Wall clock time and date at job start Tue Mar 31 2020 19:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46682 * 2 1 4 4 C 1.50701 * 109.46742 * 119.99996 * 2 1 3 5 5 O 1.21279 * 120.00448 * 120.00319 * 4 2 1 6 6 N 1.34778 * 120.00214 * 299.99601 * 4 2 1 7 7 C 1.47517 * 118.75443 * 0.02562 * 6 4 2 8 8 C 1.53568 * 111.03114 * 221.60477 * 7 6 4 9 9 C 1.51540 * 109.58372 * 39.97610 * 8 7 6 10 10 O 1.42150 * 108.75177 * 268.60183 * 9 8 7 11 11 C 1.37990 * 119.42816 * 87.23630 * 10 9 8 12 12 H 1.08991 * 109.47889 * 56.57129 * 11 10 9 13 13 C 1.53008 * 109.44681 * 176.55204 * 11 10 9 14 14 N 1.46495 * 109.46888 * 300.01661 * 13 11 10 15 15 C 1.36940 * 119.99663 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99864 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99888 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00102 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47471 * 90.00071 * 19 17 15 21 21 H 1.48505 * 109.46879 * 210.00251 * 19 17 15 22 22 H 1.48502 * 109.47065 * 329.99577 * 19 17 15 23 23 C 1.45118 * 118.76150 * 180.02562 * 6 4 2 24 24 C 1.50694 * 109.47109 * 239.99284 * 2 1 3 25 25 C 1.39868 * 126.04671 * 300.02808 * 24 2 1 26 26 N 1.30831 * 108.20571 * 179.97438 * 25 24 2 27 27 N 1.40084 * 108.20973 * 0.02562 * 26 25 24 28 28 C 1.46501 * 126.04416 * 179.97438 * 27 26 25 29 29 C 1.34955 * 107.92040 * 359.75466 * 27 26 25 30 30 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47233 * 300.00128 * 1 2 3 32 32 H 1.08997 * 109.47276 * 60.00393 * 1 2 3 33 33 H 1.08999 * 109.16774 * 342.00622 * 7 6 4 34 34 H 1.09004 * 109.16806 * 101.25697 * 7 6 4 35 35 H 1.08997 * 109.45203 * 160.01173 * 8 7 6 36 36 H 1.08997 * 109.45115 * 279.94210 * 8 7 6 37 37 H 1.08999 * 109.58631 * 28.38427 * 9 8 7 38 38 H 1.09003 * 109.58461 * 148.67477 * 9 8 7 39 39 H 1.09003 * 109.46610 * 60.01426 * 13 11 10 40 40 H 1.09000 * 109.46796 * 180.02562 * 13 11 10 41 41 H 0.97001 * 120.00465 * 359.97438 * 14 13 11 42 42 H 0.97005 * 119.99874 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.46164 * 210.76892 * 23 6 4 44 44 H 1.09004 * 109.45926 * 330.74111 * 23 6 4 45 45 H 1.07999 * 125.89613 * 359.96210 * 25 24 2 46 46 H 1.08996 * 109.46887 * 90.02255 * 28 27 26 47 47 H 1.08998 * 109.46870 * 210.02603 * 28 27 26 48 48 H 1.09000 * 109.46541 * 330.02436 * 28 27 26 49 49 H 1.08001 * 126.12811 * 180.23301 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1194 6 7 1.7067 -0.2499 2.4546 7 6 0.8568 0.9513 2.5580 8 6 1.3597 1.8886 3.6656 9 6 2.8743 1.9318 3.6456 10 8 3.3717 0.9300 4.5228 11 6 3.5652 -0.3513 4.0484 12 1 4.2362 -0.3236 3.1900 13 6 4.1825 -1.2147 5.1505 14 7 5.4695 -0.6436 5.5549 15 6 6.2104 -1.2502 6.5338 16 1 5.8457 -2.1495 7.0079 17 6 7.4302 -0.7094 6.9167 18 7 8.1425 -1.2928 7.8572 19 14 8.0612 0.8456 6.0962 20 1 7.5806 2.0323 6.8483 21 1 9.5462 0.8330 6.0875 22 1 7.5587 0.9075 4.7001 23 6 2.2055 -0.9545 3.6211 24 6 2.0323 -0.7105 -1.2303 25 6 1.7731 -2.0408 -1.5760 26 7 2.3769 -2.2939 -2.7087 27 7 3.0410 -1.1311 -3.1201 28 6 3.8409 -0.9804 -4.3382 29 6 2.8098 -0.1727 -2.1986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.8704 1.4824 1.6062 34 1 -0.1656 0.6480 2.7838 35 1 0.9657 2.8912 3.4994 36 1 1.0198 1.5214 4.6340 37 1 3.2319 1.7419 2.6336 38 1 3.2163 2.9127 3.9760 39 1 3.5114 -1.2425 6.0090 40 1 4.3359 -2.2268 4.7760 41 1 5.7972 0.1639 5.1288 42 1 8.9947 -0.9146 8.1251 43 1 1.4912 -0.8550 4.4384 44 1 2.3365 -2.0094 3.3797 45 1 1.1776 -2.7386 -1.0061 46 1 3.2005 -0.6455 -5.1542 47 1 4.6271 -0.2450 -4.1679 48 1 4.2900 -1.9388 -4.5987 49 1 3.1808 0.8412 -2.2274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202260812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:35 Heat of formation + Delta-G solvation = 6.395804 kcal Electronic energy + Delta-G solvation = -30233.752835 eV Core-core repulsion = 26197.983627 eV Total energy + Delta-G solvation = -4035.769208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.35856 -41.50952 -39.69322 -37.05103 -36.32669 -35.43317 -34.28691 -33.50540 -32.96347 -30.75891 -30.14536 -27.93279 -27.27762 -26.86976 -25.22657 -23.91368 -22.80667 -22.33334 -22.01691 -21.43018 -19.92342 -19.80776 -18.25141 -17.83178 -17.64372 -17.29052 -17.00114 -16.43890 -16.32385 -16.05805 -15.63185 -15.36136 -15.16466 -14.98149 -14.86071 -14.63760 -14.57677 -14.03294 -13.88050 -13.80271 -13.68586 -13.49443 -13.30543 -13.21353 -13.07931 -12.85466 -12.58186 -12.47052 -12.42154 -12.29568 -12.08990 -11.90048 -11.79637 -11.46268 -11.41506 -11.03482 -10.66618 -10.53385 -10.33243 -9.59105 -9.33222 -9.32151 -8.05015 -5.38149 0.96190 1.34293 1.38735 1.46015 1.64671 1.70070 1.75085 2.13792 2.46585 2.71039 3.26318 3.49050 3.55583 3.60078 3.87455 3.96405 3.99961 4.05942 4.07531 4.19062 4.20438 4.27946 4.33159 4.38039 4.42326 4.43912 4.51813 4.56232 4.67568 4.72947 4.76651 4.84026 4.86426 4.87337 4.89902 5.04337 5.07924 5.16021 5.17574 5.26039 5.40185 5.59241 5.66540 5.71264 6.16156 6.18624 6.38377 6.73737 6.74087 7.04498 7.24640 7.80236 8.01083 9.16626 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003071 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.576866 B = 9116.833684 C =10229.587332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 H 0.128 0.872 4 C 0.504 3.496 5 O -0.577 6.577 6 N -0.607 5.607 7 C 0.095 3.905 8 C -0.160 4.160 9 C 0.061 3.939 10 O -0.399 6.399 11 C 0.104 3.896 12 H 0.025 0.975 13 C 0.165 3.835 14 N -0.753 5.753 15 C -0.237 4.237 16 H 0.058 0.942 17 C -0.063 4.063 18 N -0.983 5.983 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.263 1.263 23 C 0.094 3.906 24 C -0.236 4.236 25 C 0.063 3.937 26 N -0.344 5.344 27 N -0.384 5.384 28 C 0.094 3.906 29 C 0.065 3.935 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.171 0.829 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.861 12.982 -25.209 35.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 H 0.146 0.854 4 C 0.293 3.707 5 O -0.455 6.455 6 N -0.340 5.340 7 C -0.025 4.025 8 C -0.198 4.198 9 C -0.015 4.015 10 O -0.318 6.318 11 C 0.044 3.956 12 H 0.043 0.957 13 C 0.038 3.962 14 N -0.398 5.398 15 C -0.367 4.367 16 H 0.076 0.924 17 C -0.255 4.255 18 N -0.633 5.633 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.188 1.188 23 C -0.031 4.031 24 C -0.248 4.248 25 C -0.122 4.122 26 N -0.167 5.167 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.082 4.082 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.199 0.801 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.188 0.812 46 H 0.110 0.890 47 H 0.131 0.869 48 H 0.101 0.899 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -21.119 11.475 -25.991 35.401 hybrid contribution 0.908 0.511 0.484 1.149 sum -20.211 11.986 -25.507 34.681 Atomic orbital electron populations 1.22078 0.90402 1.02972 1.04857 1.19551 0.98509 0.99456 0.86531 0.85410 1.21515 0.79209 0.84328 0.85604 1.90725 1.39267 1.28586 1.86963 1.48017 1.51400 1.29729 1.04821 1.22621 0.94032 0.84257 1.01589 1.22479 0.95174 1.02229 0.99898 1.22475 0.94677 0.90860 0.93474 1.86334 1.85436 1.18275 1.41725 1.21858 0.95297 0.83632 0.94820 0.95694 1.20740 0.86061 0.94408 0.95008 1.42552 1.20974 1.31098 1.45207 1.19074 0.99887 1.06786 1.10996 0.92387 1.25499 0.97531 1.02731 0.99720 1.69886 1.15243 1.43466 1.34744 0.85340 0.76970 0.80045 0.78986 1.19886 1.21745 1.18780 1.22020 0.95091 0.97101 0.88846 1.19700 1.09911 0.95059 1.00114 1.23683 0.98653 0.96691 0.93213 1.77276 1.15048 1.07775 1.16555 1.48763 1.39893 1.07613 1.20279 1.22164 0.94969 1.04763 0.82712 1.22879 0.98434 0.96925 0.89975 0.93436 0.88812 0.89790 0.86384 0.88747 0.85924 0.90972 0.93455 0.88304 0.94447 0.94742 0.80083 0.93196 0.88110 0.90690 0.81225 0.88986 0.86931 0.89940 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.60 71.98 0.62 -0.71 16 2 C -0.02 -0.27 2.26 -12.29 -0.03 -0.30 16 3 H 0.13 1.10 7.38 -2.39 -0.02 1.08 16 4 C 0.50 11.91 6.99 87.66 0.61 12.52 16 5 O -0.58 -20.10 14.80 -3.03 -0.04 -20.15 16 6 N -0.61 -12.24 2.19 -818.03 -1.79 -14.03 16 7 C 0.10 0.97 4.46 86.38 0.39 1.35 16 8 C -0.16 -1.93 5.79 30.31 0.18 -1.76 16 9 C 0.06 1.25 6.38 71.50 0.46 1.70 16 10 O -0.40 -12.71 9.18 -117.56 -1.08 -13.79 16 11 C 0.10 3.56 2.73 31.20 0.09 3.65 16 12 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 13 C 0.16 7.04 5.95 86.38 0.51 7.55 16 14 N -0.75 -39.15 5.29 -343.44 -1.82 -40.97 16 15 C -0.24 -14.52 10.47 84.03 0.88 -13.64 16 16 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 17 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.98 -65.53 13.97 21.65 0.30 -65.22 16 19 Si 0.96 48.41 27.74 68.60 1.90 50.32 16 20 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.26 -12.41 6.52 99.48 0.65 -11.76 16 23 C 0.09 2.52 4.86 87.24 0.42 2.95 16 24 C -0.24 -4.71 4.36 -20.14 -0.09 -4.79 16 25 C 0.06 1.59 10.77 85.24 0.92 2.51 16 26 N -0.34 -9.26 12.58 -57.03 -0.72 -9.98 16 27 N -0.38 -7.50 4.01 -369.56 -1.48 -8.98 16 28 C 0.09 0.95 11.47 127.77 1.47 2.42 16 29 C 0.06 1.06 11.38 83.54 0.95 2.01 16 30 H 0.05 0.60 8.02 -2.39 -0.02 0.58 16 31 H 0.09 0.44 4.61 -2.39 -0.01 0.42 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.52 4.96 -2.39 -0.01 0.51 16 34 H 0.09 0.60 7.55 -2.39 -0.02 0.58 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 1.10 8.01 -2.39 -0.02 1.08 16 37 H 0.05 0.96 7.40 -2.39 -0.02 0.94 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.37 18.55 5.39 -92.71 -0.50 18.05 16 42 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 43 H 0.10 2.33 8.11 -2.39 -0.02 2.32 16 44 H 0.07 2.31 7.27 -2.39 -0.02 2.29 16 45 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 46 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -90.64 386.94 3.50 -87.13 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.40 Total: 23.68 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 7.84 Total: 11.99 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -5.51 Total: -139.19 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.12 Total: -33.93 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.90 Total: 50.32 kcal Total: -90.64 3.50 -87.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -90.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds