 * 109.45387 * 80.05033 * 15 14 13 42 42 H 1.09000 * 109.59061 * 211.18370 * 16 15 14 43 43 H 1.08993 * 109.59469 * 331.62480 * 16 15 14 44 44 H 1.08997 * 109.47421 * 184.98566 * 20 18 17 45 45 H 1.09010 * 109.47026 * 304.98106 * 20 18 17 46 46 H 0.97000 * 119.99621 * 0.02562 * 21 20 18 47 47 H 0.97002 * 120.00240 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.45883 * 29.30595 * 30 13 11 49 49 H 1.08996 * 109.45818 * 149.27963 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.4665 -0.0213 3.1303 7 7 0.5105 0.8297 4.1661 8 6 1.6682 1.4320 4.1794 9 7 2.4060 0.9746 3.1450 10 1 3.3086 1.2470 2.9170 11 6 2.0324 -0.7104 -1.2305 12 8 2.7296 -1.6964 -1.1192 13 7 1.7068 -0.2498 -2.4546 14 6 0.8568 0.9512 -2.5581 15 6 1.3601 1.8887 -3.6654 16 6 2.8747 1.9320 -3.6445 17 8 3.3728 0.9304 -4.5218 18 6 3.5658 -0.3521 -4.0480 19 1 4.2365 -0.3247 -3.1891 20 6 4.1830 -1.2159 -5.1497 21 7 5.5220 -0.7154 -5.4701 22 6 6.2719 -1.3345 -6.4343 23 1 5.8762 -2.1920 -6.9582 24 6 7.5409 -0.8605 -6.7376 25 7 8.2613 -1.4553 -7.6647 26 14 8.2254 0.6223 -5.8309 27 1 8.9551 0.1683 -4.6197 28 1 9.1561 1.3609 -6.7216 29 1 7.1093 1.5162 -5.4304 30 6 2.2048 -0.9551 -3.6211 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7198 1.2951 35 1 3.1263 -0.7995 1.2056 36 1 -0.3652 -0.6576 2.8667 37 1 1.9849 2.1711 4.9004 38 1 0.8701 1.4822 -1.6062 39 1 -0.1653 0.6471 -2.7839 40 1 0.9660 2.8913 -3.4992 41 1 1.0208 1.5216 -4.6339 42 1 3.2170 2.9120 -3.9770 43 1 3.2319 1.7419 -2.6324 44 1 4.2535 -2.2478 -4.8058 45 1 3.5559 -1.1717 -6.0402 46 1 5.8775 0.0546 -4.9993 47 1 9.1482 -1.1244 -7.8764 48 1 2.3343 -2.0101 -3.3797 49 1 1.4908 -0.8545 -4.4385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201611405.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:46 Heat of formation + Delta-G solvation = 3.340507 kcal Electronic energy + Delta-G solvation = -30056.657896 eV Core-core repulsion = 26020.756201 eV Total energy + Delta-G solvation = -4035.901695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45343 -40.92622 -38.82408 -35.99295 -35.38316 -34.80185 -32.95079 -32.81934 -31.18026 -30.50732 -28.99099 -27.27634 -26.62838 -25.63069 -23.67052 -22.17451 -21.84317 -21.51312 -21.15107 -21.04472 -19.21997 -18.31085 -17.69424 -17.39292 -16.70009 -16.51901 -16.11897 -15.50971 -15.30026 -14.80883 -14.75710 -14.47477 -14.33853 -14.02825 -13.88079 -13.66942 -13.48097 -13.26449 -12.94531 -12.92297 -12.64243 -12.47825 -12.36557 -12.17997 -11.88563 -11.64934 -11.57787 -11.44624 -11.19678 -10.92221 -10.84603 -10.40947 -10.38126 -10.33528 -10.09442 -9.83832 -9.56611 -9.54872 -8.86507 -8.73170 -8.69918 -7.17571 -5.72046 -3.06534 1.63663 2.38914 2.64174 2.78021 2.84896 3.41642 3.46094 3.48310 3.77829 3.99878 4.33636 4.38181 4.42741 4.47813 4.55864 4.64595 4.68762 4.77968 4.84762 4.92152 5.04333 5.15403 5.16035 5.20407 5.29177 5.29367 5.32763 5.37418 5.39932 5.46916 5.58067 5.66426 5.68033 5.74954 5.77573 5.83402 5.92858 5.94045 5.98222 6.35480 6.37158 6.55039 6.66477 6.97402 7.07290 7.68789 7.81429 7.94825 8.03791 8.46904 9.26370 9.98915 10.19585 11.46448 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002663 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.612210 B =10512.691787 C =11112.626917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.027 4.027 5 C -0.017 4.017 6 C -0.022 4.022 7 N -0.495 5.495 8 C 0.181 3.819 9 N -0.567 5.567 10 H 0.420 0.580 11 C 0.511 3.489 12 O -0.530 6.530 13 N -0.607 5.607 14 C 0.102 3.898 15 C -0.169 4.169 16 C 0.073 3.927 17 O -0.371 6.371 18 C 0.085 3.915 19 H 0.050 0.950 20 C 0.170 3.830 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.091 0.909 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.275 1.275 30 C 0.081 3.919 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.169 0.831 37 H 0.207 0.793 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.036 0.964 46 H 0.363 0.637 47 H 0.259 0.741 48 H 0.096 0.904 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.687 9.142 20.895 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.125 4.125 3 H 0.111 0.889 4 C -0.066 4.066 5 C -0.133 4.133 6 C -0.170 4.170 7 N -0.214 5.214 8 C -0.103 4.103 9 N -0.170 5.170 10 H 0.258 0.742 11 C 0.298 3.702 12 O -0.406 6.406 13 N -0.340 5.340 14 C -0.020 4.020 15 C -0.207 4.207 16 C -0.004 4.004 17 O -0.290 6.290 18 C 0.025 3.975 19 H 0.068 0.932 20 C 0.043 3.957 21 N -0.396 5.396 22 C -0.370 4.370 23 H 0.108 0.892 24 C -0.192 4.192 25 N -0.584 5.584 26 Si 0.713 3.287 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.201 1.201 30 C -0.042 4.042 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.196 0.804 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.914 8.597 21.155 30.299 hybrid contribution 1.582 1.200 0.209 1.997 sum -18.332 9.798 21.364 29.807 Atomic orbital electron populations 1.22188 0.92382 1.03482 1.03745 1.21248 0.98337 1.00405 0.92548 0.88903 1.19848 1.02243 0.97684 0.86819 1.21262 0.94022 0.98515 0.99475 1.22118 0.97604 1.02523 0.94765 1.70302 1.19528 1.10164 1.21365 1.24982 0.88788 1.02829 0.93704 1.43354 1.16501 1.33045 1.24125 0.74239 1.20677 0.80114 0.84750 0.84643 1.90747 1.37289 1.26179 1.86353 1.47908 1.51269 1.28759 1.06110 1.22244 0.93825 0.85711 1.00236 1.22542 0.98066 1.00007 1.00133 1.22118 0.92084 0.92080 0.94082 1.86446 1.84544 1.18112 1.39863 1.22355 0.94093 0.83158 0.97924 0.93185 1.20592 0.86948 0.94179 0.94018 1.42573 1.14285 1.36166 1.46542 1.19062 0.96164 1.10307 1.11491 0.89157 1.24644 0.96861 0.98948 0.98744 1.69700 1.11711 1.42667 1.34290 0.86543 0.78745 0.83926 0.79439 1.21234 1.21771 1.20082 1.22417 0.96585 0.98092 0.87155 0.90719 0.91024 0.91692 0.88534 0.90100 0.81415 0.77657 0.89466 0.91071 0.89634 0.89735 0.89347 0.93692 0.93825 0.94619 0.80408 0.93127 0.88583 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.39 37.16 0.31 -0.66 16 2 C -0.10 -0.80 1.89 -91.77 -0.17 -0.97 16 3 H 0.09 0.63 7.41 -51.93 -0.38 0.25 16 4 C -0.03 -0.22 4.60 -27.88 -0.13 -0.34 16 5 C -0.02 -0.13 6.09 -81.61 -0.50 -0.63 16 6 C -0.02 -0.20 10.10 -17.81 -0.18 -0.38 16 7 N -0.49 -4.93 11.25 -14.67 -0.17 -5.10 16 8 C 0.18 1.25 13.04 -90.37 -1.18 0.07 16 9 N -0.57 -3.49 6.15 -10.30 -0.06 -3.55 16 10 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 11 C 0.51 5.82 7.04 -10.98 -0.08 5.74 16 12 O -0.53 -8.18 15.35 5.56 0.09 -8.10 16 13 N -0.61 -6.44 2.19 -172.44 -0.38 -6.82 16 14 C 0.10 0.74 4.46 -3.20 -0.01 0.73 16 15 C -0.17 -1.38 5.79 -27.18 -0.16 -1.54 16 16 C 0.07 0.84 6.38 36.42 0.23 1.08 16 17 O -0.37 -6.03 9.39 -26.77 -0.25 -6.28 16 18 C 0.08 1.40 2.68 -25.76 -0.07 1.33 16 19 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 20 C 0.17 3.44 5.92 -4.04 -0.02 3.42 16 21 N -0.75 -18.83 5.34 -59.91 -0.32 -19.15 16 22 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 23 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 24 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 25 N -0.94 -30.05 13.97 55.49 0.78 -29.28 16 26 Si 0.88 22.85 27.74 -169.99 -4.71 18.14 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.27 -6.79 6.52 56.52 0.37 -6.42 16 30 C 0.08 1.06 4.87 -3.80 -0.02 1.04 16 31 H 0.07 0.44 6.18 -51.93 -0.32 0.12 16 32 H 0.07 0.37 4.61 -51.93 -0.24 0.13 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 36 H 0.17 1.24 8.02 -52.49 -0.42 0.82 16 37 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.09 0.49 4.96 -51.93 -0.26 0.23 16 39 H 0.07 0.42 7.55 -51.93 -0.39 0.03 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.51 7.40 -51.93 -0.38 0.13 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 46 H 0.36 9.07 5.52 -40.82 -0.23 8.84 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 48 H 0.10 1.35 7.27 -51.93 -0.38 0.97 16 49 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -37.78 382.70 -9.08 -46.86 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.59 Total: 5.82 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.23 Total: 1.69 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.15 Total: -63.89 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.17 Total: -14.38 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.78 -9.08 -46.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201611405.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.199 kcal (2) G-P(sol) polarization free energy of solvation -37.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds