Wall clock time and date at job start Tue Mar 31 2020 19:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47465 * 2 1 4 4 C 1.50699 * 109.47643 * 239.99642 * 2 1 3 5 5 O 1.21272 * 120.00417 * 240.00687 * 4 2 1 6 6 N 1.34783 * 119.99662 * 59.99914 * 4 2 1 7 7 C 1.47511 * 118.75680 * 0.02573 * 6 4 2 8 8 C 1.53570 * 111.02856 * 138.34462 * 7 6 4 9 9 C 1.51537 * 109.58168 * 320.02300 * 8 7 6 10 10 O 1.42157 * 108.75099 * 91.40090 * 9 8 7 11 11 C 1.38018 * 119.43770 * 272.76504 * 10 9 8 12 12 H 1.08997 * 109.46897 * 303.43285 * 11 10 9 13 13 C 1.53004 * 109.46630 * 183.43698 * 11 10 9 14 14 N 1.46499 * 109.47198 * 64.99277 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.45122 * 118.75789 * 180.02562 * 6 4 2 24 24 C 1.50703 * 109.47057 * 119.99667 * 2 1 3 25 25 C 1.39865 * 126.03686 * 59.69295 * 24 2 1 26 26 N 1.30844 * 108.20513 * 179.81812 * 25 24 2 27 27 N 1.40089 * 108.20037 * 0.43657 * 26 25 24 28 28 C 1.46496 * 126.03865 * 179.73696 * 27 26 25 29 29 C 1.34947 * 107.92356 * 359.72211 * 27 26 25 30 30 H 1.08997 * 109.47599 * 300.00343 * 1 2 3 31 31 H 1.09001 * 109.46744 * 60.00173 * 1 2 3 32 32 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.16630 * 258.74351 * 7 6 4 34 34 H 1.09001 * 109.16962 * 17.99708 * 7 6 4 35 35 H 1.09004 * 109.44869 * 80.05501 * 8 7 6 36 36 H 1.08994 * 109.44996 * 200.00669 * 8 7 6 37 37 H 1.08997 * 109.58981 * 211.18146 * 9 8 7 38 38 H 1.09000 * 109.58668 * 331.47390 * 9 8 7 39 39 H 1.09009 * 109.46730 * 304.99064 * 13 11 10 40 40 H 1.08998 * 109.46846 * 184.99608 * 13 11 10 41 41 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46133 * 149.28449 * 23 6 4 44 44 H 1.08999 * 109.45691 * 29.32515 * 23 6 4 45 45 H 1.08001 * 125.90211 * 359.97438 * 25 24 2 46 46 H 1.09000 * 109.47150 * 269.98115 * 28 27 26 47 47 H 1.09004 * 109.46849 * 29.97763 * 28 27 26 48 48 H 1.08999 * 109.46948 * 149.97579 * 28 27 26 49 49 H 1.08007 * 126.12403 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8576 0.9517 -2.5580 8 6 1.3617 1.8890 -3.6652 9 6 2.8764 1.9312 -3.6443 10 8 3.3736 0.9292 -4.5216 11 6 3.5660 -0.3527 -4.0476 12 1 4.2366 -0.3256 -3.1887 13 6 4.1831 -1.2165 -5.1494 14 7 5.5224 -0.7163 -5.4696 15 6 6.2700 -1.3324 -6.4374 16 1 5.8741 -2.1897 -6.9615 17 6 7.5367 -0.8550 -6.7449 18 7 8.0192 0.1896 -6.1058 19 14 8.5568 -1.6958 -8.0645 20 1 7.8306 -1.6453 -9.3588 21 1 9.8611 -0.9991 -8.2008 22 1 8.7901 -3.1119 -7.6827 23 6 2.2049 -0.9553 -3.6210 24 6 2.0323 -0.7104 1.2305 25 6 1.7684 -2.0390 1.5790 26 7 2.3774 -2.2940 2.7086 27 7 3.0408 -1.1308 3.1203 28 6 3.8405 -0.9801 4.3385 29 6 2.8134 -0.1739 2.1964 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.1650 0.6490 -2.7835 34 1 0.8719 1.4831 -1.6064 35 1 1.0221 1.5221 -4.6339 36 1 0.9685 2.8918 -3.4987 37 1 3.2193 2.9110 -3.9768 38 1 3.2332 1.7433 -2.6317 39 1 3.5561 -1.1720 -6.0400 40 1 4.2532 -2.2484 -4.8056 41 1 5.8777 0.0539 -4.9991 42 1 8.9045 0.5230 -6.3204 43 1 1.4909 -0.8547 -4.4384 44 1 2.3341 -2.0103 -3.3796 45 1 1.1680 -2.7351 1.0122 46 1 3.1999 -0.6458 5.1546 47 1 4.2903 -1.9383 4.5987 48 1 4.6263 -0.2441 4.1685 49 1 3.1875 0.8390 2.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202260805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:26 Heat of formation + Delta-G solvation = 31.300515 kcal Electronic energy + Delta-G solvation = -30126.097945 eV Core-core repulsion = 26091.408686 eV Total energy + Delta-G solvation = -4034.689258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51740 -40.46540 -38.44219 -35.72683 -34.63001 -34.52333 -32.88124 -32.64191 -30.85375 -29.80235 -28.62472 -26.95000 -26.38568 -25.52396 -24.06772 -22.55999 -21.64870 -21.24416 -20.92952 -20.53268 -19.02037 -17.31821 -17.08656 -16.92588 -16.43015 -16.17248 -15.79071 -15.59764 -14.82130 -14.72679 -14.51949 -14.34109 -14.15041 -13.78026 -13.62029 -13.16054 -13.12378 -13.09656 -12.92988 -12.77105 -12.58973 -12.39483 -12.27020 -12.06836 -11.78807 -11.60818 -11.55131 -11.27036 -10.89398 -10.73956 -10.72358 -10.64543 -10.20765 -9.99575 -9.68610 -9.60474 -9.46384 -9.33463 -8.77947 -8.53293 -8.46641 -6.79871 -5.65074 -2.92940 1.74699 2.37384 2.60048 2.68753 3.04800 3.51683 3.54998 3.56638 4.01270 4.26695 4.38414 4.60211 4.61081 4.67111 4.74155 4.78034 4.85694 4.89720 4.96517 4.99827 5.11326 5.16418 5.30503 5.35599 5.38369 5.46977 5.48440 5.50001 5.54788 5.66232 5.68528 5.69626 5.79627 5.89589 5.99618 6.02510 6.06436 6.16068 6.39375 6.51384 6.59730 6.73049 6.83431 6.85006 7.31882 7.58347 7.78439 8.06678 8.23549 8.53431 9.64652 10.23484 10.59417 11.57949 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002873 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.225114 B = 9744.335812 C =11090.466425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 H 0.098 0.902 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.169 4.169 9 C 0.074 3.926 10 O -0.369 6.369 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.166 3.834 14 N -0.726 5.726 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.082 3.918 24 C -0.217 4.217 25 C 0.082 3.918 26 N -0.301 5.301 27 N -0.379 5.379 28 C 0.103 3.897 29 C 0.061 3.939 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.177 0.823 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.566 5.822 18.970 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 H 0.116 0.884 4 C 0.297 3.703 5 O -0.395 6.395 6 N -0.344 5.344 7 C -0.019 4.019 8 C -0.207 4.207 9 C -0.003 4.003 10 O -0.287 6.287 11 C 0.029 3.971 12 H 0.069 0.931 13 C 0.038 3.962 14 N -0.370 5.370 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.041 4.041 24 C -0.229 4.229 25 C -0.105 4.105 26 N -0.122 5.122 27 N -0.161 5.161 28 C -0.038 4.038 29 C -0.085 4.085 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.194 0.806 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -18.755 4.342 19.767 27.593 hybrid contribution 0.525 0.531 -0.922 1.187 sum -18.229 4.873 18.845 26.669 Atomic orbital electron populations 1.22072 0.92546 1.03223 1.03028 1.19490 0.96944 0.99094 0.89574 0.88394 1.20718 0.80267 0.84948 0.84378 1.90740 1.36592 1.26017 1.86135 1.47916 1.51620 1.28805 1.06093 1.22214 0.93715 0.85817 1.00193 1.22552 0.98314 0.99868 1.00008 1.22089 0.91789 0.92147 0.94256 1.86434 1.84532 1.18052 1.39659 1.22269 0.93795 0.83114 0.97904 0.93108 1.20611 0.87941 0.93969 0.93700 1.42226 1.12540 1.36772 1.45473 1.19196 0.96457 1.09303 1.11784 0.91243 1.24731 0.97724 0.98405 1.00255 1.69673 1.18059 1.26083 1.44427 0.86255 0.79575 0.78631 0.81662 1.21312 1.21763 1.21322 1.22395 0.96680 0.97993 0.87082 1.19398 1.08920 0.95653 0.98924 1.23578 0.98251 0.95513 0.93152 1.77370 1.13480 1.05606 1.15768 1.48374 1.40383 1.08237 1.19092 1.21827 0.94316 1.04185 0.83484 1.22227 0.99705 0.95735 0.90880 0.91476 0.90924 0.91979 0.91334 0.89481 0.89974 0.89766 0.89424 0.93593 0.95536 0.94811 0.77984 0.93613 0.90037 0.88925 0.80571 0.90914 0.89313 0.89528 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.59 37.15 0.32 -0.71 16 2 C -0.03 -0.27 2.26 -92.93 -0.21 -0.48 16 3 H 0.10 0.74 7.38 -51.93 -0.38 0.36 16 4 C 0.51 6.75 6.99 -10.98 -0.08 6.67 16 5 O -0.52 -9.26 14.81 5.56 0.08 -9.18 16 6 N -0.61 -7.30 2.19 -172.44 -0.38 -7.68 16 7 C 0.10 0.84 4.46 -3.19 -0.01 0.82 16 8 C -0.17 -1.54 5.79 -27.18 -0.16 -1.70 16 9 C 0.07 0.96 6.37 36.42 0.23 1.19 16 10 O -0.37 -6.62 9.38 -26.55 -0.25 -6.86 16 11 C 0.09 1.63 2.68 -25.75 -0.07 1.57 16 12 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 13 C 0.17 3.64 5.92 -4.04 -0.02 3.61 16 14 N -0.73 -19.88 5.54 -59.90 -0.33 -20.21 16 15 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.51 13.06 55.49 0.72 -28.78 16 19 Si 0.91 23.29 29.55 -169.99 -5.02 18.26 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C 0.08 1.19 4.87 -3.81 -0.02 1.17 16 24 C -0.22 -2.45 4.36 -105.05 -0.46 -2.91 16 25 C 0.08 1.05 10.78 -17.36 -0.19 0.86 16 26 N -0.30 -4.11 12.58 30.62 0.39 -3.72 16 27 N -0.38 -4.13 4.01 -68.16 -0.27 -4.40 16 28 C 0.10 0.66 11.47 59.84 0.69 1.35 16 29 C 0.06 0.61 11.38 -17.22 -0.20 0.41 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 4.61 -51.93 -0.24 0.15 16 32 H 0.06 0.47 8.02 -51.93 -0.42 0.06 16 33 H 0.07 0.45 7.55 -51.93 -0.39 0.06 16 34 H 0.09 0.52 4.96 -51.93 -0.26 0.27 16 35 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 39 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.39 11.25 7.65 -40.82 -0.31 10.93 16 42 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 44 H 0.09 1.46 7.27 -51.93 -0.38 1.08 16 45 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -38.54 390.37 -7.40 -45.94 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.80 Total: 6.60 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.42 Total: 4.17 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.13 Total: -64.80 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.17 Total: -16.05 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.54 -7.40 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.236 kcal (2) G-P(sol) polarization free energy of solvation -38.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds