Wall clock time and date at job start Tue Mar 31 2020 19:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47339 * 2 1 4 4 C 1.53000 * 109.47565 * 239.99828 * 2 1 3 5 5 C 1.50696 * 109.47320 * 64.99867 * 4 2 1 6 6 C 1.34669 * 126.58696 * 85.02420 * 5 4 2 7 7 N 1.34129 * 108.02107 * 179.97438 * 6 5 4 8 8 C 1.30503 * 109.25081 * 0.02562 * 7 6 5 9 9 N 1.35039 * 108.70045 * 359.76597 * 8 7 6 10 10 H 0.97003 * 126.39613 * 180.27083 * 9 8 7 11 11 C 1.50707 * 109.46930 * 119.99658 * 2 1 3 12 12 O 1.21273 * 119.99834 * 107.01157 * 11 2 1 13 13 N 1.34780 * 119.99888 * 287.01331 * 11 2 1 14 14 C 1.47490 * 118.74313 * 353.66450 * 13 11 2 15 15 C 1.53577 * 111.03752 * 138.39292 * 14 13 11 16 16 C 1.51537 * 109.56281 * 319.98482 * 15 14 13 17 17 O 1.42152 * 108.75071 * 91.41004 * 16 15 14 18 18 C 1.38006 * 119.44278 * 272.76354 * 17 16 15 19 19 H 1.08998 * 109.47427 * 303.43551 * 18 17 16 20 20 C 1.53003 * 109.46828 * 183.43694 * 18 17 16 21 21 N 1.46500 * 109.47185 * 65.00441 * 20 18 17 22 22 C 1.36937 * 120.00003 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00038 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00034 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00158 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99866 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47436 * 90.00079 * 26 24 22 28 28 H 1.48503 * 109.47088 * 209.99914 * 26 24 22 29 29 H 1.48500 * 109.47083 * 330.00086 * 26 24 22 30 30 C 1.45122 * 118.75486 * 173.63983 * 13 11 2 31 31 H 1.08995 * 109.47158 * 295.54973 * 1 2 3 32 32 H 1.09004 * 109.46729 * 55.54719 * 1 2 3 33 33 H 1.08998 * 109.47334 * 175.54115 * 1 2 3 34 34 H 1.08997 * 109.47014 * 185.00498 * 4 2 1 35 35 H 1.09005 * 109.46620 * 304.99835 * 4 2 1 36 36 H 1.08006 * 125.99167 * 359.96889 * 6 5 4 37 37 H 1.08006 * 125.64584 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.18898 * 17.97775 * 14 13 11 39 39 H 1.09000 * 109.14236 * 258.77472 * 14 13 11 40 40 H 1.08998 * 109.45090 * 199.96275 * 15 14 13 41 41 H 1.08998 * 109.44889 * 80.00796 * 15 14 13 42 42 H 1.09000 * 109.58832 * 211.19552 * 16 15 14 43 43 H 1.08997 * 109.58986 * 331.62983 * 16 15 14 44 44 H 1.09008 * 109.47249 * 184.99974 * 20 18 17 45 45 H 1.08993 * 109.47284 * 305.00000 * 20 18 17 46 46 H 0.97002 * 119.99835 * 359.97438 * 21 20 18 47 47 H 0.97002 * 119.99864 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.45522 * 149.25844 * 30 13 11 49 49 H 1.09001 * 109.45747 * 29.30812 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4766 6 6 2.3077 1.0925 -3.0219 7 7 1.6247 1.5034 -4.1007 8 6 0.5603 0.7621 -4.2441 9 7 0.5354 -0.1560 -3.2541 10 1 -0.1407 -0.8382 -3.1187 11 6 2.0323 -0.7104 1.2306 12 8 2.5241 -1.8148 1.1349 13 7 1.9349 -0.1183 2.4374 14 6 1.4640 1.2777 2.5066 15 6 0.4897 1.4735 3.6775 16 6 -0.4290 0.2727 3.7793 17 8 0.1539 -0.6747 4.6644 18 6 1.0459 -1.6049 4.1709 19 1 0.5727 -2.1727 3.3697 20 6 1.4627 -2.5574 5.2934 21 7 0.2997 -3.3316 5.7340 22 6 0.4316 -4.2544 6.7371 23 1 1.3932 -4.4119 7.2030 24 6 -0.6705 -4.9876 7.1550 25 7 -0.5438 -5.8743 8.1194 26 14 -2.3337 -4.7148 6.3495 27 1 -2.4774 -5.6293 5.1884 28 1 -3.4113 -4.9909 7.3333 29 1 -2.4346 -3.3074 5.8867 30 6 2.2968 -0.8786 3.6193 31 1 -0.3633 0.4432 0.9271 32 1 -0.3633 0.5814 -0.8475 33 1 -0.3634 -1.0245 -0.0799 34 1 3.1264 -0.7995 -1.2054 35 1 1.6055 -1.7199 -1.2950 36 1 3.2302 1.5177 -2.6549 37 1 -0.1763 0.8632 -5.0275 38 1 0.9592 1.5322 1.5747 39 1 2.3211 1.9378 2.6402 40 1 -0.1043 2.3718 3.5090 41 1 1.0530 1.5794 4.6046 42 1 -1.3986 0.5861 4.1662 43 1 -0.5541 -0.1764 2.7941 44 1 2.2331 -3.2359 4.9269 45 1 1.8547 -1.9815 6.1317 46 1 -0.5640 -3.1899 5.3158 47 1 -1.3139 -6.3869 8.4111 48 1 2.6892 -0.2031 4.3796 49 1 3.0583 -1.6137 3.3591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201611413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:00 Heat of formation + Delta-G solvation = -27.025803 kcal Electronic energy + Delta-G solvation = -30151.030957 eV Core-core repulsion = 26113.812480 eV Total energy + Delta-G solvation = -4037.218477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.99312 -41.83135 -39.88825 -37.08537 -36.35206 -36.14882 -34.33069 -33.29434 -33.00697 -31.28056 -30.36023 -28.02451 -27.42535 -26.78285 -24.92207 -23.57421 -22.74024 -22.43928 -22.32941 -21.53658 -19.83769 -19.81288 -18.96027 -18.21473 -17.82647 -17.57075 -16.87647 -16.58386 -16.31984 -16.21692 -15.70774 -15.52047 -15.18289 -15.05993 -14.87647 -14.66690 -14.59120 -14.30083 -14.05688 -13.88585 -13.77583 -13.60066 -13.47468 -13.25749 -13.13709 -12.87094 -12.62031 -12.48838 -12.36343 -12.20155 -12.09993 -11.93026 -11.82101 -11.44701 -11.04816 -10.93331 -10.92657 -10.77849 -10.58471 -9.66543 -9.33865 -9.29663 -8.05036 -5.38480 1.10588 1.34271 1.37880 1.46241 1.50089 1.88870 2.23847 2.31448 2.46268 2.67294 3.26368 3.29891 3.46381 3.73645 3.80907 3.85151 3.88930 3.94363 4.01677 4.03910 4.15585 4.21454 4.26933 4.28975 4.38018 4.42562 4.50784 4.63099 4.65831 4.69237 4.69973 4.75949 4.81114 4.83956 4.86270 5.01825 5.05369 5.09705 5.11489 5.22115 5.36257 5.51102 5.71258 5.80428 6.18101 6.25184 6.57036 6.69780 7.03981 7.08090 7.16132 7.79515 7.99835 9.16368 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.002646 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.349446 B =10579.173690 C =11023.404018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.123 0.877 4 C -0.020 4.020 5 C -0.013 4.013 6 C -0.043 4.043 7 N -0.537 5.537 8 C 0.189 3.811 9 N -0.558 5.558 10 H 0.432 0.568 11 C 0.507 3.493 12 O -0.577 6.577 13 N -0.606 5.606 14 C 0.095 3.905 15 C -0.159 4.159 16 C 0.060 3.940 17 O -0.398 6.398 18 C 0.103 3.897 19 H 0.030 0.970 20 C 0.164 3.836 21 N -0.753 5.753 22 C -0.236 4.236 23 H 0.059 0.941 24 C -0.064 4.064 25 N -0.982 5.982 26 Si 0.956 3.044 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.255 1.255 30 C 0.091 3.909 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.172 0.828 37 H 0.240 0.760 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.365 0.635 47 H 0.259 0.741 48 H 0.100 0.900 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 22.392 -24.837 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.140 0.860 4 C -0.059 4.059 5 C -0.129 4.129 6 C -0.190 4.190 7 N -0.256 5.256 8 C -0.095 4.095 9 N -0.162 5.162 10 H 0.272 0.728 11 C 0.297 3.703 12 O -0.456 6.456 13 N -0.338 5.338 14 C -0.026 4.026 15 C -0.197 4.197 16 C -0.016 4.016 17 O -0.317 6.317 18 C 0.043 3.957 19 H 0.048 0.952 20 C 0.037 3.963 21 N -0.399 5.399 22 C -0.366 4.366 23 H 0.077 0.923 24 C -0.255 4.255 25 N -0.633 5.633 26 Si 0.783 3.217 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.180 1.180 30 C -0.034 4.034 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.190 0.810 37 H 0.256 0.744 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.198 0.802 47 H 0.068 0.932 48 H 0.118 0.882 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.723 22.424 -25.053 33.630 hybrid contribution -1.221 -1.570 0.477 2.045 sum -0.498 20.854 -24.577 32.236 Atomic orbital electron populations 1.21902 0.91654 1.02746 1.03895 1.21321 0.98385 1.01508 0.90395 0.85956 1.19727 1.01995 0.96927 0.87262 1.21038 0.91746 1.02086 0.98048 1.22323 1.02564 0.98470 0.95688 1.70285 1.07078 1.28754 1.19524 1.25640 0.99426 0.89091 0.95331 1.43345 1.21260 1.28834 1.22745 0.72798 1.21337 0.77547 0.85769 0.85666 1.90718 1.45808 1.22378 1.86742 1.47991 1.65666 1.14708 1.05458 1.22418 0.99099 0.79835 1.01200 1.22446 0.98420 0.99598 0.99216 1.22515 0.96798 0.88569 0.93675 1.86356 1.60247 1.45392 1.39719 1.21909 0.90216 0.88857 0.94733 0.95181 1.20740 0.89589 0.91316 0.94606 1.42573 1.08012 1.45863 1.43423 1.19056 0.95944 1.11704 1.09940 0.92330 1.25502 1.01864 0.98674 0.99484 1.69882 1.31220 1.29122 1.33041 0.85385 0.79772 0.78766 0.77773 1.20500 1.21715 1.17971 1.22099 0.96816 0.96626 0.87863 0.90767 0.89985 0.92911 0.89560 0.91087 0.81030 0.74376 0.87088 0.89210 0.86230 0.90781 0.88388 0.93019 0.94154 0.94640 0.80156 0.93235 0.88190 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.50 71.98 0.61 -0.92 16 2 C -0.09 -1.24 1.84 -11.54 -0.02 -1.26 16 3 H 0.12 1.08 7.04 -2.39 -0.02 1.07 16 4 C -0.02 -0.29 4.56 29.85 0.14 -0.15 16 5 C -0.01 -0.17 5.59 40.95 0.23 0.06 16 6 C -0.04 -0.71 11.79 83.52 0.98 0.28 16 7 N -0.54 -9.73 11.25 -200.30 -2.25 -11.98 16 8 C 0.19 2.04 13.04 180.26 2.35 4.39 16 9 N -0.56 -5.11 5.94 -186.50 -1.11 -6.21 16 10 H 0.43 1.73 8.96 -92.71 -0.83 0.90 16 11 C 0.51 10.93 6.85 87.66 0.60 11.53 16 12 O -0.58 -17.91 15.47 -3.01 -0.05 -17.96 16 13 N -0.61 -11.76 2.19 -818.00 -1.79 -13.56 16 14 C 0.10 1.05 5.42 86.38 0.47 1.51 16 15 C -0.16 -1.98 5.79 30.31 0.18 -1.81 16 16 C 0.06 1.20 6.38 71.50 0.46 1.65 16 17 O -0.40 -12.25 9.38 -117.75 -1.10 -13.36 16 18 C 0.10 3.34 2.68 31.21 0.08 3.42 16 19 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 20 C 0.16 6.73 5.92 86.38 0.51 7.24 16 21 N -0.75 -37.96 5.34 -343.45 -1.83 -39.80 16 22 C -0.24 -14.14 10.47 84.03 0.88 -13.26 16 23 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 24 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 25 N -0.98 -64.62 13.97 21.65 0.30 -64.32 16 26 Si 0.96 47.33 27.73 68.60 1.90 49.23 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.25 -11.65 6.52 99.48 0.65 -11.00 16 30 C 0.09 2.31 4.92 87.25 0.43 2.73 16 31 H 0.07 0.71 4.79 -2.39 -0.01 0.70 16 32 H 0.08 0.65 7.34 -2.38 -0.02 0.63 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.07 1.18 8.10 -2.38 -0.02 1.16 16 36 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.24 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.11 0.72 4.36 -2.39 -0.01 0.71 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.14 8.01 -2.39 -0.02 1.12 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 0.99 5.82 -2.39 -0.01 0.98 16 44 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.37 17.90 5.52 -92.71 -0.51 17.39 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 48 H 0.10 2.23 8.11 -2.38 -0.02 2.21 16 49 H 0.08 2.34 7.19 -2.39 -0.02 2.32 16 Total: -1.00 -84.61 384.11 2.01 -82.61 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.42 Total: 23.37 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 8.36 Total: 11.99 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -6.69 Total: -135.87 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.15 Total: -31.32 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.23 kcal Total: -84.61 2.01 -82.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201611413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.580 kcal (2) G-P(sol) polarization free energy of solvation -84.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds