Wall clock time and date at job start Tue Mar 31 2020 19:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46682 * 2 1 4 4 C 1.50701 * 109.46742 * 119.99996 * 2 1 3 5 5 O 1.21279 * 120.00448 * 120.00319 * 4 2 1 6 6 N 1.34778 * 120.00214 * 299.99601 * 4 2 1 7 7 C 1.47517 * 118.75443 * 0.02562 * 6 4 2 8 8 C 1.53568 * 111.03114 * 221.60477 * 7 6 4 9 9 C 1.51540 * 109.58372 * 39.97610 * 8 7 6 10 10 O 1.42150 * 108.75177 * 268.60183 * 9 8 7 11 11 C 1.37990 * 119.42816 * 87.23630 * 10 9 8 12 12 H 1.08991 * 109.47889 * 56.57129 * 11 10 9 13 13 C 1.53008 * 109.44681 * 176.55204 * 11 10 9 14 14 N 1.46495 * 109.46888 * 300.01661 * 13 11 10 15 15 C 1.36940 * 119.99663 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99864 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99888 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00102 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47471 * 90.00071 * 19 17 15 21 21 H 1.48505 * 109.46879 * 210.00251 * 19 17 15 22 22 H 1.48502 * 109.47065 * 329.99577 * 19 17 15 23 23 C 1.45118 * 118.76150 * 180.02562 * 6 4 2 24 24 C 1.50694 * 109.47109 * 239.99284 * 2 1 3 25 25 C 1.39868 * 126.04671 * 300.02808 * 24 2 1 26 26 N 1.30831 * 108.20571 * 179.97438 * 25 24 2 27 27 N 1.40084 * 108.20973 * 0.02562 * 26 25 24 28 28 C 1.46501 * 126.04416 * 179.97438 * 27 26 25 29 29 C 1.34955 * 107.92040 * 359.75466 * 27 26 25 30 30 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47233 * 300.00128 * 1 2 3 32 32 H 1.08997 * 109.47276 * 60.00393 * 1 2 3 33 33 H 1.08999 * 109.16774 * 342.00622 * 7 6 4 34 34 H 1.09004 * 109.16806 * 101.25697 * 7 6 4 35 35 H 1.08997 * 109.45203 * 160.01173 * 8 7 6 36 36 H 1.08997 * 109.45115 * 279.94210 * 8 7 6 37 37 H 1.08999 * 109.58631 * 28.38427 * 9 8 7 38 38 H 1.09003 * 109.58461 * 148.67477 * 9 8 7 39 39 H 1.09003 * 109.46610 * 60.01426 * 13 11 10 40 40 H 1.09000 * 109.46796 * 180.02562 * 13 11 10 41 41 H 0.97001 * 120.00465 * 359.97438 * 14 13 11 42 42 H 0.97005 * 119.99874 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.46164 * 210.76892 * 23 6 4 44 44 H 1.09004 * 109.45926 * 330.74111 * 23 6 4 45 45 H 1.07999 * 125.89613 * 359.96210 * 25 24 2 46 46 H 1.08996 * 109.46887 * 90.02255 * 28 27 26 47 47 H 1.08998 * 109.46870 * 210.02603 * 28 27 26 48 48 H 1.09000 * 109.46541 * 330.02436 * 28 27 26 49 49 H 1.08001 * 126.12811 * 180.23301 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1194 6 7 1.7067 -0.2499 2.4546 7 6 0.8568 0.9513 2.5580 8 6 1.3597 1.8886 3.6656 9 6 2.8743 1.9318 3.6456 10 8 3.3717 0.9300 4.5228 11 6 3.5652 -0.3513 4.0484 12 1 4.2362 -0.3236 3.1900 13 6 4.1825 -1.2147 5.1505 14 7 5.4695 -0.6436 5.5549 15 6 6.2104 -1.2502 6.5338 16 1 5.8457 -2.1495 7.0079 17 6 7.4302 -0.7094 6.9167 18 7 8.1425 -1.2928 7.8572 19 14 8.0612 0.8456 6.0962 20 1 7.5806 2.0323 6.8483 21 1 9.5462 0.8330 6.0875 22 1 7.5587 0.9075 4.7001 23 6 2.2055 -0.9545 3.6211 24 6 2.0323 -0.7105 -1.2303 25 6 1.7731 -2.0408 -1.5760 26 7 2.3769 -2.2939 -2.7087 27 7 3.0410 -1.1311 -3.1201 28 6 3.8409 -0.9804 -4.3382 29 6 2.8098 -0.1727 -2.1986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.8704 1.4824 1.6062 34 1 -0.1656 0.6480 2.7838 35 1 0.9657 2.8912 3.4994 36 1 1.0198 1.5214 4.6340 37 1 3.2319 1.7419 2.6336 38 1 3.2163 2.9127 3.9760 39 1 3.5114 -1.2425 6.0090 40 1 4.3359 -2.2268 4.7760 41 1 5.7972 0.1639 5.1288 42 1 8.9947 -0.9146 8.1251 43 1 1.4912 -0.8550 4.4384 44 1 2.3365 -2.0094 3.3797 45 1 1.1776 -2.7386 -1.0061 46 1 3.2005 -0.6455 -5.1542 47 1 4.6271 -0.2450 -4.1679 48 1 4.2900 -1.9388 -4.5987 49 1 3.1808 0.8412 -2.2274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202260812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:36 Heat of formation + Delta-G solvation = 35.063647 kcal Electronic energy + Delta-G solvation = -30232.509704 eV Core-core repulsion = 26197.983627 eV Total energy + Delta-G solvation = -4034.526077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58345 -40.56712 -38.58001 -35.84750 -34.72747 -34.68178 -32.94995 -32.70790 -31.11231 -29.89081 -28.95055 -27.05411 -26.49922 -25.70911 -24.11650 -22.34542 -21.70723 -21.30766 -21.00877 -20.60903 -19.09391 -17.64395 -17.36809 -17.00044 -16.56699 -16.25728 -15.93597 -15.66062 -14.89271 -14.78885 -14.55911 -14.37263 -14.28466 -13.86416 -13.68585 -13.42910 -13.21901 -13.12318 -12.91605 -12.84805 -12.60086 -12.46634 -12.37872 -12.19721 -11.85929 -11.78945 -11.68690 -11.40384 -11.13538 -10.85222 -10.79145 -10.70330 -10.30745 -10.05815 -9.73758 -9.53908 -9.50207 -9.47481 -8.81419 -8.60409 -8.57125 -7.12256 -5.67935 -3.01857 1.68614 2.31629 2.53110 2.60470 2.96560 3.45814 3.50082 3.51886 3.85905 4.20540 4.30911 4.51258 4.54410 4.62893 4.68847 4.71405 4.80017 4.83410 4.85758 4.92518 5.05836 5.10680 5.13917 5.24849 5.29491 5.37279 5.39706 5.41694 5.46693 5.54946 5.62111 5.62919 5.73267 5.77010 5.85989 5.90661 5.95028 6.01065 6.06321 6.45306 6.49987 6.62071 6.73045 6.77390 7.22858 7.52745 7.89342 8.08682 8.14860 8.51347 9.31418 10.04003 10.25184 11.50703 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003071 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.576866 B = 9116.833684 C =10229.587332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 H 0.098 0.902 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.169 4.169 9 C 0.072 3.928 10 O -0.372 6.372 11 C 0.085 3.915 12 H 0.050 0.950 13 C 0.171 3.829 14 N -0.750 5.750 15 C -0.239 4.239 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.937 5.937 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.083 3.917 24 C -0.218 4.218 25 C 0.082 3.918 26 N -0.301 5.301 27 N -0.379 5.379 28 C 0.103 3.897 29 C 0.060 3.940 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.178 0.822 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 8.944 -23.119 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 H 0.116 0.884 4 C 0.297 3.703 5 O -0.395 6.395 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.207 4.207 9 C -0.004 4.004 10 O -0.290 6.290 11 C 0.025 3.975 12 H 0.068 0.932 13 C 0.043 3.957 14 N -0.395 5.395 15 C -0.369 4.369 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.585 5.585 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.041 4.041 24 C -0.230 4.230 25 C -0.105 4.105 26 N -0.121 5.121 27 N -0.161 5.161 28 C -0.038 4.038 29 C -0.086 4.086 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.195 0.805 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.227 7.408 -23.870 31.533 hybrid contribution 0.366 1.803 -0.165 1.847 sum -18.861 9.210 -24.035 31.910 Atomic orbital electron populations 1.22077 0.92485 1.03287 1.03051 1.19487 0.97003 0.99034 0.89553 0.88441 1.20736 0.80255 0.84938 0.84387 1.90743 1.36620 1.25968 1.86144 1.47920 1.51595 1.28884 1.06083 1.22223 0.93799 0.85787 1.00156 1.22540 0.98059 0.99977 1.00152 1.22119 0.92123 0.92018 0.94180 1.86409 1.84579 1.18133 1.39850 1.22315 0.94215 0.83157 0.97841 0.93222 1.20599 0.87720 0.93845 0.93548 1.42551 1.19712 1.31153 1.46109 1.19075 0.99405 1.07765 1.10649 0.89188 1.24643 0.97190 0.98757 0.98687 1.69710 1.14649 1.41356 1.32799 0.86498 0.77832 0.84591 0.79356 1.21049 1.21901 1.20496 1.22350 0.96454 0.98083 0.87201 1.19398 1.09092 0.95570 0.98892 1.23584 0.98287 0.95513 0.93075 1.77373 1.13497 1.05652 1.15622 1.48385 1.40276 1.08210 1.19203 1.21829 0.94303 1.04200 0.83488 1.22223 0.99742 0.95670 0.90978 0.91924 0.90916 0.91448 0.89448 0.91208 0.89692 0.89822 0.93571 0.89406 0.94702 0.93962 0.80298 0.93168 0.89795 0.88734 0.80524 0.90893 0.89551 0.89274 0.81134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.60 37.16 0.32 -0.64 16 2 C -0.03 -0.25 2.26 -92.92 -0.21 -0.46 16 3 H 0.10 0.67 7.38 -51.93 -0.38 0.29 16 4 C 0.51 6.35 6.99 -10.98 -0.08 6.28 16 5 O -0.52 -8.84 14.80 5.56 0.08 -8.76 16 6 N -0.61 -6.82 2.19 -172.49 -0.38 -7.20 16 7 C 0.10 0.76 4.46 -3.19 -0.01 0.74 16 8 C -0.17 -1.40 5.79 -27.17 -0.16 -1.56 16 9 C 0.07 0.86 6.38 36.42 0.23 1.09 16 10 O -0.37 -6.19 9.18 -26.45 -0.24 -6.43 16 11 C 0.08 1.45 2.73 -25.80 -0.07 1.38 16 12 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 13 C 0.17 3.56 5.95 -4.04 -0.02 3.53 16 14 N -0.75 -19.25 5.29 -59.91 -0.32 -19.57 16 15 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.94 -30.47 13.97 55.49 0.78 -29.69 16 19 Si 0.89 23.33 27.74 -169.99 -4.71 18.61 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 23 C 0.08 1.13 4.86 -3.86 -0.02 1.11 16 24 C -0.22 -2.33 4.36 -105.05 -0.46 -2.79 16 25 C 0.08 1.01 10.77 -17.37 -0.19 0.82 16 26 N -0.30 -3.96 12.58 30.62 0.39 -3.57 16 27 N -0.38 -3.94 4.01 -68.16 -0.27 -4.21 16 28 C 0.10 0.61 11.47 59.85 0.69 1.30 16 29 C 0.06 0.57 11.38 -17.22 -0.20 0.37 16 30 H 0.06 0.45 8.02 -51.93 -0.42 0.03 16 31 H 0.07 0.35 4.61 -51.93 -0.24 0.11 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.46 4.96 -51.93 -0.26 0.21 16 34 H 0.07 0.41 7.55 -51.93 -0.39 0.02 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 37 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.36 9.32 5.39 -40.82 -0.22 9.10 16 42 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 43 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 44 H 0.09 1.40 7.27 -51.93 -0.38 1.02 16 45 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -39.17 386.94 -7.03 -46.20 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.75 Total: 4.90 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.43 Total: 3.88 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.19 Total: -64.25 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.16 Total: -15.19 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.71 Total: 18.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.17 -7.03 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.267 kcal (2) G-P(sol) polarization free energy of solvation -39.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds