Wall clock time and date at job start Tue Mar 31 2020 19:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47465 * 2 1 4 4 C 1.50699 * 109.47643 * 239.99642 * 2 1 3 5 5 O 1.21272 * 120.00417 * 240.00687 * 4 2 1 6 6 N 1.34783 * 119.99662 * 59.99914 * 4 2 1 7 7 C 1.47511 * 118.75680 * 0.02573 * 6 4 2 8 8 C 1.53570 * 111.02856 * 138.34462 * 7 6 4 9 9 C 1.51537 * 109.58168 * 320.02300 * 8 7 6 10 10 O 1.42157 * 108.75099 * 91.40090 * 9 8 7 11 11 C 1.38018 * 119.43770 * 272.76504 * 10 9 8 12 12 H 1.08997 * 109.46897 * 303.43285 * 11 10 9 13 13 C 1.53004 * 109.46630 * 183.43698 * 11 10 9 14 14 N 1.46499 * 109.47198 * 64.99277 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.45122 * 118.75789 * 180.02562 * 6 4 2 24 24 C 1.50703 * 109.47057 * 119.99667 * 2 1 3 25 25 C 1.39865 * 126.03686 * 59.69295 * 24 2 1 26 26 N 1.30844 * 108.20513 * 179.81812 * 25 24 2 27 27 N 1.40089 * 108.20037 * 0.43657 * 26 25 24 28 28 C 1.46496 * 126.03865 * 179.73696 * 27 26 25 29 29 C 1.34947 * 107.92356 * 359.72211 * 27 26 25 30 30 H 1.08997 * 109.47599 * 300.00343 * 1 2 3 31 31 H 1.09001 * 109.46744 * 60.00173 * 1 2 3 32 32 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.16630 * 258.74351 * 7 6 4 34 34 H 1.09001 * 109.16962 * 17.99708 * 7 6 4 35 35 H 1.09004 * 109.44869 * 80.05501 * 8 7 6 36 36 H 1.08994 * 109.44996 * 200.00669 * 8 7 6 37 37 H 1.08997 * 109.58981 * 211.18146 * 9 8 7 38 38 H 1.09000 * 109.58668 * 331.47390 * 9 8 7 39 39 H 1.09009 * 109.46730 * 304.99064 * 13 11 10 40 40 H 1.08998 * 109.46846 * 184.99608 * 13 11 10 41 41 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46133 * 149.28449 * 23 6 4 44 44 H 1.08999 * 109.45691 * 29.32515 * 23 6 4 45 45 H 1.08001 * 125.90211 * 359.97438 * 25 24 2 46 46 H 1.09000 * 109.47150 * 269.98115 * 28 27 26 47 47 H 1.09004 * 109.46849 * 29.97763 * 28 27 26 48 48 H 1.08999 * 109.46948 * 149.97579 * 28 27 26 49 49 H 1.08007 * 126.12403 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.8576 0.9517 -2.5580 8 6 1.3617 1.8890 -3.6652 9 6 2.8764 1.9312 -3.6443 10 8 3.3736 0.9292 -4.5216 11 6 3.5660 -0.3527 -4.0476 12 1 4.2366 -0.3256 -3.1887 13 6 4.1831 -1.2165 -5.1494 14 7 5.5224 -0.7163 -5.4696 15 6 6.2700 -1.3324 -6.4374 16 1 5.8741 -2.1897 -6.9615 17 6 7.5367 -0.8550 -6.7449 18 7 8.0192 0.1896 -6.1058 19 14 8.5568 -1.6958 -8.0645 20 1 7.8306 -1.6453 -9.3588 21 1 9.8611 -0.9991 -8.2008 22 1 8.7901 -3.1119 -7.6827 23 6 2.2049 -0.9553 -3.6210 24 6 2.0323 -0.7104 1.2305 25 6 1.7684 -2.0390 1.5790 26 7 2.3774 -2.2940 2.7086 27 7 3.0408 -1.1308 3.1203 28 6 3.8405 -0.9801 4.3385 29 6 2.8134 -0.1739 2.1964 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.1650 0.6490 -2.7835 34 1 0.8719 1.4831 -1.6064 35 1 1.0221 1.5221 -4.6339 36 1 0.9685 2.8918 -3.4987 37 1 3.2193 2.9110 -3.9768 38 1 3.2332 1.7433 -2.6317 39 1 3.5561 -1.1720 -6.0400 40 1 4.2532 -2.2484 -4.8056 41 1 5.8777 0.0539 -4.9991 42 1 8.9045 0.5230 -6.3204 43 1 1.4909 -0.8547 -4.4384 44 1 2.3341 -2.0103 -3.3796 45 1 1.1680 -2.7351 1.0122 46 1 3.1999 -0.6458 5.1546 47 1 4.2903 -1.9383 4.5987 48 1 4.6263 -0.2441 4.1685 49 1 3.1875 0.8390 2.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202260805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:25 Heat of formation + Delta-G solvation = 3.439325 kcal Electronic energy + Delta-G solvation = -30127.306097 eV Core-core repulsion = 26091.408686 eV Total energy + Delta-G solvation = -4035.897410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.35073 -41.48664 -39.65002 -36.94784 -36.25631 -35.42241 -34.24660 -33.48688 -32.63958 -30.67955 -29.95925 -27.86294 -27.24531 -26.82998 -25.35819 -24.11420 -22.75131 -22.29624 -22.00816 -21.42805 -19.91875 -19.26301 -18.23276 -17.82403 -17.62096 -17.29273 -16.93068 -16.49464 -16.31789 -15.92113 -15.56972 -15.26401 -15.16720 -15.14247 -14.74069 -14.60446 -14.53970 -13.97544 -13.84993 -13.67142 -13.61047 -13.39848 -13.19573 -13.10613 -13.05598 -12.73740 -12.60591 -12.46417 -12.39770 -12.25623 -12.12777 -11.89331 -11.77114 -11.45985 -11.39575 -10.97550 -10.65873 -10.50284 -10.32567 -9.57127 -9.31688 -9.02447 -7.94859 -5.24850 0.96395 1.45484 1.50493 1.56265 1.64959 1.70868 1.76292 2.15009 2.55970 2.76108 3.38266 3.55758 3.60560 3.67042 3.89885 3.98230 4.02662 4.10423 4.12966 4.20600 4.25542 4.30632 4.36678 4.41548 4.44446 4.45412 4.53135 4.59116 4.67897 4.73418 4.77490 4.84604 4.87662 4.89912 4.90235 5.05096 5.10975 5.16688 5.18491 5.26774 5.40678 5.45859 5.60353 5.67165 6.16355 6.25648 6.39671 6.74022 6.79132 7.25627 7.31626 8.05669 8.31305 9.28941 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002873 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.225114 B = 9744.335812 C =11090.466425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 H 0.126 0.874 4 C 0.504 3.496 5 O -0.578 6.578 6 N -0.607 5.607 7 C 0.096 3.904 8 C -0.158 4.158 9 C 0.063 3.937 10 O -0.398 6.398 11 C 0.108 3.892 12 H 0.016 0.984 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.250 4.250 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.980 3.020 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.278 1.278 23 C 0.096 3.904 24 C -0.236 4.236 25 C 0.063 3.937 26 N -0.344 5.344 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.064 3.936 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.172 0.828 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.462 7.788 19.326 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 H 0.144 0.856 4 C 0.293 3.707 5 O -0.456 6.456 6 N -0.340 5.340 7 C -0.024 4.024 8 C -0.196 4.196 9 C -0.013 4.013 10 O -0.317 6.317 11 C 0.047 3.953 12 H 0.034 0.966 13 C 0.035 3.965 14 N -0.383 5.383 15 C -0.382 4.382 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.204 1.204 23 C -0.029 4.029 24 C -0.248 4.248 25 C -0.122 4.122 26 N -0.166 5.166 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.083 4.083 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.189 0.811 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.130 0.870 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.724 6.315 20.131 29.574 hybrid contribution 1.116 -0.028 -0.975 1.482 sum -19.608 6.286 19.156 28.124 Atomic orbital electron populations 1.22071 0.90243 1.03026 1.04875 1.19555 0.98635 0.99378 0.86529 0.85602 1.21528 0.79197 0.84347 0.85634 1.90718 1.39233 1.28693 1.86971 1.48020 1.51438 1.29677 1.04852 1.22622 0.94075 0.84229 1.01524 1.22477 0.94897 1.02283 0.99969 1.22421 0.94748 0.90800 0.93311 1.86352 1.85469 1.18369 1.41553 1.21835 0.95013 0.83601 0.94803 0.96611 1.20753 0.85956 0.94577 0.95209 1.42428 1.14407 1.36359 1.45087 1.19652 0.97051 1.09447 1.12007 0.90506 1.25660 0.99045 0.99364 1.02917 1.69850 1.18289 1.27765 1.46234 0.85120 0.77507 0.77606 0.78960 1.20025 1.21866 1.20417 1.22041 0.95037 0.96995 0.88820 1.19701 1.09756 0.95239 1.00096 1.23686 0.98604 0.96611 0.93286 1.77272 1.14976 1.07652 1.16682 1.48754 1.40000 1.07617 1.20155 1.22166 0.94980 1.04762 0.82703 1.22868 0.98469 0.96975 0.89978 0.89743 0.88809 0.93321 0.88491 0.86464 0.90901 0.85898 0.88830 0.93832 0.94920 0.95100 0.79555 0.93965 0.88029 0.90740 0.81118 0.88899 0.89902 0.87028 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.59 71.98 0.62 -0.89 16 2 C -0.02 -0.31 2.26 -12.29 -0.03 -0.34 16 3 H 0.13 1.38 7.38 -2.38 -0.02 1.36 16 4 C 0.50 13.00 6.99 87.66 0.61 13.62 16 5 O -0.58 -21.43 14.81 -3.00 -0.04 -21.47 16 6 N -0.61 -13.59 2.19 -817.87 -1.79 -15.38 16 7 C 0.10 1.16 4.46 86.38 0.39 1.55 16 8 C -0.16 -2.30 5.79 30.31 0.18 -2.12 16 9 C 0.06 1.54 6.37 71.50 0.46 1.99 16 10 O -0.40 -14.38 9.38 -117.91 -1.11 -15.48 16 11 C 0.11 4.07 2.68 31.23 0.08 4.16 16 12 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 13 C 0.16 7.36 5.92 86.38 0.51 7.87 16 14 N -0.74 -41.97 5.54 -343.44 -1.90 -43.88 16 15 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 17 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 18 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 19 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 C 0.10 2.78 4.87 87.27 0.42 3.21 16 24 C -0.24 -5.11 4.36 -20.14 -0.09 -5.20 16 25 C 0.06 1.69 10.78 85.23 0.92 2.60 16 26 N -0.34 -9.65 12.58 -57.02 -0.72 -10.37 16 27 N -0.38 -8.04 4.01 -369.57 -1.48 -9.52 16 28 C 0.09 1.07 11.47 127.77 1.47 2.54 16 29 C 0.06 1.17 11.38 83.54 0.95 2.12 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.55 4.61 -2.39 -0.01 0.54 16 32 H 0.05 0.66 8.02 -2.38 -0.02 0.64 16 33 H 0.10 0.75 7.55 -2.38 -0.02 0.73 16 34 H 0.12 0.76 4.96 -2.39 -0.01 0.75 16 35 H 0.07 1.26 8.01 -2.38 -0.02 1.24 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.07 7.41 -2.39 -0.02 1.05 16 39 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.37 22.70 7.65 -92.71 -0.71 21.99 16 42 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 44 H 0.07 2.44 7.27 -2.39 -0.02 2.42 16 45 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -89.07 390.37 3.30 -85.77 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.24 Total: 29.84 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 7.79 Total: 12.60 kcal Atomic # 7 Polarization: -136.01 SS G_CDS: -5.61 Total: -141.63 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.15 Total: -36.96 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -89.07 3.30 -85.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.208 kcal (2) G-P(sol) polarization free energy of solvation -89.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds